View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19670_high_3 (Length: 459)
Name: NF19670_high_3
Description: NF19670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19670_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Original strand, 3932954 - 3933380
Alignment:
| Q |
18 |
ggtgacaattcttttggttgatgttgatcatttgcttccattttaagtttgttaccttgtacttactgggtaatgccttattattgttttcctgtattta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3932954 |
ggtgacaattcttttggttgatgttgatcatttgcttccattttaagtttgttaccttgtacttactgcgtaatgccttattattgttttcctgtattta |
3933053 |
T |
|
| Q |
118 |
aattgttaatatatctgaaatcaggttggagattgggtcagagtgaaagcttcagtatcttctccaaaatatggatgggaggatattacaaggaacagta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3933054 |
aattgttaatatatctgaaatcaggttggagattgggtcagagtgaaagcttcagtatcttctccaaaatatggatgggaggatattacaaggaacagta |
3933153 |
T |
|
| Q |
218 |
ttggtgtaattcatagcttggaagaggatggcgatatgggtgttgccttttgcttcagaagcaagcctttttcgtgctcagtcactgatgtggagaaagt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3933154 |
ttggtgtaattcatagcttggaagaggatggcgatatgggtgttgccttttgcttcagaagtaagcctttttcgtgctcggtcactgatgtggagaaagt |
3933253 |
T |
|
| Q |
318 |
tcctccttttgaggtgggacaagaaactcgtgtgatgcaatccgttaatcagccacggcttgggtggtcaaatgaatcaccagcaactgttggaaaaata |
417 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3933254 |
tcctccttttgaggtgggacaagaaattcgtgtgatgcaatccgttaatcagccacggcttgggtggtcaaatgaatcaccagcaactgttggaaaaata |
3933353 |
T |
|
| Q |
418 |
gtgcgaattgacatggatggtgccctc |
444 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
3933354 |
gtgcgaattgacatggatggtgccctc |
3933380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University