View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19670_high_6 (Length: 321)
Name: NF19670_high_6
Description: NF19670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19670_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 308
Target Start/End: Complemental strand, 36918518 - 36918222
Alignment:
| Q |
14 |
ctgtggaacaaattaactttttcatttcctcttttagaaacaatgaaaaacaatgttttgtcattttcaaaatttctaaaagtgcaagatctattttaaa |
113 |
Q |
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| T |
36918518 |
ctgtgaaacaaattaactttttcatttcctcttttagtaacaatgaaaaacaatgttttgtcattttcaaaatttctaaaaatgcatgatctattttaaa |
36918419 |
T |
|
| Q |
114 |
aaattgtaaaagagaatgatgttagaactatattctaatttgtttattattccaggtaaaagtataaacaagaaacataagaagtaaacagagccgattt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
36918418 |
aaattgtaaaagagaatgatgttagaactatattctaatttgtttattattccaagtaaaaatataaacaagaaacataagaagtaaacagagccgattt |
36918319 |
T |
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| Q |
214 |
ttaaagagttagaaaataaaaatttgaggtttaactagtaatctgatata--aatnnnnnnnnnttaactgagttagaagtatattacattatttct |
308 |
Q |
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| T |
36918318 |
ttaaagaattagaaaataaaaatctgaggtttaactagtaatctgatatatgaatcaaaaaattttaactgagttagaagtatattacattatttct |
36918222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 50552987 - 50552924
Alignment:
| Q |
62 |
aacaatgttttgtcattttcaaaatttctaaaagtgcaagatctattttaaaaaattgtaaaag |
125 |
Q |
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| T |
50552987 |
aacaatgttttgacattttcaaaatttcttaaaatgctagatctattttcaaaaattgtaaaag |
50552924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 2315400 - 2315467
Alignment:
| Q |
61 |
aaacaatgttttgtcattttcaaaatttct--aaaagtgcaagatctattttaaaaaattgtaaaaga |
126 |
Q |
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| T |
2315400 |
aaacagtgttttgacattttcaaaatttctgaaaaaatgctagatctgtttcaaaatattgtaaaaga |
2315467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 37697511 - 37697576
Alignment:
| Q |
59 |
aaaaacaatgttttgtcattttcaaaatttctaaaagtgcaagatctattttaaaaaattgtaaaa |
124 |
Q |
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| T |
37697511 |
aaaaacaatgttttgacattttcaaaatttcttaaactgctgaatctattttaaaaaattgtaaaa |
37697576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 131
Target Start/End: Complemental strand, 26128659 - 26128575
Alignment:
| Q |
45 |
ttttagaaacaatgaaaaacaatgttttgtcattttcaaaatttctaaaagtgcaagatctattttaaaaaattgtaaaagagaatg |
131 |
Q |
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||||||||||||||||| |||||||||| |||||| || ||| | ||| ||| ||||||||||||||||||| ||||||| |||| |
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| T |
26128659 |
ttttagaaacaatgaaa--caatgttttgccattttgaatgtttttgaaaatgctagatctattttaaaaaattataaaagaaaatg |
26128575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 18835929 - 18835996
Alignment:
| Q |
67 |
tgttttgtcattttcaaaatttctaaaagtgcaagatctattttaaaaaattgtaaaagagaatgatg |
134 |
Q |
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| T |
18835929 |
tgttttgtcattttcaaaatttctgaaaatgcaagatctgttcccaaaaattgtaggagaaaatgatg |
18835996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 33583142 - 33583183
Alignment:
| Q |
45 |
ttttagaaacaatgaaaaacaatgttttgtcattttcaaaat |
86 |
Q |
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| T |
33583142 |
ttttagaaacaatgaaaaataatattttgtcattttcgaaat |
33583183 |
T |
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