View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19670_low_12 (Length: 271)

Name: NF19670_low_12
Description: NF19670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19670_low_12
NF19670_low_12
[»] chr1 (3 HSPs)
chr1 (18-250)||(44128341-44128573)
chr1 (18-250)||(44132546-44132778)
chr1 (18-250)||(44140968-44141200)
[»] chr5 (7 HSPs)
chr5 (103-250)||(1504829-1504976)
chr5 (136-250)||(1482078-1482192)
chr5 (136-250)||(1492053-1492167)
chr5 (136-247)||(1477884-1477995)
chr5 (137-250)||(1509009-1509123)
chr5 (140-250)||(1486559-1486669)
chr5 (135-205)||(1499124-1499194)
[»] chr7 (6 HSPs)
chr7 (110-250)||(46707111-46707251)
chr7 (136-250)||(5310282-5310396)
chr7 (136-250)||(5314996-5315110)
chr7 (136-250)||(5302381-5302495)
chr7 (136-250)||(5284193-5284307)
chr7 (136-250)||(5289820-5289934)
[»] chr3 (2 HSPs)
chr3 (137-250)||(37859487-37859600)
chr3 (137-241)||(37863522-37863626)
[»] chr2 (1 HSPs)
chr2 (140-207)||(24163956-24164023)


Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 44128341 - 44128573
Alignment:
Q  18 gtgtaagtattttttccctctaccatagatactttccatttaaatatattttgctatctttacattggtttcttaacacccaagttttgttgaactaata 117  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44128341 gtgtaagtattttttccctctaccttagatactttccatttaaatatattttgctatctttacattggtttcttaacacccaagttttgttgaactaata 44128440  T
Q  118 tcatcttttcataattcccttcaggtgataaatctatgatcaagaggagatatatgtacctaacagaggagattttgaaagagaatcctagtgtttgtga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44128441 tcatcttttcataattcccttcaggtgataaatctatgatcaagaggagatatatgtacctaacagaggagattttgaaagagaatcctagtgtttgtga 44128540  T
Q  218 atacatggcaccttcattggatgctaggcaaga 250  Q
    |||||||||||||||||||||||||||||||||    
T  44128541 atacatggcaccttcattggatgctaggcaaga 44128573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 44132546 - 44132778
Alignment:
Q  18 gtgtaagtattttttccctctaccatagatactttccatttaaatatattttgctatctttacattggtttcttaacacccaagttttgttgaactaata 117  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44132546 gtgtaagtattttttccctctaccttagatactttccatttaaatatattttgctatctttacattggtttcttaacacccaagttttgttgaactaata 44132645  T
Q  118 tcatcttttcataattcccttcaggtgataaatctatgatcaagaggagatatatgtacctaacagaggagattttgaaagagaatcctagtgtttgtga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44132646 tcatcttttcataattcccttcaggtgataaatctatgatcaagaggagatatatgtacctaacagaggagattttgaaagagaatcctagtgtttgtga 44132745  T
Q  218 atacatggcaccttcattggatgctaggcaaga 250  Q
    |||||||||||||||||||||||||||||||||    
T  44132746 atacatggcaccttcattggatgctaggcaaga 44132778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 44140968 - 44141200
Alignment:
Q  18 gtgtaagtattttttccctctaccatagatactttccatttaaatatattttgctatctttacattggtttcttaacacccaagttttgttgaactaata 117  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44140968 gtgtaagtattttttccctctaccttagatactttccatttaaatatattttgctatctttacattggtttcttaacacccaagttttgttgaactaata 44141067  T
Q  118 tcatcttttcataattcccttcaggtgataaatctatgatcaagaggagatatatgtacctaacagaggagattttgaaagagaatcctagtgtttgtga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44141068 tcatcttttcataattcccttcaggtgataaatctatgatcaagaggagatatatgtacctaacagaggagattttgaaagagaatcctagtgtttgtga 44141167  T
Q  218 atacatggcaccttcattggatgctaggcaaga 250  Q
    |||||||||||||||||||||||||||||||||    
T  44141168 atacatggcaccttcattggatgctaggcaaga 44141200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 103 - 250
Target Start/End: Original strand, 1504829 - 1504976
Alignment:
Q  103 tttgttgaactaatatcatcttttcataattcccttcaggtgataaatctatgatcaagaggagatatatgtacctaacagaggagattttgaaagagaa 202  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||    
T  1504829 tttgttgaactaatatcatctcttcataattaccttcaggtgataaatctatgattaagagaagatacatgtacctaacagaggagattttaaaagagaa 1504928  T
Q  203 tcctagtgtttgtgaatacatggcaccttcattggatgctaggcaaga 250  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1504929 tcccagtgtttgtgaatacatggcaccttcattggatgctaggcaaga 1504976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 136 - 250
Target Start/End: Original strand, 1482078 - 1482192
Alignment:
Q  136 cttcaggtgataaatctatgatcaagaggagatatatgtacctaacagaggagattttgaaagagaatcctagtgtttgtgaatacatggcaccttcatt 235  Q
    |||||||||||||||||||||||||||||||||| ||||| || || || |||||||||||||| ||||||||||| || ||||||||||||||||||||    
T  1482078 cttcaggtgataaatctatgatcaagaggagatacatgtatcttactgaagagattttgaaagaaaatcctagtgtatgcgaatacatggcaccttcatt 1482177  T
Q  236 ggatgctaggcaaga 250  Q
    |||||||||||||||    
T  1482178 ggatgctaggcaaga 1482192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 136 - 250
Target Start/End: Original strand, 1492053 - 1492167
Alignment:
Q  136 cttcaggtgataaatctatgatcaagaggagatatatgtacctaacagaggagattttgaaagagaatcctagtgtttgtgaatacatggcaccttcatt 235  Q
    |||||||||| ||||| |||||||| || ||||| ||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  1492053 cttcaggtgacaaatccatgatcaaaagaagatacatgtatctaacagaggagattttaaaagagaatcctaatgtttgtgaatacatggcaccttcatt 1492152  T
Q  236 ggatgctaggcaaga 250  Q
    ||||||||| |||||    
T  1492153 ggatgctagacaaga 1492167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 136 - 247
Target Start/End: Original strand, 1477884 - 1477995
Alignment:
Q  136 cttcaggtgataaatctatgatcaagaggagatatatgtacctaacagaggagattttgaaagagaatcctagtgtttgtgaatacatggcaccttcatt 235  Q
    |||||||||||||||| ||||||||||||||||| ||||| || || || || ||||||||||| ||||| ||||| ||||||||||||||||| |||||    
T  1477884 cttcaggtgataaatccatgatcaagaggagatacatgtatcttaccgaagaaattttgaaagaaaatccaagtgtatgtgaatacatggcaccgtcatt 1477983  T
Q  236 ggatgctaggca 247  Q
    ||||||||||||    
T  1477984 ggatgctaggca 1477995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 250
Target Start/End: Original strand, 1509009 - 1509123
Alignment:
Q  137 ttcaggtgataaatctatgatc-aagaggagatatatgtacctaacagaggagattttgaaagagaatcctagtgtttgtgaatacatggcaccttcatt 235  Q
    ||||||||||||||| |||||| ||||||||||| |||||  | ||||| |||||||||||||||||||| | ||||||||  || | |||||| |||||    
T  1509009 ttcaggtgataaatcgatgatctaagaggagatacatgtatattacagaagagattttgaaagagaatcccaatgtttgtgcttatacggcaccatcatt 1509108  T
Q  236 ggatgctaggcaaga 250  Q
    |||||||||||||||    
T  1509109 ggatgctaggcaaga 1509123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 250
Target Start/End: Original strand, 1486559 - 1486669
Alignment:
Q  140 aggtgataaatctatgatcaagaggagatatatgtacctaacagaggagattttgaaagagaatcctagtgtttgtgaatacatggcaccttcattggat 239  Q
    |||||| ||||| ||||||||||| ||||| ||||||| |||||| |  ||||||||||||||||||| | ||||    || ||| ||||||| ||||||    
T  1486559 aggtgaaaaatcaatgatcaagagaagatacatgtaccaaacagaagctattttgaaagagaatcctaatttttgcacttatatgacaccttctttggat 1486658  T
Q  240 gctaggcaaga 250  Q
    |||||||||||    
T  1486659 gctaggcaaga 1486669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 1499124 - 1499194
Alignment:
Q  135 ccttcaggtgataaatctatgatcaagaggagatatatgtacctaacagaggagattttgaaagagaatcc 205  Q
    |||| |||||||||||||||||| | || |||| || ||||| ||||||| |||||||||||||| |||||    
T  1499124 cctttaggtgataaatctatgattaggaagagacatgtgtacttaacagaagagattttgaaagataatcc 1499194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 7e-55; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 110 - 250
Target Start/End: Complemental strand, 46707251 - 46707111
Alignment:
Q  110 aactaatatcatcttttcataattcccttcaggtgataaatctatgatcaagaggagatatatgtacctaacagaggagattttgaaagagaatcctagt 209  Q
    ||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||    
T  46707251 aactaatatcatcctatcataattaccttcaggtgataaatctatgatcaagaggagatacatgtacctaacataggagattttgaaagagaatcccagt 46707152  T
Q  210 gtttgtgaatacatggcaccttcattggatgctaggcaaga 250  Q
    ||||||||||| |||||||||||||||||||| ||||||||    
T  46707151 gtttgtgaatatatggcaccttcattggatgccaggcaaga 46707111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 136 - 250
Target Start/End: Original strand, 5310282 - 5310396
Alignment:
Q  136 cttcaggtgataaatctatgatcaagaggagatatatgtacctaacagaggagattttgaaagagaatcctagtgtttgtgaatacatggcaccttcatt 235  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5310282 cttcaggtgataaatctatgatcaagaggagatacatgtatctaacagaggagattttgaaagaaaatcctagtgtttgtgaatacatggcaccttcatt 5310381  T
Q  236 ggatgctaggcaaga 250  Q
    |||||| ||||||||    
T  5310382 ggatgcaaggcaaga 5310396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 136 - 250
Target Start/End: Original strand, 5314996 - 5315110
Alignment:
Q  136 cttcaggtgataaatctatgatcaagaggagatatatgtacctaacagaggagattttgaaagagaatcctagtgtttgtgaatacatggcaccttcatt 235  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||| |||||||||||||||||||||||||| ||||||||    
T  5314996 cttcaggtgataaatctatgatcaagaggagatacatgtatctaacagaagaaattttgaaagaaaatcctagtgtttgtgaatacatggccccttcatt 5315095  T
Q  236 ggatgctaggcaaga 250  Q
    |||||||||||||||    
T  5315096 ggatgctaggcaaga 5315110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 136 - 250
Target Start/End: Original strand, 5302381 - 5302495
Alignment:
Q  136 cttcaggtgataaatctatgatcaagaggagatatatgtacctaacagaggagattttgaaagagaatcctagtgtttgtgaatacatggcaccttcatt 235  Q
    |||||||||||||||| ||||||||||||||||| ||||| |||||||| || ||||||||||| |||||||||||||||||||||||||| ||||||||    
T  5302381 cttcaggtgataaatccatgatcaagaggagatacatgtatctaacagaagaaattttgaaagaaaatcctagtgtttgtgaatacatggccccttcatt 5302480  T
Q  236 ggatgctaggcaaga 250  Q
    |||||||||||||||    
T  5302481 ggatgctaggcaaga 5302495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 136 - 250
Target Start/End: Original strand, 5284193 - 5284307
Alignment:
Q  136 cttcaggtgataaatctatgatcaagaggagatatatgtacctaacagaggagattttgaaagagaatcctagtgtttgtgaatacatggcaccttcatt 235  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||| | |||||||||||||||||||||||||| ||||||||    
T  5284193 cttcaggtgataaatctatgatcaagaggagatacatgtatctaacagaagaaattttgaaaaaaaatcctagtgtttgtgaatacatggccccttcatt 5284292  T
Q  236 ggatgctaggcaaga 250  Q
    |||||| ||||||||    
T  5284293 ggatgcaaggcaaga 5284307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 136 - 250
Target Start/End: Complemental strand, 5289934 - 5289820
Alignment:
Q  136 cttcaggtgataaatctatgatcaagaggagatatatgtacctaacagaggagattttgaaagagaatcctagtgtttgtgaatacatggcaccttcatt 235  Q
    |||||||||||||||| ||||||||||||||||| ||||| |||||||| || ||||||||||| ||||| |||||||||||||||||||| ||||||||    
T  5289934 cttcaggtgataaatccatgatcaagaggagatacatgtatctaacagaagaaattttgaaagaaaatccaagtgtttgtgaatacatggccccttcatt 5289835  T
Q  236 ggatgctaggcaaga 250  Q
    |||||||||||||||    
T  5289834 ggatgctaggcaaga 5289820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 137 - 250
Target Start/End: Complemental strand, 37859600 - 37859487
Alignment:
Q  137 ttcaggtgataaatctatgatcaagaggagatatatgtacctaacagaggagattttgaaagagaatcctagtgtttgtgaatacatggcaccttcattg 236  Q
    |||||||||||| || |||||||||| |||||| |||||| | ||||| |||||  ||||||||||||| ||||| || || ||||||||||||||||||    
T  37859600 ttcaggtgataagtcaatgatcaagaagagatacatgtacttgacagaagagatcctgaaagagaatccaagtgtatgcgagtacatggcaccttcattg 37859501  T
Q  237 gatgctaggcaaga 250  Q
    ||||| || |||||    
T  37859500 gatgcaagacaaga 37859487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 37863626 - 37863522
Alignment:
Q  137 ttcaggtgataaatctatgatcaagaggagatatatgtacctaacagaggagattttgaaagagaatcctagtgtttgtgaatacatggcaccttcattg 236  Q
    ||||||||||||||||||||| |||| |||||| ||| |  | || || ||||||||||| |||||||||||| | ||||| || ||||||||||| |||    
T  37863626 ttcaggtgataaatctatgattaagaagagatacatgcatttgactgaagagattttgaaggagaatcctagtttatgtgagtatatggcaccttcgttg 37863527  T
Q  237 gatgc 241  Q
    |||||    
T  37863526 gatgc 37863522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 24164023 - 24163956
Alignment:
Q  140 aggtgataaatctatgatcaagaggagatatatgtacctaacagaggagattttgaaagagaatccta 207  Q
    |||||||||| ||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||    
T  24164023 aggtgataaaactatgatcaagaggagatacatgtacctaaccgaagagattttgaaagagaatccta 24163956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University