View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19670_low_11 (Length: 288)

Name: NF19670_low_11
Description: NF19670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19670_low_11
NF19670_low_11
[»] chr8 (9 HSPs)
chr8 (1-288)||(37126067-37126356)
chr8 (1-214)||(37113405-37113618)
chr8 (239-284)||(1778561-1778606)
chr8 (240-284)||(7185962-7186006)
chr8 (240-284)||(14489031-14489075)
chr8 (239-283)||(23939544-23939588)
chr8 (240-284)||(34963622-34963666)
chr8 (240-284)||(42132862-42132906)
chr8 (240-284)||(42133112-42133156)
[»] chr7 (5 HSPs)
chr7 (246-288)||(39520684-39520726)
chr7 (246-288)||(19005602-19005644)
chr7 (246-284)||(28529167-28529205)
chr7 (240-288)||(25547444-25547492)
chr7 (240-284)||(44403207-44403251)
[»] chr6 (6 HSPs)
chr6 (246-288)||(15722614-15722656)
chr6 (246-284)||(14656218-14656256)
chr6 (246-284)||(18024015-18024053)
chr6 (246-288)||(31276294-31276336)
chr6 (239-284)||(19690717-19690762)
chr6 (240-284)||(24901237-24901281)
[»] chr5 (6 HSPs)
chr5 (246-284)||(4736209-4736247)
chr5 (246-288)||(12145137-12145179)
chr5 (246-288)||(37271660-37271702)
chr5 (246-288)||(38452350-38452392)
chr5 (239-284)||(35928416-35928461)
chr5 (239-284)||(36973350-36973395)
[»] chr4 (7 HSPs)
chr4 (246-288)||(28449168-28449210)
chr4 (246-288)||(11693075-11693117)
chr4 (246-284)||(47022744-47022782)
chr4 (246-284)||(52543426-52543464)
chr4 (247-284)||(47532630-47532667)
chr4 (240-284)||(13073757-13073801)
chr4 (240-288)||(42824045-42824093)
[»] chr3 (7 HSPs)
chr3 (246-284)||(29678028-29678066)
chr3 (240-288)||(20644503-20644551)
chr3 (246-284)||(19297907-19297945)
chr3 (246-284)||(40279293-40279331)
chr3 (246-283)||(32119224-32119261)
chr3 (240-288)||(40169608-40169656)
chr3 (240-284)||(43441268-43441312)
[»] chr2 (4 HSPs)
chr2 (246-288)||(45442320-45442362)
chr2 (239-284)||(42695865-42695910)
chr2 (240-288)||(1497608-1497656)
chr2 (239-283)||(34964118-34964162)
[»] chr1 (9 HSPs)
chr1 (246-284)||(26207282-26207320)
chr1 (246-284)||(32420102-32420140)
chr1 (246-288)||(32906194-32906236)
chr1 (246-288)||(39025113-39025155)
chr1 (246-284)||(49073695-49073733)
chr1 (239-284)||(10631161-10631206)
chr1 (239-284)||(12322928-12322973)
chr1 (239-284)||(24977775-24977820)
chr1 (240-284)||(40718108-40718152)
[»] scaffold0007 (1 HSPs)
scaffold0007 (241-285)||(2840-2884)


Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 37126356 - 37126067
Alignment:
Q  1 ctgaactggtgggacttgatgtggtttggtatcggtgcggtcgtcggctccggaatattcgtgctgaccggacttgaggctaagcagcatgcaggtccgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37126356 ctgaactggtgggacttgatgtggtttggtatcggtgcggtcgtcggctccggaatatttgtgctgaccggacttgaggctaagcagcatgcaggtccgg 37126257  T
Q  101 cagttgtgttgtcatttgtcatctccggcatatctgctttgttatcagtgttttgctatacagagtttgcggtggaaattccggttgcaggtactttctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37126256 cagttgtgttgtcatttgtcatctccggcatatctgctttgttatcagtattttgctatacagagtttgcggtggaaattccggttgcaggtactttctc 37126157  T
Q  201 ttattctcactataatctttcttatgcattatatgatcatt---ggcaaaaatatagttttggtctttgcaaatatgtctcgttttgattt 288  Q
    |||||||||||||||||||||||||||||||||||||||||    ||||||||||  ||||||||  || |||||||||||||||||||||    
T  37126156 ttattctcactataatctttcttatgcattatatgatcatttgcagcaaaaatatgattttggtc-ctgaaaatatgtctcgttttgattt 37126067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 37113618 - 37113405
Alignment:
Q  1 ctgaactggtgggacttgatgtggtttggtatcggtgcggtcgtcggctccggaatattcgtgctgaccggacttgaggctaagcagcatgcaggtccgg 100  Q
    ||||| |||||||||||||||||||| ||||| || || ||| | || || |||||||| ||||| |||||||||||||||| |||| | ||||||||||    
T  37113618 ctgaattggtgggacttgatgtggttcggtatgggcgccgtcattggttctggaatatttgtgcttaccggacttgaggctaggcaggaagcaggtccgg 37113519  T
Q  101 cagttgtgttgtcatttgtcatctccggcatatctgctttgttatcagtgttttgctatacagagtttgcggtggaaattccggttgcaggtactttctc 200  Q
    ||||||| ||||| |||||||||||||| |||||||||||| |||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||    
T  37113518 cagttgtattgtcgtttgtcatctccggtatatctgctttgctatcggtgttttgttatacagaatttgctgtggaaattccggttgcaggtactttctc 37113419  T
Q  201 ttattctcactata 214  Q
    |||  |||||||||    
T  37113418 ttaccctcactata 37113405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 1778561 - 1778606
Alignment:
Q  239 attggcaaaaatatagttttggtctttgcaaatatgtctcgttttg 284  Q
    |||||| ||||||| |||||||||  ||||||||||||||||||||    
T  1778561 attggctaaaatatggttttggtccctgcaaatatgtctcgttttg 1778606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 7186006 - 7185962
Alignment:
Q  240 ttggcaaaaatatagttttggtctttgcaaatatgtctcgttttg 284  Q
    ||||| ||||||| |||||||||  ||||||||||||||||||||    
T  7186006 ttggctaaaatatggttttggtccctgcaaatatgtctcgttttg 7185962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 14489075 - 14489031
Alignment:
Q  240 ttggcaaaaatatagttttggtctttgcaaatatgtctcgttttg 284  Q
    ||||| ||||||| |||||||||  ||||||||||||||||||||    
T  14489075 ttggctaaaatatggttttggtccctgcaaatatgtctcgttttg 14489031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 23939544 - 23939588
Alignment:
Q  239 attggcaaaaatatagttttggtctttgcaaatatgtctcgtttt 283  Q
    |||||| ||||||| |||||||||  |||||||||||||||||||    
T  23939544 attggctaaaatatggttttggtcactgcaaatatgtctcgtttt 23939588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 34963666 - 34963622
Alignment:
Q  240 ttggcaaaaatatagttttggtctttgcaaatatgtctcgttttg 284  Q
    ||||| ||||||| |||||||||  ||||||||||||||||||||    
T  34963666 ttggctaaaatatggttttggtccctgcaaatatgtctcgttttg 34963622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 42132862 - 42132906
Alignment:
Q  240 ttggcaaaaatatagttttggtctttgcaaatatgtctcgttttg 284  Q
    ||||| ||||||| |||||||||  ||||||||||||||||||||    
T  42132862 ttggctaaaatatggttttggtccctgcaaatatgtctcgttttg 42132906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 42133156 - 42133112
Alignment:
Q  240 ttggcaaaaatatagttttggtctttgcaaatatgtctcgttttg 284  Q
    ||||| ||||||| |||||||||  ||||||||||||||||||||    
T  42133156 ttggctaaaatatggttttggtccctgcaaatatgtctcgttttg 42133112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 39520726 - 39520684
Alignment:
Q  246 aaaatatagttttggtctttgcaaatatgtctcgttttgattt 288  Q
    ||||||| ||||||||| |||||||||||||||||||||||||    
T  39520726 aaaatatggttttggtccttgcaaatatgtctcgttttgattt 39520684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 19005602 - 19005644
Alignment:
Q  246 aaaatatagttttggtctttgcaaatatgtctcgttttgattt 288  Q
    |||||||||||||||||  || |||||||||||||||||||||    
T  19005602 aaaatatagttttggtccctgtaaatatgtctcgttttgattt 19005644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 284
Target Start/End: Complemental strand, 28529205 - 28529167
Alignment:
Q  246 aaaatatagttttggtctttgcaaatatgtctcgttttg 284  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  28529205 aaaatatggttttggtctctgcaaatatgtctcgttttg 28529167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 25547492 - 25547444
Alignment:
Q  240 ttggcaaaaatatagttttggtctttgcaaatatgtctcgttttgattt 288  Q
    ||||| ||||||| ||||| |||  ||||||||||||||||||||||||    
T  25547492 ttggctaaaatatggttttagtccctgcaaatatgtctcgttttgattt 25547444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 44403251 - 44403207
Alignment:
Q  240 ttggcaaaaatatagttttggtctttgcaaatatgtctcgttttg 284  Q
    ||||| ||||||| ||||| ||| |||||||||||||||||||||    
T  44403251 ttggctaaaatatggttttagtccttgcaaatatgtctcgttttg 44403207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 15722614 - 15722656
Alignment:
Q  246 aaaatatagttttggtctttgcaaatatgtctcgttttgattt 288  Q
    ||||||| |||||||||| ||||||||||||||||||||||||    
T  15722614 aaaatatggttttggtctatgcaaatatgtctcgttttgattt 15722656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 284
Target Start/End: Complemental strand, 14656256 - 14656218
Alignment:
Q  246 aaaatatagttttggtctttgcaaatatgtctcgttttg 284  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  14656256 aaaatatggttttggtccttgcaaatatgtctcgttttg 14656218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 18024015 - 18024053
Alignment:
Q  246 aaaatatagttttggtctttgcaaatatgtctcgttttg 284  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  18024015 aaaatatggttttggtctttgcaaatatgcctcgttttg 18024053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 31276336 - 31276294
Alignment:
Q  246 aaaatatagttttggtctttgcaaatatgtctcgttttgattt 288  Q
    |||||| ||||||||||  ||||||||||||||||||||||||    
T  31276336 aaaataaagttttggtccctgcaaatatgtctcgttttgattt 31276294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 19690762 - 19690717
Alignment:
Q  239 attggcaaaaatatagttttggtctttgcaaatatgtctcgttttg 284  Q
    |||||| ||||||| |||||||||  ||||||||||||||||||||    
T  19690762 attggcgaaaatatggttttggtccctgcaaatatgtctcgttttg 19690717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 24901237 - 24901281
Alignment:
Q  240 ttggcaaaaatatagttttggtctttgcaaatatgtctcgttttg 284  Q
    ||||| ||||||| |||||||||  ||||||||||||||||||||    
T  24901237 ttggctaaaatatggttttggtccctgcaaatatgtctcgttttg 24901281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 4736209 - 4736247
Alignment:
Q  246 aaaatatagttttggtctttgcaaatatgtctcgttttg 284  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  4736209 aaaatatggttttggtctttgcaaatatgtctcgttttg 4736247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 12145179 - 12145137
Alignment:
Q  246 aaaatatagttttggtctttgcaaatatgtctcgttttgattt 288  Q
    ||||||| |||||||||  ||||||||||||||||||||||||    
T  12145179 aaaatatggttttggtccctgcaaatatgtctcgttttgattt 12145137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 37271702 - 37271660
Alignment:
Q  246 aaaatatagttttggtctttgcaaatatgtctcgttttgattt 288  Q
    ||||||| |||||||||  ||||||||||||||||||||||||    
T  37271702 aaaatatggttttggtccctgcaaatatgtctcgttttgattt 37271660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 38452392 - 38452350
Alignment:
Q  246 aaaatatagttttggtctttgcaaatatgtctcgttttgattt 288  Q
    ||||||| |||||||||  ||||||||||||||||||||||||    
T  38452392 aaaatatggttttggtccctgcaaatatgtctcgttttgattt 38452350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 35928461 - 35928416
Alignment:
Q  239 attggcaaaaatatagttttggtctttgcaaatatgtctcgttttg 284  Q
    |||||| ||||||| |||||||||  ||||||||||||||||||||    
T  35928461 attggctaaaatatggttttggtccctgcaaatatgtctcgttttg 35928416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 36973350 - 36973395
Alignment:
Q  239 attggcaaaaatatagttttggtctttgcaaatatgtctcgttttg 284  Q
    |||||| ||||||| |||||||||| | ||||||||||||||||||    
T  36973350 attggctaaaatatggttttggtctctccaaatatgtctcgttttg 36973395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 28449210 - 28449168
Alignment:
Q  246 aaaatatagttttggtctttgcaaatatgtctcgttttgattt 288  Q
    ||||||| ||||||||| |||||||||||||||||||||||||    
T  28449210 aaaatatggttttggtccttgcaaatatgtctcgttttgattt 28449168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 11693117 - 11693075
Alignment:
Q  246 aaaatatagttttggtctttgcaaatatgtctcgttttgattt 288  Q
    ||||||| |||||||||  ||||||||||||||||||||||||    
T  11693117 aaaatatggttttggtccctgcaaatatgtctcgttttgattt 11693075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 47022744 - 47022782
Alignment:
Q  246 aaaatatagttttggtctttgcaaatatgtctcgttttg 284  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  47022744 aaaatatggttttggtccttgcaaatatgtctcgttttg 47022782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 52543426 - 52543464
Alignment:
Q  246 aaaatatagttttggtctttgcaaatatgtctcgttttg 284  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  52543426 aaaatatggttttggtccttgcaaatatgtctcgttttg 52543464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 284
Target Start/End: Complemental strand, 47532667 - 47532630
Alignment:
Q  247 aaatatagttttggtctttgcaaatatgtctcgttttg 284  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  47532667 aaatatggttttggtccttgcaaatatgtctcgttttg 47532630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 13073757 - 13073801
Alignment:
Q  240 ttggcaaaaatatagttttggtctttgcaaatatgtctcgttttg 284  Q
    ||||| ||||||| |||||||||  ||||||||||||||||||||    
T  13073757 ttggctaaaatatggttttggtccctgcaaatatgtctcgttttg 13073801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 42824093 - 42824045
Alignment:
Q  240 ttggcaaaaatatagttttggtctttgcaaatatgtctcgttttgattt 288  Q
    ||||| ||||||| |||||||||  ||||||||||||| ||||||||||    
T  42824093 ttggctaaaatatggttttggtccctgcaaatatgtcttgttttgattt 42824045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 29678028 - 29678066
Alignment:
Q  246 aaaatatagttttggtctttgcaaatatgtctcgttttg 284  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  29678028 aaaatatagttttggtctttgcaaatatgcctcgttttg 29678066  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 20644503 - 20644551
Alignment:
Q  240 ttggcaaaaatatagttttggtctttgcaaatatgtctcgttttgattt 288  Q
    ||||| |||||||||||||||||  |||||||||||||| |||||||||    
T  20644503 ttggctaaaatatagttttggtccctgcaaatatgtctcattttgattt 20644551  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 284
Target Start/End: Complemental strand, 19297945 - 19297907
Alignment:
Q  246 aaaatatagttttggtctttgcaaatatgtctcgttttg 284  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  19297945 aaaatatagttttggtccttgtaaatatgtctcgttttg 19297907  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 284
Target Start/End: Complemental strand, 40279331 - 40279293
Alignment:
Q  246 aaaatatagttttggtctttgcaaatatgtctcgttttg 284  Q
    ||||||| |||||||||||||||||||||||| ||||||    
T  40279331 aaaatatggttttggtctttgcaaatatgtcttgttttg 40279293  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 32119224 - 32119261
Alignment:
Q  246 aaaatatagttttggtctttgcaaatatgtctcgtttt 283  Q
    |||||||||||||||||  |||||||||||||||||||    
T  32119224 aaaatatagttttggtccctgcaaatatgtctcgtttt 32119261  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 40169656 - 40169608
Alignment:
Q  240 ttggcaaaaatatagttttggtctttgcaaatatgtctcgttttgattt 288  Q
    ||||| ||||||| ||||| |||  ||||||||||||||||||||||||    
T  40169656 ttggctaaaatatggttttagtccctgcaaatatgtctcgttttgattt 40169608  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 43441268 - 43441312
Alignment:
Q  240 ttggcaaaaatatagttttggtctttgcaaatatgtctcgttttg 284  Q
    ||||| ||||||| |||||||||  ||||||||||||||||||||    
T  43441268 ttggctaaaatatggttttggtccctgcaaatatgtctcgttttg 43441312  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 45442320 - 45442362
Alignment:
Q  246 aaaatatagttttggtctttgcaaatatgtctcgttttgattt 288  Q
    ||||||| ||||| |||| ||||||||||||||||||||||||    
T  45442320 aaaatatggttttagtctctgcaaatatgtctcgttttgattt 45442362  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 42695865 - 42695910
Alignment:
Q  239 attggcaaaaatatagttttggtctttgcaaatatgtctcgttttg 284  Q
    |||||| ||||||| |||||||||  ||||||||||||||||||||    
T  42695865 attggctaaaatatggttttggtccctgcaaatatgtctcgttttg 42695910  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 1497608 - 1497656
Alignment:
Q  240 ttggcaaaaatatagttttggtctttgcaaatatgtctcgttttgattt 288  Q
    ||||| ||||||| ||||| ||| ||||||||||| |||||||||||||    
T  1497608 ttggctaaaatatggttttagtccttgcaaatatgcctcgttttgattt 1497656  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 34964162 - 34964118
Alignment:
Q  239 attggcaaaaatatagttttggtctttgcaaatatgtctcgtttt 283  Q
    |||||| ||||||| |||||||||  |||||||||||||||||||    
T  34964162 attggctaaaatatggttttggtccctgcaaatatgtctcgtttt 34964118  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 26207282 - 26207320
Alignment:
Q  246 aaaatatagttttggtctttgcaaatatgtctcgttttg 284  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  26207282 aaaatatggttttggtccttgcaaatatgtctcgttttg 26207320  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 32420102 - 32420140
Alignment:
Q  246 aaaatatagttttggtctttgcaaatatgtctcgttttg 284  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  32420102 aaaatatggttttggtccttgcaaatatgtctcgttttg 32420140  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 32906236 - 32906194
Alignment:
Q  246 aaaatatagttttggtctttgcaaatatgtctcgttttgattt 288  Q
    |||||||  |||||||| |||||||||||||||||||||||||    
T  32906236 aaaatatgattttggtccttgcaaatatgtctcgttttgattt 32906194  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 39025113 - 39025155
Alignment:
Q  246 aaaatatagttttggtctttgcaaatatgtctcgttttgattt 288  Q
    ||||||| |||||||||  ||||||||||||||||||||||||    
T  39025113 aaaatatggttttggtccctgcaaatatgtctcgttttgattt 39025155  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 49073695 - 49073733
Alignment:
Q  246 aaaatatagttttggtctttgcaaatatgtctcgttttg 284  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  49073695 aaaatatggttttggtccttgcaaatatgtctcgttttg 49073733  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 10631161 - 10631206
Alignment:
Q  239 attggcaaaaatatagttttggtctttgcaaatatgtctcgttttg 284  Q
    |||||| ||||||| |||||||||  ||||||||||||||||||||    
T  10631161 attggctaaaatatggttttggtccctgcaaatatgtctcgttttg 10631206  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 12322973 - 12322928
Alignment:
Q  239 attggcaaaaatatagttttggtctttgcaaatatgtctcgttttg 284  Q
    |||||| ||||||| |||||||||  ||||||||||||||||||||    
T  12322973 attggctaaaatatggttttggtccctgcaaatatgtctcgttttg 12322928  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 24977775 - 24977820
Alignment:
Q  239 attggcaaaaatatagttttggtctttgcaaatatgtctcgttttg 284  Q
    |||||| ||||||| |||||||||  ||||||||||||||||||||    
T  24977775 attggctaaaatatggttttggtccctgcaaatatgtctcgttttg 24977820  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 40718108 - 40718152
Alignment:
Q  240 ttggcaaaaatatagttttggtctttgcaaatatgtctcgttttg 284  Q
    ||||| ||||||| |||||||||  ||||||||||||||||||||    
T  40718108 ttggctaaaatatggttttggtccctgcaaatatgtctcgttttg 40718152  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 285
Target Start/End: Complemental strand, 2884 - 2840
Alignment:
Q  241 tggcaaaaatatagttttggtctttgcaaatatgtctcgttttga 285  Q
    |||| ||||||| |||||||||  |||||||||||||||||||||    
T  2884 tggctaaaatatggttttggtccctgcaaatatgtctcgttttga 2840  T

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