View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19670_low_13 (Length: 251)

Name: NF19670_low_13
Description: NF19670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19670_low_13
NF19670_low_13
[»] chr5 (37 HSPs)
chr5 (15-233)||(24662040-24662258)
chr5 (26-189)||(18208124-18208287)
chr5 (54-189)||(18937808-18937945)
chr5 (68-189)||(22755582-22755704)
chr5 (56-189)||(34487698-34487832)
chr5 (26-159)||(19283730-19283863)
chr5 (15-173)||(24266821-24266977)
chr5 (15-173)||(24343452-24343608)
chr5 (187-232)||(15469928-15469973)
chr5 (44-136)||(36175247-36175340)
chr5 (53-136)||(15690889-15690975)
chr5 (44-189)||(26120925-26121070)
chr5 (189-229)||(24267018-24267058)
chr5 (189-229)||(24343649-24343689)
chr5 (189-232)||(18208312-18208355)
chr5 (187-230)||(25550566-25550609)
chr5 (33-97)||(17432035-17432101)
chr5 (187-229)||(20419951-20419993)
chr5 (44-132)||(24260633-24260723)
chr5 (187-232)||(18937740-18937785)
chr5 (187-232)||(19086241-19086286)
chr5 (192-228)||(15544047-15544083)
chr5 (192-232)||(26121390-26121430)
chr5 (184-232)||(36175126-36175174)
chr5 (76-189)||(17171479-17171591)
chr5 (187-225)||(19004288-19004326)
chr5 (28-127)||(20744545-20744647)
chr5 (187-225)||(20744873-20744911)
chr5 (187-225)||(24140442-24140479)
chr5 (187-232)||(17171615-17171660)
chr5 (191-224)||(17769461-17769494)
chr5 (187-232)||(19051541-19051586)
chr5 (187-228)||(23380319-23380360)
chr5 (39-123)||(24265362-24265447)
chr5 (39-123)||(24341993-24342078)
chr5 (152-189)||(24852173-24852210)
chr5 (192-232)||(26110528-26110568)
[»] chr3 (41 HSPs)
chr3 (22-173)||(17155869-17156020)
chr3 (44-173)||(21303246-21303376)
chr3 (34-188)||(21325402-21325558)
chr3 (39-171)||(2723722-2723855)
chr3 (44-173)||(16245621-16245751)
chr3 (26-139)||(41508477-41508592)
chr3 (28-189)||(12805766-12805928)
chr3 (26-186)||(2167491-2167652)
chr3 (54-189)||(3116321-3116457)
chr3 (44-135)||(18736564-18736657)
chr3 (187-232)||(21301910-21301955)
chr3 (44-108)||(932884-932950)
chr3 (187-232)||(12805952-12805997)
chr3 (187-232)||(41508359-41508404)
chr3 (27-108)||(8765247-8765330)
chr3 (187-230)||(10917912-10917955)
chr3 (187-229)||(3116480-3116522)
chr3 (187-229)||(10744897-10744939)
chr3 (187-232)||(6289895-6289940)
chr3 (53-189)||(10744963-10745099)
chr3 (187-232)||(16245791-16245836)
chr3 (101-173)||(8319116-8319188)
chr3 (27-111)||(12754797-12754884)
chr3 (27-108)||(8770149-8770232)
chr3 (190-229)||(18736736-18736775)
chr3 (187-230)||(21325334-21325377)
chr3 (197-232)||(22245342-22245377)
chr3 (189-232)||(31286078-31286121)
chr3 (187-229)||(5508331-5508373)
chr3 (186-232)||(12411143-12411189)
chr3 (151-189)||(17438431-17438469)
chr3 (17-108)||(4650367-4650460)
chr3 (187-228)||(12759383-12759424)
chr3 (187-232)||(19171896-19171941)
chr3 (189-230)||(21825932-21825973)
chr3 (192-232)||(7147980-7148020)
chr3 (15-90)||(8267091-8267167)
chr3 (187-231)||(18458486-18458530)
chr3 (16-72)||(19909836-19909892)
chr3 (26-113)||(21825743-21825831)
chr3 (187-223)||(22349410-22349446)
[»] chr4 (49 HSPs)
chr4 (44-189)||(17672063-17672209)
chr4 (58-182)||(5679273-5679397)
chr4 (15-189)||(19092356-19092531)
chr4 (26-162)||(14648982-14649120)
chr4 (68-189)||(12578183-12578304)
chr4 (45-163)||(17951189-17951308)
chr4 (48-163)||(17955044-17955160)
chr4 (48-189)||(19636483-19636624)
chr4 (57-162)||(19929579-19929686)
chr4 (100-173)||(11490609-11490681)
chr4 (187-232)||(9737571-9737616)
chr4 (187-232)||(17671994-17672039)
chr4 (187-232)||(20829800-20829845)
chr4 (15-189)||(22357394-22357570)
chr4 (187-230)||(13692731-13692774)
chr4 (187-230)||(14648889-14648932)
chr4 (92-142)||(22175904-22175954)
chr4 (26-189)||(25121100-25121264)
chr4 (186-229)||(5679200-5679243)
chr4 (187-229)||(13128936-13128978)
chr4 (52-127)||(15164887-15164965)
chr4 (26-194)||(17337008-17337178)
chr4 (186-232)||(19882632-19882678)
chr4 (187-232)||(12318425-12318470)
chr4 (187-224)||(13908854-13908891)
chr4 (187-224)||(17709757-17709794)
chr4 (187-232)||(17951358-17951403)
chr4 (187-232)||(17955210-17955255)
chr4 (187-232)||(19562240-19562285)
chr4 (192-232)||(9052666-9052706)
chr4 (187-231)||(12578328-12578372)
chr4 (187-231)||(15047121-15047165)
chr4 (187-231)||(15107259-15107303)
chr4 (187-227)||(22176024-22176064)
chr4 (187-231)||(40227770-40227813)
chr4 (18-107)||(17709896-17709987)
chr4 (187-230)||(19092289-19092332)
chr4 (189-228)||(19900576-19900615)
chr4 (44-135)||(24639352-24639446)
chr4 (189-232)||(25121289-25121332)
chr4 (187-232)||(11490524-11490569)
chr4 (187-224)||(13587231-13587268)
chr4 (187-224)||(20315000-20315037)
chr4 (187-232)||(21323937-21323982)
chr4 (192-228)||(10107007-10107043)
chr4 (187-231)||(11700631-11700675)
chr4 (191-223)||(19492766-19492798)
chr4 (187-227)||(19929737-19929777)
chr4 (26-139)||(26115779-26115895)
[»] chr2 (35 HSPs)
chr2 (36-189)||(32085524-32085678)
chr2 (28-189)||(20174512-20174673)
chr2 (15-188)||(25885324-25885497)
chr2 (45-189)||(25618617-25618762)
chr2 (26-189)||(23011637-23011801)
chr2 (187-232)||(29719293-29719338)
chr2 (93-189)||(28606120-28606216)
chr2 (57-163)||(29027583-29027690)
chr2 (54-169)||(11382654-11382771)
chr2 (187-232)||(25888282-25888327)
chr2 (188-232)||(15339230-15339274)
chr2 (187-230)||(20174697-20174740)
chr2 (187-230)||(45553124-45553167)
chr2 (190-228)||(8447114-8447152)
chr2 (187-225)||(17743538-17743576)
chr2 (187-225)||(27909181-27909219)
chr2 (187-228)||(8503132-8503173)
chr2 (54-138)||(25887805-25887893)
chr2 (187-232)||(32085455-32085500)
chr2 (60-189)||(45621789-45621919)
chr2 (26-108)||(27908992-27909076)
chr2 (189-228)||(12557772-12557811)
chr2 (26-108)||(23933419-23933502)
chr2 (27-108)||(28925663-28925746)
chr2 (187-225)||(25196010-25196047)
chr2 (27-189)||(29719106-29719269)
chr2 (26-108)||(30411808-30411893)
chr2 (152-189)||(5777277-5777314)
chr2 (27-68)||(17198040-17198081)
chr2 (36-108)||(17890079-17890152)
chr2 (26-108)||(26603233-26603317)
chr2 (187-232)||(26603412-26603457)
chr2 (190-230)||(12953359-12953399)
chr2 (192-232)||(27418349-27418389)
chr2 (188-232)||(45621944-45621988)
[»] chr8 (27 HSPs)
chr8 (45-189)||(14528210-14528355)
chr8 (26-163)||(13697942-13698079)
chr8 (22-163)||(25182297-25182440)
chr8 (44-186)||(34497179-34497323)
chr8 (100-189)||(30806441-30806530)
chr8 (33-189)||(44010904-44011062)
chr8 (187-231)||(29382423-29382467)
chr8 (187-232)||(14528141-14528186)
chr8 (69-186)||(19786795-19786912)
chr8 (187-231)||(30235370-30235414)
chr8 (187-232)||(5850933-5850978)
chr8 (187-232)||(13315054-13315098)
chr8 (187-232)||(24114344-24114389)
chr8 (187-228)||(26008019-26008060)
chr8 (188-232)||(19786723-19786767)
chr8 (152-192)||(24904691-24904731)
chr8 (186-230)||(34497109-34497153)
chr8 (190-229)||(13697857-13697896)
chr8 (189-228)||(31288354-31288393)
chr8 (189-230)||(5052985-5053026)
chr8 (187-232)||(6884950-6884995)
chr8 (187-232)||(17976611-17976656)
chr8 (189-230)||(24269592-24269633)
chr8 (187-232)||(28276819-28276864)
chr8 (187-232)||(30806559-30806604)
chr8 (187-227)||(24904630-24904670)
chr8 (187-219)||(30783803-30783835)
[»] chr6 (51 HSPs)
chr6 (44-173)||(8241352-8241481)
chr6 (35-189)||(15466430-15466585)
chr6 (54-190)||(4339795-4339932)
chr6 (53-173)||(9838433-9838554)
chr6 (26-189)||(12183204-12183369)
chr6 (36-189)||(22567901-22568054)
chr6 (44-189)||(23645659-23645805)
chr6 (71-189)||(28933580-28933698)
chr6 (44-190)||(8039028-8039178)
chr6 (69-187)||(11177013-11177131)
chr6 (36-189)||(6630574-6630730)
chr6 (187-232)||(9726014-9726059)
chr6 (189-232)||(15466362-15466405)
chr6 (187-232)||(12183393-12183438)
chr6 (187-232)||(17729144-17729189)
chr6 (187-232)||(21672497-21672542)
chr6 (187-232)||(21907424-21907469)
chr6 (187-232)||(25927365-25927410)
chr6 (187-232)||(27737751-27737796)
chr6 (27-189)||(21907493-21907659)
chr6 (189-232)||(8039195-8039238)
chr6 (187-230)||(19244579-19244622)
chr6 (24-189)||(27737560-27737727)
chr6 (187-229)||(5624635-5624677)
chr6 (187-229)||(14079506-14079548)
chr6 (50-142)||(19244681-19244775)
chr6 (44-108)||(22813612-22813678)
chr6 (187-232)||(8241269-8241314)
chr6 (187-232)||(21679913-21679958)
chr6 (65-169)||(21688709-21688813)
chr6 (187-228)||(21932114-21932155)
chr6 (187-232)||(23143714-23143759)
chr6 (187-223)||(20005941-20005977)
chr6 (187-231)||(20145122-20145166)
chr6 (187-231)||(22187673-22187717)
chr6 (188-232)||(22567832-22567876)
chr6 (44-182)||(25927197-25927334)
chr6 (50-136)||(24252128-24252215)
chr6 (27-108)||(27124369-27124452)
chr6 (187-222)||(27124554-27124589)
chr6 (187-229)||(2586716-2586758)
chr6 (190-228)||(20722240-20722278)
chr6 (187-232)||(7543022-7543067)
chr6 (187-232)||(11176942-11176987)
chr6 (187-232)||(18075450-18075495)
chr6 (27-108)||(20005792-20005876)
chr6 (151-188)||(25781852-25781889)
chr6 (187-223)||(9516786-9516822)
chr6 (187-227)||(20002444-20002484)
chr6 (187-219)||(23645829-23645861)
chr6 (17-107)||(24657333-24657425)
[»] scaffold0622 (2 HSPs)
scaffold0622 (26-189)||(789-953)
scaffold0622 (187-230)||(722-765)
[»] chr1 (41 HSPs)
chr1 (15-181)||(22664275-22664443)
chr1 (44-160)||(18100905-18101022)
chr1 (44-188)||(33190739-33190884)
chr1 (27-175)||(15807895-15808044)
chr1 (44-171)||(28008184-28008312)
chr1 (18-188)||(9787745-9787916)
chr1 (55-172)||(24281355-24281472)
chr1 (102-189)||(147692-147778)
chr1 (54-135)||(12012715-12012797)
chr1 (33-149)||(17121381-17121499)
chr1 (187-232)||(17359154-17359199)
chr1 (187-231)||(23038073-23038117)
chr1 (187-229)||(32383060-32383102)
chr1 (187-232)||(21449081-21449126)
chr1 (69-189)||(21847694-21847814)
chr1 (26-189)||(24214605-24214763)
chr1 (187-232)||(27117780-27117825)
chr1 (190-229)||(21847629-21847668)
chr1 (189-228)||(26540892-26540931)
chr1 (187-225)||(15544028-15544066)
chr1 (192-230)||(16359865-16359903)
chr1 (190-232)||(17837509-17837551)
chr1 (187-229)||(22664201-22664243)
chr1 (187-229)||(24281272-24281314)
chr1 (187-232)||(3591715-3591760)
chr1 (187-232)||(9787941-9787986)
chr1 (187-232)||(15813216-15813261)
chr1 (54-189)||(23037913-23038050)
chr1 (187-232)||(24306367-24306412)
chr1 (187-231)||(13345398-13345442)
chr1 (116-189)||(13345302-13345374)
chr1 (26-81)||(25961039-25961094)
chr1 (187-225)||(12208600-12208638)
chr1 (151-189)||(17610256-17610294)
chr1 (187-225)||(18736302-18736340)
chr1 (187-225)||(25405692-25405730)
chr1 (26-97)||(12208754-12208827)
chr1 (68-189)||(16787644-16787764)
chr1 (190-223)||(17610321-17610354)
chr1 (187-231)||(12012862-12012906)
chr1 (44-108)||(25405522-25405588)
[»] scaffold0427 (1 HSPs)
scaffold0427 (15-188)||(2681-2855)
[»] scaffold0062 (1 HSPs)
scaffold0062 (26-189)||(43100-43265)
[»] chr7 (65 HSPs)
chr7 (36-173)||(3734673-3734811)
chr7 (26-189)||(17153027-17153192)
chr7 (57-189)||(7318334-7318468)
chr7 (36-161)||(6013682-6013808)
chr7 (26-189)||(18662502-18662665)
chr7 (27-189)||(10586898-10587062)
chr7 (28-189)||(4785897-4786064)
chr7 (53-162)||(8313293-8313403)
chr7 (82-189)||(4986616-4986723)
chr7 (82-189)||(4990714-4990821)
chr7 (53-135)||(7492163-7492248)
chr7 (47-173)||(1587758-1587884)
chr7 (109-189)||(4818897-4818977)
chr7 (24-139)||(9131019-9131138)
chr7 (54-189)||(9574468-9574604)
chr7 (53-163)||(1584319-1584428)
chr7 (48-189)||(3190957-3191097)
chr7 (187-232)||(7318265-7318310)
chr7 (187-231)||(10587086-10587130)
chr7 (26-133)||(17829686-17829794)
chr7 (44-189)||(9731518-9731665)
chr7 (44-132)||(16297725-16297815)
chr7 (17-108)||(1848091-1848185)
chr7 (187-232)||(9864388-9864433)
chr7 (187-231)||(15869588-15869632)
chr7 (189-232)||(2563810-2563853)
chr7 (189-232)||(4986547-4986590)
chr7 (189-232)||(4990645-4990688)
chr7 (26-182)||(14195846-14196004)
chr7 (187-230)||(19153292-19153335)
chr7 (187-230)||(20752691-20752734)
chr7 (187-225)||(8054120-8054158)
chr7 (33-189)||(16365766-16365924)
chr7 (187-229)||(23100014-23100056)
chr7 (187-232)||(1584537-1584581)
chr7 (41-97)||(6006091-6006148)
chr7 (187-228)||(10937598-10937639)
chr7 (68-189)||(11221082-11221202)
chr7 (192-232)||(2350814-2350854)
chr7 (187-231)||(10584548-10584592)
chr7 (26-163)||(15869682-15869820)
chr7 (187-230)||(1814109-1814152)
chr7 (189-228)||(5047450-5047489)
chr7 (187-230)||(9574401-9574444)
chr7 (189-228)||(23093306-23093345)
chr7 (190-232)||(5797503-5797545)
chr7 (189-231)||(7397189-7397231)
chr7 (187-225)||(8054551-8054589)
chr7 (27-107)||(11803211-11803293)
chr7 (190-232)||(16365697-16365739)
chr7 (46-106)||(140260-140321)
chr7 (187-232)||(1587673-1587718)
chr7 (44-124)||(3329548-3329632)
chr7 (187-232)||(5530013-5530058)
chr7 (187-224)||(9720964-9721001)
chr7 (187-232)||(9731689-9731734)
chr7 (187-232)||(12329674-12329719)
chr7 (189-230)||(14196036-14196077)
chr7 (187-232)||(31492922-31492967)
chr7 (33-136)||(31493042-31493144)
chr7 (187-231)||(11221226-11221270)
chr7 (188-232)||(14755193-14755237)
chr7 (27-111)||(16058907-16058994)
chr7 (188-228)||(18449238-18449278)
chr7 (192-228)||(26134814-26134850)
[»] scaffold0024 (2 HSPs)
scaffold0024 (15-166)||(39669-39821)
scaffold0024 (187-232)||(39576-39621)
[»] scaffold0005 (2 HSPs)
scaffold0005 (26-162)||(168172-168310)
scaffold0005 (187-230)||(168360-168403)
[»] scaffold0102 (1 HSPs)
scaffold0102 (16-189)||(35598-35773)
[»] scaffold0008 (2 HSPs)
scaffold0008 (69-163)||(54948-55042)
scaffold0008 (187-232)||(54852-54897)
[»] scaffold0638 (1 HSPs)
scaffold0638 (33-189)||(702-861)
[»] scaffold0048 (1 HSPs)
scaffold0048 (187-229)||(78589-78631)
[»] scaffold0043 (2 HSPs)
scaffold0043 (36-132)||(89737-89835)
scaffold0043 (189-229)||(89917-89957)
[»] scaffold0838 (1 HSPs)
scaffold0838 (26-173)||(2447-2593)
[»] scaffold0832 (1 HSPs)
scaffold0832 (26-173)||(2478-2624)
[»] scaffold0155 (1 HSPs)
scaffold0155 (26-188)||(35867-36032)
[»] scaffold0063 (1 HSPs)
scaffold0063 (187-232)||(51115-51160)
[»] scaffold0957 (1 HSPs)
scaffold0957 (189-232)||(3145-3188)
[»] scaffold0671 (1 HSPs)
scaffold0671 (27-108)||(572-655)
[»] scaffold0136 (1 HSPs)
scaffold0136 (190-232)||(15530-15572)
[»] scaffold0056 (1 HSPs)
scaffold0056 (28-108)||(21406-21488)
[»] scaffold0035 (1 HSPs)
scaffold0035 (188-226)||(69911-69949)
[»] scaffold0042 (1 HSPs)
scaffold0042 (189-222)||(29909-29942)
[»] scaffold0016 (1 HSPs)
scaffold0016 (187-228)||(12105-12146)
[»] scaffold0002 (1 HSPs)
scaffold0002 (36-142)||(114596-114704)
[»] scaffold0001 (2 HSPs)
scaffold0001 (187-232)||(69074-69118)
scaffold0001 (187-231)||(81480-81524)


Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 24662040 - 24662258
Alignment:
Q  15 aaaatatatatgggggaatcgaagagtcttaaccgctacttacttttctgcaacaaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcg 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24662040 aaaatatatatgggggaatcgaagagtcttaaccgctacttactttactgcaacaaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcg 24662139  T
Q  115 ctaacccttaactcttttattttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaatcactttattacttggtaaacgatctg 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||    
T  24662140 ctaacccttaactcttttattttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaacaacaatcactttattacttgataaacgatttg 24662239  T
Q  215 gtacacttgcctaatccgt 233  Q
    |||||||| ||||||||||    
T  24662240 gtacacttacctaatccgt 24662258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 26 - 189
Target Start/End: Original strand, 18208124 - 18208287
Alignment:
Q  26 gggggaatcgaagagtcttaaccgctacttacttttctgcaacaaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaa 125  Q
    |||||| |||||||||  |||| |||||||||||||||||||| ||||| ||||||||||||  | ||||||  ||||||||| || | | |||||||||    
T  18208124 gggggattcgaagagttgtaactgctacttacttttctgcaaccaaacaggtaacttgctctactgcaaacagataaaaattgcaacctccaacccttaa 18208223  T
Q  126 ctcttttattttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    ||||||||||||||||| | |||  |||||||||||| |||||||||| | ||||| |||||||    
T  18208224 ctcttttattttatatcatcaaaacaaaataagtaacatgaattgtttggacgaaaggacaatc 18208287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 54 - 189
Target Start/End: Complemental strand, 18937945 - 18937808
Alignment:
Q  54 ttacttttctgcaac--aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgct-aacccttaactcttttattttatatcgttaaact 150  Q
    |||| ||||||||||  |||||| ||||||||||||||| ||||||  |||||||||||||| || ||||||||||||||| |||||||||| ||||  |    
T  18937945 ttacatttctgcaaccaaaaacatgtaacttgctctgttgcaaacagataaaaattgaaatctctcaacccttaactcttt-attttatatcattaactt 18937847  T
Q  151 aaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    ||||||||||||||||||||||| | |||||| ||||||    
T  18937846 aaaataagtaacgtgaattgtttggacgaaacaacaatc 18937808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 189
Target Start/End: Complemental strand, 22755704 - 22755582
Alignment:
Q  68 caaaacaagtaacttgctctgtttcaaacaactaaaaattg-aaatcgctaacccttaactcttttattttatatcgttaaactaaaataagtaacgtga 166  Q
    |||||| |||||||||||||||| ||||||  ||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||| ||| |  |    
T  22755704 caaaactagtaacttgctctgttgcaaacagataaaaattgtaaatctctaacccttaactcttttattttatatcgtaaaactaaaataaataatgcca 22755605  T
Q  167 attgtttaggcgaaacgacaatc 189  Q
    ||||||| |  ||||||||||||    
T  22755604 attgtttggaagaaacgacaatc 22755582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 189
Target Start/End: Complemental strand, 34487832 - 34487698
Alignment:
Q  56 acttttctgcaacaaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttatt-ttatatcgttaaactaaaa 154  Q
    ||||||||||||| ||||| |||| ||||||||||  |||||  ||||||||| |||| |||||||||| || ||||||| ||||||||| |||  ||||    
T  34487832 acttttctgcaaccaaacatgtaaattgctctgttgaaaacagataaaaattgcaatctctaacccttatcttttttattattatatcgtcaaaacaaaa 34487733  T
Q  155 taagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    ||||||||| ||||||||||| |||||||||||||    
T  34487732 taagtaacgcgaattgtttagacgaaacgacaatc 34487698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 159
Target Start/End: Original strand, 19283730 - 19283863
Alignment:
Q  26 gggggaatcgaagagtcttaaccgctacttacttttctgcaacaaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaa 125  Q
    |||||| | ||| ||||||||||||| |||| |||||| |||| ||||| ||||||| |||| || |||| |  | ||||||| |||| |||||||||||    
T  19283730 gggggatttgaaaagtcttaaccgctgcttaattttctacaaccaaacaggtaactttctctattgcaaatagattaaaattgtaatctctaacccttaa 19283829  T
Q  126 ctcttttattttatatcgttaaactaaaataagt 159  Q
    |||||||| |||||||||| ||  ||||||||||    
T  19283830 ctcttttactttatatcgtcaacttaaaataagt 19283863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 24266821 - 24266977
Alignment:
Q  15 aaaatatatatgggggaatcgaagagtcttaaccgctacttacttttctgcaacaaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcg 114  Q
    |||||| ||| || ||| |||||||||| |||||||| |||||||| ||| ||| ||||| ||  |||||| |||| ||||||  ||||||||| |||      
T  24266821 aaaataaatagggaggattcgaagagtcctaaccgctgcttacttt-ctgtaaccaaacaggt--cttgctttgttacaaacagataaaaattgcaatat 24266917  T
Q  115 ctaacccttaactcttttatt-ttatatcgttaaactaaaataagtaacgtgaattgttt 173  Q
    ||||||||||||||||||||| ||||||||| |||  ||||||||||||  |||||||||    
T  24266918 ctaacccttaactcttttattattatatcgtcaaaacaaaataagtaacacgaattgttt 24266977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 24343452 - 24343608
Alignment:
Q  15 aaaatatatatgggggaatcgaagagtcttaaccgctacttacttttctgcaacaaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcg 114  Q
    |||||| ||| || ||| |||||||||| |||||||| |||||||| ||| ||| ||||| ||  |||||| |||| ||||||  ||||||||| |||      
T  24343452 aaaataaatagggaggattcgaagagtcctaaccgctgcttacttt-ctgtaaccaaacaggt--cttgctttgttacaaacagataaaaattgcaatat 24343548  T
Q  115 ctaacccttaactcttttatt-ttatatcgttaaactaaaataagtaacgtgaattgttt 173  Q
    ||||||||||||||||||||| ||||||||| |||  ||||||||||||  |||||||||    
T  24343549 ctaacccttaactcttttattattatatcgtcaaaacaaaataagtaacacgaattgttt 24343608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 15469973 - 15469928
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  15469973 atcactttattacttggtaaacgatttggtacacttgcctaatccg 15469928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 136
Target Start/End: Complemental strand, 36175340 - 36175247
Alignment:
Q  44 taaccgctacttacttttctgcaac-aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttattt 136  Q
    |||||||| ||||||||||| |||| |||||| |||||||||| ||||  |||||  ||||||||| |||| |||||||| |||||||||||||    
T  36175340 taaccgcttcttacttttctacaaccaaaacaggtaacttgctttgttgaaaacagataaaaattgcaatctctaaccctcaactcttttattt 36175247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 15690975 - 15690889
Alignment:
Q  53 cttacttttctgcaa-caaaacaagtaacttgctctgtttcaaacaactaaaaattg-aaatcgctaaccc-ttaactcttttattt 136  Q
    ||||||||||||||| ||||||| |||| |||||||||| | ||||| ||||||||| ||||| ||||||| |||||||||||||||    
T  15690975 cttacttttctgcaaccaaaacaggtaatttgctctgttacgaacaaataaaaattgcaaatctctaaccctttaactcttttattt 15690889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 189
Target Start/End: Complemental strand, 26121070 - 26120925
Alignment:
Q  44 taaccgctacttacttttctgcaacaaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttattttatatcg 143  Q
    ||||| || ||||| |||||||||||||||| ||| ||| || || | ||||||  |||||||| ||||  |||||||| |||||||||||||||| |      
T  26121070 taaccactgcttacatttctgcaacaaaacaggtatctttctatgctgcaaacagataaaaattaaaatatctaaccctcaactcttttattttatttta 26120971  T
Q  144 ttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    ||   | ||||||||||| |  |||||||| | |||||||||||||    
T  26120970 ttgttcaaaaataagtaatgctaattgtttggacgaaacgacaatc 26120925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 24267018 - 24267058
Alignment:
Q  189 cactttattacttggtaaacgatctggtacacttgcctaat 229  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  24267018 cactttattacttggtaaacgatttggtacacttgcctaat 24267058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 24343649 - 24343689
Alignment:
Q  189 cactttattacttggtaaacgatctggtacacttgcctaat 229  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  24343649 cactttattacttggtaaacgatttggtacacttgcctaat 24343689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 18208312 - 18208355
Alignment:
Q  189 cactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||    
T  18208312 cactttattactttgtaaacgatttggtacacttgcctaatccg 18208355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 25550566 - 25550609
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatc 230  Q
    ||||||||||||||||||||||||| || |||||||||||||||    
T  25550566 atcactttattacttggtaaacgatttgatacacttgcctaatc 25550609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 17432101 - 17432035
Alignment:
Q  33 tcgaagagtcttaaccgctacttacttttctgcaa-caaaacaagt-aacttgctctgtttcaaaca 97  Q
    ||||||| || |||||||| ||||||||||||||| |||||||||| ||||||||||||| ||||||    
T  17432101 tcgaagaatcctaaccgctgcttacttttctgcaaccaaaacaagtaaacttgctctgttgcaaaca 17432035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 20419993 - 20419951
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaat 229  Q
    ||||||||||||||||||||||||| |||||||||| ||||||    
T  20419993 atcactttattacttggtaaacgatttggtacacttacctaat 20419951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 24260723 - 24260633
Alignment:
Q  44 taaccgctacttacttttctgcaac-aaaacaagtaacttgctctgtttcaaacaactaaaaattg-aaatcgctaacccttaactctttt 132  Q
    |||||||| || || |||||||||| |||| | ||||||||||||||| ||||||  ||||||||| ||||| |||||||| |||||||||    
T  24260723 taaccgctcctaacatttctgcaaccaaaataggtaacttgctctgttgcaaacagataaaaattgcaaatctctaaccctcaactctttt 24260633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 18937785 - 18937740
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||||||||||  |||||||| ||||||||||||||||||||    
T  18937785 atcactttattacttaataaacgatttggtacacttgcctaatccg 18937740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 19086241 - 19086286
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||||||| ||||||||||  ||||||||    
T  19086241 atcactttattacttggtaaacgatttggtacacttatctaatccg 19086286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 15544083 - 15544047
Alignment:
Q  192 tttattacttggtaaacgatctggtacacttgcctaa 228  Q
    |||||||||||||||||||| ||||||||||||||||    
T  15544083 tttattacttggtaaacgatttggtacacttgcctaa 15544047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 26121390 - 26121430
Alignment:
Q  192 tttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||| |||||||| ||||||||||||||||||||    
T  26121390 tttattacttgctaaacgatttggtacacttgcctaatccg 26121430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 36175174 - 36175126
Alignment:
Q  184 acaatcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||| ||||||||||||||||||||||| |||||||||||  |||||||    
T  36175174 acaaacactttattacttggtaaacgatttggtacacttgtttaatccg 36175126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 189
Target Start/End: Original strand, 17171479 - 17171591
Alignment:
Q  76 gtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttatt--ttatatcgttaaactaaaataagtaacgtgaattgttt 173  Q
    ||||||||||||||| |||  |  ||||||||| |||| |||||||| ||||||||||||  |||| | |||    |||||||| ||||| |||||| ||    
T  17171479 gtaacttgctctgttgcaactagataaaaattgcaatctctaaccctcaactcttttatttattattttgtt---ttaaaataattaacgcgaattgctt 17171575  T
Q  174 aggcgaaacgacaatc 189  Q
    || |||||||||||||    
T  17171576 agacgaaacgacaatc 17171591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 19004288 - 19004326
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcc 225  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  19004288 atcactttattacttggtaaacgatttagtacacttgcc 19004326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 127
Target Start/End: Original strand, 20744545 - 20744647
Alignment:
Q  28 gggaatcgaagagtcttaaccgctacttacttttctgcaa-caaaacaagt-aacttgctctgtttcaaacaactaaaaattg-aaatcgctaaccctta 124  Q
    |||| ||||||| || |||||||| ||||||||||| ||| ||||||| || |||||||| |||| ||||||  ||||||||| || || ||||||||||    
T  20744545 gggattcgaagaatcctaaccgctgcttacttttctacaaccaaaacaggtaaacttgctatgttgcaaacagataaaaattgcaactctctaaccctta 20744644  T
Q  125 act 127  Q
    |||    
T  20744645 act 20744647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 20744873 - 20744911
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcc 225  Q
    ||||||||||||||||||||| ||| |||||||||||||    
T  20744873 atcactttattacttggtaaatgatttggtacacttgcc 20744911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 24140479 - 24140442
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcc 225  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  24140479 atcactttattacttggtaaacgat-tggtacacttgcc 24140442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 17171615 - 17171660
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||||||||||| |||| ||| |||||||||| |||||||||    
T  17171615 atcactttattacttgataaaagatttggtacacttacctaatccg 17171660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 17769461 - 17769494
Alignment:
Q  191 ctttattacttggtaaacgatctggtacacttgc 224  Q
    ||||||||||||||||||||| ||||||||||||    
T  17769461 ctttattacttggtaaacgatttggtacacttgc 17769494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 19051586 - 19051541
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||| ||||||||| ||||||||||  ||||||||    
T  19051586 atcactttattactttgtaaacgatttggtacacttttctaatccg 19051541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 23380319 - 23380360
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaa 228  Q
    |||| ||||||||||||||||| || ||||||||||||||||    
T  23380319 atcagtttattacttggtaaacaatttggtacacttgcctaa 23380360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 24265362 - 24265447
Alignment:
Q  39 agtcttaaccgctacttacttttctgcaacaaaacaa-gtaacttgctctgtttcaaacaactaaaaattgaaatcgctaaccctt 123  Q
    |||| |||||||| |||||||||||||||| ||| || |||||||||| | || ||||||  ||||||||| |||  |||||||||    
T  24265362 agtcctaaccgctgcttacttttctgcaactaaataaggtaacttgctttattgcaaacagataaaaattgcaatatctaaccctt 24265447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 24341993 - 24342078
Alignment:
Q  39 agtcttaaccgctacttacttttctgcaacaaaacaa-gtaacttgctctgtttcaaacaactaaaaattgaaatcgctaaccctt 123  Q
    |||| |||||||| |||||||||||||||| ||| || |||||||||| | || ||||||  ||||||||| |||  |||||||||    
T  24341993 agtcctaaccgctgcttacttttctgcaactaaataaggtaacttgctttattgcaaacagataaaaattgcaatatctaaccctt 24342078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 189
Target Start/End: Original strand, 24852173 - 24852210
Alignment:
Q  152 aaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  24852173 aaataagtaacgtgaattgtttagacgaaacaacaatc 24852210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 26110528 - 26110568
Alignment:
Q  192 tttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||| ||||||||  |||||||||||||||||||    
T  26110528 tttattacttgataaacgattcggtacacttgcctaatccg 26110568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 173
Target Start/End: Complemental strand, 17156020 - 17155869
Alignment:
Q  22 atatgggggaatcgaagagtcttaaccgctacttacttttctgcaacaaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaaccc 121  Q
    |||| ||||| || || |||| ||| ||||||||||||||||||||| ||| | ||||||||||||||| ||||||  ||||||||| |||  |||||||    
T  17156020 atataggggattcaaatagtcctaatcgctacttacttttctgcaaccaaataggtaacttgctctgttgcaaacagataaaaattgcaatttctaaccc 17155921  T
Q  122 ttaactcttttattttatatcgttaaactaaaataagtaacgtgaattgttt 173  Q
     |||||||||| ||||||||||||||||||||||||||||| || |||||||    
T  17155920 gtaactctttttttttatatcgttaaactaaaataagtaacatggattgttt 17155869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 44 - 173
Target Start/End: Original strand, 21303246 - 21303376
Alignment:
Q  44 taaccgctacttacttttctgcaac-aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttattttatatc 142  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||| ||||||  ||||||||| |||| ||||||||| |||||||||||||||||     
T  21303246 taaccgctgcttacttttctgcaaccaaaacaagtaacttgctctgttgcaaacagataaaaattgcaatctctaaccctttactcttttattttatata 21303345  T
Q  143 gttaaactaaaataagtaacgtgaattgttt 173  Q
    || ||  ||||||||||||||  ||||||||    
T  21303346 gtcaacttaaaataagtaacggaaattgttt 21303376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 34 - 188
Target Start/End: Complemental strand, 21325558 - 21325402
Alignment:
Q  34 cgaagagtcttaaccgctacttacttttctgcaacaaaacaag-taacttgctctgtttcaaacaactaaaaattgaaatcgctaaccctt-aactcttt 131  Q
    |||||| || ||||||||||||||||||||||||| |||  || |||||||||||||| |||| |  ||||||||| |||| ||||||||| ||||||||    
T  21325558 cgaagaatcataaccgctacttacttttctgcaaccaaattaggtaacttgctctgttgcaaatagataaaaattgcaatctctaacccttcaactcttt 21325459  T
Q  132 tattttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaat 188  Q
    ||||||||||||||||  |||||||||||||   |||||||| | ||||||||||||    
T  21325458 tattttatatcgttaacttaaaataagtaacacaaattgtttggacgaaacgacaat 21325402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 39 - 171
Target Start/End: Original strand, 2723722 - 2723855
Alignment:
Q  39 agtcttaaccgctacttacttttctgcaacaaaacaagtaacttgctctgtttcaaacaactaaaaatt-gaaatcgctaacccttaactcttttatttt 137  Q
    ||||||||||||| ||||||||| |||||| ||||| |||||||||| |||| ||||||  |||||||| | |||  |||||||||||||| ||||||||    
T  2723722 agtcttaaccgctgcttacttttttgcaaccaaacaggtaacttgctttgttgcaaacagataaaaatttgcaatatctaacccttaactcatttatttt 2723821  T
Q  138 atatcgttaaactaaaataagtaacgtgaattgt 171  Q
    ||||| | ||||||||||||||||| ||||||||    
T  2723822 atatcatcaaactaaaataagtaacatgaattgt 2723855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 173
Target Start/End: Original strand, 16245621 - 16245751
Alignment:
Q  44 taaccgctacttacttttctgcaac--aaaacaagtaacttgctctgtttcaaacaactaaaaattg-aaatcgctaacccttaactcttttattttata 140  Q
    |||||||| ||||||||||||||||  |||||| ||||||||||||||| |||| |  ||||||||| ||||| ||||||||||||||||||||||  ||    
T  16245621 taaccgctgcttacttttctgcaaccaaaaacaggtaacttgctctgttgcaaatagataaaaattgcaaatctctaacccttaactcttttattt--ta 16245718  T
Q  141 tcgttaaactaaaataagtaacgtgaattgttt 173  Q
    | || |||||||||||||||||| |||||||||    
T  16245719 ttgtcaaactaaaataagtaacgagaattgttt 16245751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 41508592 - 41508477
Alignment:
Q  26 gggggaatcgaagagtcttaaccgctacttacttttctgcaac-aaaacaagtaacttgctctgtttcaaacaactaaaaattg-aaatcgctaaccctt 123  Q
    |||||| || |||| |||||||||||  ||||||||||||||| |||||| |||||||||| |||| ||||||  || |||||| ||||| |||||||||    
T  41508592 gggggattcaaagaatcttaaccgctggttacttttctgcaaccaaaacatgtaacttgctttgttgcaaacagatacaaattgcaaatctctaaccctt 41508493  T
Q  124 aactcttttattttat 139  Q
    ||||||||||||||||    
T  41508492 aactcttttattttat 41508477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 189
Target Start/End: Original strand, 12805766 - 12805928
Alignment:
Q  28 gggaatcgaagagtcttaaccgctacttacttttctgcaacaaaa-caagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaac 126  Q
    |||| ||||||| || ||||| || |||||||||||||||| ||| || |||| || ||||||| ||||||  ||||||||| |||| ||||||||| |     
T  12805766 gggattcgaagaatcctaacccctgcttacttttctgcaaccaaatcaggtaattttctctgttgcaaacagataaaaattgcaatctctaaccctttaa 12805865  T
Q  127 tcttttattttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    |||||||||||||| |||  |  ||||||||||||||  |||||||| |  ||||||||||||    
T  12805866 tcttttattttataacgtcgacttaaaataagtaacgcaaattgtttggatgaaacgacaatc 12805928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 186
Target Start/End: Original strand, 2167491 - 2167652
Alignment:
Q  26 gggggaatcgaagagtcttaaccgctacttacttttctgcaac-aaaacaagtaacttgctctgtttcaaacaactaaaaattg-aaatcgctaaccctt 123  Q
    |||||| ||||||| || ||||| || ||||||||||  |||| |||||| |||||||| | |||| ||||||  ||||||||| ||||| |||||| ||    
T  2167491 gggggattcgaagaatcctaaccacttcttacttttccacaaccaaaacaggtaacttggtatgttgcaaacagataaaaattgcaaatctctaaccatt 2167590  T
Q  124 aactcttttattttatatcgttaaactaaaa-taagtaacgtgaattgtttaggcgaaacgaca 186  Q
     ||||||||||||||||  || ||||||||| ||||||| ||||||||||| | ||||||||||    
T  2167591 tactcttttattttata--gtcaaactaaaaataagtaatgtgaattgtttggacgaaacgaca 2167652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 189
Target Start/End: Original strand, 3116321 - 3116457
Alignment:
Q  54 ttacttttctgcaacaaaa--caagtaacttgctctgtttcaaacaactaaaaattg-aaatcgct-aacccttaactcttttattttatatcgttaaac 149  Q
    ||||||||||||||| |||  || ||| ||||||||||| ||||||  ||||||||| ||||| || |||||||| |||||| |||||||  ||| ||      
T  3116321 ttacttttctgcaaccaaaaccaggtatcttgctctgttgcaaacagataaaaattgcaaatctcttaacccttatctcttt-attttat--cgtcaact 3116417  T
Q  150 taaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  3116418 taaaataagtaacgtgaattgtttggacgaaacgacaatc 3116457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 135
Target Start/End: Original strand, 18736564 - 18736657
Alignment:
Q  44 taaccgctacttacttttctgcaac-aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaa-tcgctaacccttaactcttttatt 135  Q
    |||||||| |||| ||||||||||| |||||| |||||||| || ||| ||||||| |||||||| ||| || |||||||||||||||||||||    
T  18736564 taaccgctgcttatttttctgcaaccaaaacaggtaacttgttcggttgcaaacaaataaaaattaaaaatctctaacccttaactcttttatt 18736657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 21301955 - 21301910
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  21301955 atcactttattacttggtaaacgatttggtacacttgcctaatccg 21301910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 932950 - 932884
Alignment:
Q  44 taaccgctacttacttttctgcaac-aaaacaagtaa-cttgctctgtttcaaacaactaaaaattg 108  Q
    |||||||| |||||||||||||||| ||||||||||| ||||||||||| ||||||| |||||||||    
T  932950 taaccgctgcttacttttctgcaaccaaaacaagtaaacttgctctgttgcaaacaaataaaaattg 932884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 12805952 - 12805997
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||    
T  12805952 atcactttattacttggtaaatgatttggtacacttgcctaatccg 12805997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 41508404 - 41508359
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||    
T  41508404 atcactttattacttgataaacgatttggtacacttgcctaatccg 41508359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 8765330 - 8765247
Alignment:
Q  27 ggggaatcgaagagtcttaaccgctacttacttttctgcaa-caaaacaagt-aacttgctctgtttcaaacaactaaaaattg 108  Q
    ||||| ||||||| ||||||| ||| ||||||||||||||| ||||||| || ||||||||||||| ||||||  |||||||||    
T  8765330 ggggattcgaagaatcttaactgctgcttacttttctgcaaccaaaacaggtaaacttgctctgttgcaaacatataaaaattg 8765247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 10917955 - 10917912
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatc 230  Q
    |||||||||||| |||||||||||| ||||||||||||||||||    
T  10917955 atcactttattatttggtaaacgatttggtacacttgcctaatc 10917912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 3116480 - 3116522
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaat 229  Q
    |||||||||||||||||||||| || |||||||||||||||||    
T  3116480 atcactttattacttggtaaacaatttggtacacttgcctaat 3116522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 10744939 - 10744897
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaat 229  Q
    ||||||||||||||||||||||||| ||||| |||||||||||    
T  10744939 atcactttattacttggtaaacgatttggtaaacttgcctaat 10744897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 6289940 - 6289895
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||||||| || |||| ||||||||||||    
T  6289940 atcactttattacttggtaaacgatttgatacatttgcctaatccg 6289895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 10745099 - 10744963
Alignment:
Q  53 cttacttttctgcaac-aaaacaagtaacttgctctgtttcaaacaactaaaaattg-aaatcgctaacccttaactcttttatt-ttatatcgttaaac 149  Q
    ||||| |||||||||| |||||| ||||||||||||||| |||| |  ||||||||| ||||| || ||||| |||||||||||| | || | |||        
T  10745099 cttacatttctgcaaccaaaacaggtaacttgctctgttgcaaatagataaaaattgcaaatctcttaccctcaactcttttattataattttgtt---t 10745003  T
Q  150 taaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    |||||||| ||| |||| |||||||| |||||||||||||    
T  10745002 taaaataattaatgtgatttgtttagacgaaacgacaatc 10744963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 16245791 - 16245836
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||||||  ||||||||||| ||||||||    
T  16245791 atcactttattacttggtaaacgagttggtacacttgtctaatccg 16245836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 8319188 - 8319116
Alignment:
Q  101 aaaaattgaaatcgctaacccttaactcttttattttatatcgttaaactaaaataagtaacgtgaattgttt 173  Q
    |||||||| |||| ||||| |||| ||||| ||||||||||| | ||  ||||||||||||| ||||||||||    
T  8319188 aaaaattgcaatctctaactcttatctcttgtattttatatcatcaacttaaaataagtaacatgaattgttt 8319116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 12754797 - 12754884
Alignment:
Q  27 ggggaatcgaagagtcttaaccgctacttacttttctgcaa-caaaacaag--taacttgctctgtttcaaacaactaaaaattgaaa 111  Q
    ||||| ||||||| || |||||||| ||||||||||||||| |||||| ||   |||| |||||||| ||||||| ||||||||||||    
T  12754797 ggggattcgaagaatcctaaccgctgcttacttttctgcaaccaaaaccaggtaaactagctctgttgcaaacaaataaaaattgaaa 12754884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 8770232 - 8770149
Alignment:
Q  27 ggggaatcgaagagtcttaaccgctacttacttttctgcaa-caaaacaagt-aacttgctctgtttcaaacaactaaaaattg 108  Q
    ||||| ||||||| || |||| ||| ||||||||||||||| ||||||| || ||||||||||||| ||||||  |||||||||    
T  8770232 ggggattcgaagaatcctaactgctgcttacttttctgcaaccaaaacaggtaaacttgctctgttgcaaacatataaaaattg 8770149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 18736736 - 18736775
Alignment:
Q  190 actttattacttggtaaacgatctggtacacttgcctaat 229  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  18736736 actttattacttggtaaacgatttggtacacttgtctaat 18736775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 21325377 - 21325334
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatc 230  Q
    |||| ||||||||||||||||| || ||||||||||||||||||    
T  21325377 atcagtttattacttggtaaacaatttggtacacttgcctaatc 21325334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 232
Target Start/End: Complemental strand, 22245377 - 22245342
Alignment:
Q  197 tacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||| ||||||||||||||||||||    
T  22245377 tacttggtaaacgatttggtacacttgcctaatccg 22245342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 31286078 - 31286121
Alignment:
Q  189 cactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||||    
T  31286078 cactttattacttggtaaatgatttggtacacttgtctaatccg 31286121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 5508373 - 5508331
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaat 229  Q
    ||||||||||||||||| ||| ||| |||||||||||||||||    
T  5508373 atcactttattacttggcaaatgatttggtacacttgcctaat 5508331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 12411189 - 12411143
Alignment:
Q  186 aatcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||||||||||||||||  ||| |||||||||||||| |||||    
T  12411189 aatcactttattacttggtaagtgatttggtacacttgccttatccg 12411143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 17438431 - 17438469
Alignment:
Q  151 aaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  17438431 aaaataagtaacgtgaattgtttggacgaaacgacaatc 17438469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 4650460 - 4650367
Alignment:
Q  17 aatatatatgggggaatcgaagagtcttaaccgctacttacttttctgcaa-caaaacaagt-aacttgctctgtttcaaacaactaaaaattg 108  Q
    |||||| || ||||| ||||||| || |||||| | ||||||||||||||| ||||||| || ||||||||| ||| ||||||  |||||||||    
T  4650460 aatatacataggggattcgaagaatcctaaccgttgcttacttttctgcaaccaaaacaggtaaacttgctccgttgcaaacagataaaaattg 4650367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 12759424 - 12759383
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaa 228  Q
    |||||||||||||||||||||| || ||||||||||| ||||    
T  12759424 atcactttattacttggtaaacaatttggtacacttgtctaa 12759383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 19171896 - 19171941
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||||||||||||||||| || | ||| ||||||||||||||    
T  19171896 atcactttattacttggtaaacaatttagtatacttgcctaatccg 19171941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 21825932 - 21825973
Alignment:
Q  189 cactttattacttggtaaacgatctggtacacttgcctaatc 230  Q
    |||||||||||| |||||||||| |||||||||| |||||||    
T  21825932 cactttattactcggtaaacgatttggtacacttacctaatc 21825973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 7148020 - 7147980
Alignment:
Q  192 tttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||| ||||||||||||||| ||||||| ||||||||||||    
T  7148020 tttagtacttggtaaacgatttggtacatttgcctaatccg 7147980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 8267167 - 8267091
Alignment:
Q  15 aaaatatatatgggggaatcgaagagtcttaaccgctacttacttttctgcaa-caaaacaagtaacttgctctgtt 90  Q
    |||||| ||| |||||| || ||||||| ||||||||||| |||||| ||||| ||||| | |||| ||||||||||    
T  8267167 aaaataaataggggggattcaaagagtcctaaccgctactgacttttatgcaaccaaaataggtaatttgctctgtt 8267091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 18458486 - 18458530
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatcc 231  Q
    |||||||||||||||| ||||| || ||||||||||| |||||||    
T  18458486 atcactttattacttgataaacaatttggtacacttgtctaatcc 18458530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 19909836 - 19909892
Alignment:
Q  16 aaatatatatgggggaatcgaagagtcttaaccgctacttacttttctgcaacaaaa 72  Q
    ||||||| || ||||| || |||| || |||||||| ||||||||||||||||||||    
T  19909836 aaatatacataggggattcaaagaatcctaaccgctgcttacttttctgcaacaaaa 19909892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 21825743 - 21825831
Alignment:
Q  26 gggggaatcgaagagtcttaaccgctacttacttttctgcaa-caaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatc 113  Q
    |||||| || ||||||| ||||   ||||||||||||||||| ||||| | |||||||||| |||| ||||||  ||||||||| ||||    
T  21825743 gggggattcaaagagtcctaactcttacttacttttctgcaaccaaaaaaggtaacttgctatgttacaaacagataaaaattgcaatc 21825831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 22349446 - 22349410
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttg 223  Q
    |||||||||||| |||||||||||| |||||||||||    
T  22349446 atcactttattatttggtaaacgatttggtacacttg 22349410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 49)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 44 - 189
Target Start/End: Complemental strand, 17672209 - 17672063
Alignment:
Q  44 taaccgctacttacttttctgcaacaaaacaag-taacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttattttatatc 142  Q
    |||| ||| |||||||||||||||| |||| || |||||||||||||| ||||||  ||||||||| |||| |||||| |||||||||||||||||||||    
T  17672209 taactgcttcttacttttctgcaaccaaaccaggtaacttgctctgttgcaaacagataaaaattgcaatctctaacctttaactcttttattttatatc 17672110  T
Q  143 gttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    |||||  |||||||||||||| || |||||||| |||||| ||||||    
T  17672109 gttaacttaaaataagtaacgcgagttgtttagacgaaacaacaatc 17672063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 58 - 182
Target Start/End: Complemental strand, 5679397 - 5679273
Alignment:
Q  58 ttttctgcaacaaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttattttatatcgttaaactaaaataa 157  Q
    |||| |||||| ||| | ||||||||||||||| ||||||  ||||||||| |||  |||||||||||||||||||||||||||||||||  ||||||||    
T  5679397 ttttttgcaaccaaataggtaacttgctctgttacaaacagataaaaattgcaatgtctaacccttaactcttttattttatatcgttaacttaaaataa 5679298  T
Q  158 gtaacgtgaattgtttaggcgaaac 182  Q
    |||||| ||||||||| | ||||||    
T  5679297 gtaacgcgaattgtttggacgaaac 5679273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 19092531 - 19092356
Alignment:
Q  15 aaaatatatatgggggaatcgaagagtcttaaccgctacttacttttctgcaac-aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatc 113  Q
    |||||| ||||||||||  | ||||||| ||||||||| ||||||||||| ||| |||||| |||| || |||||||  |||||  ||||||||| ||||    
T  19092531 aaaataaatatgggggatgcaaagagtcctaaccgctatttacttttctgtaaccaaaacaggtaatttactctgttgtaaacagataaaaattgcaatc 19092432  T
Q  114 gctaacccttaactcttttattttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
     ||||| |||| ||||||||||| ||||||| ||  ||||||||| ||||||| |||||| | |||||||||||||    
T  19092431 tctaactcttatctcttttatttaatatcgtcaacttaaaataagcaacgtgagttgtttggacgaaacgacaatc 19092356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 162
Target Start/End: Complemental strand, 14649120 - 14648982
Alignment:
Q  26 gggggaatcgaagagtcttaaccgctacttacttttctgcaac--aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaaccctt 123  Q
    |||||| || ||||||| |||||| |  || ||||||| ||||  |||||||||||||||||||||| ||||||  |||||||||||||| |||||||||    
T  14649120 gggggattcaaagagtcctaaccgttgtttccttttctacaaccaaaaacaagtaacttgctctgttgcaaacagataaaaattgaaatctctaaccctt 14649021  T
Q  124 aactcttttattttatatcgttaaactaaaataagtaac 162  Q
    |  |||||||||||||||||| ||  |||||||||||||    
T  14649020 atgtcttttattttatatcgtcaacttaaaataagtaac 14648982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 12578183 - 12578304
Alignment:
Q  68 caaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttattttatatcgttaaactaaaataagtaacgtgaa 167  Q
    ||||||| ||||||||||||||| ||||||  ||||||||| |||| ||||||||| |||||||||||||||||||| ||  ||||||||| ||||  ||    
T  12578183 caaaacaggtaacttgctctgttgcaaacagataaaaattgtaatctctaaccctttactcttttattttatatcgtcaacttaaaataagaaacgcaaa 12578282  T
Q  168 ttgtttaggcgaaacgacaatc 189  Q
    |||||| | | |||||||||||    
T  12578283 ttgtttggacaaaacgacaatc 12578304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 45 - 163
Target Start/End: Original strand, 17951189 - 17951308
Alignment:
Q  45 aaccgctacttacttttctgcaacaaaa-caagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttattttatatcg 143  Q
    ||||||| ||| |||||||||||| ||| || ||||||||||||||| ||||||  ||||||||| |||| ||||||| | |||||||||||||||||||    
T  17951189 aaccgctgcttgcttttctgcaaccaaatcaggtaacttgctctgttgcaaacagataaaaattgcaatctctaacccgtcactcttttattttatatcg 17951288  T
Q  144 ttaaactaaaataagtaacg 163  Q
    | ||  ||||||||||||||    
T  17951289 tcaacttaaaataagtaacg 17951308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 17955044 - 17955160
Alignment:
Q  48 cgctacttacttttctgcaacaaaa-caagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttattttatatcgtta 146  Q
    |||| ||| |||||||||||| ||| || ||||||||||||||| ||||||  ||||||||| |||| ||||||| | |||||||||||||||||||| |    
T  17955044 cgctgcttgcttttctgcaaccaaatcaggtaacttgctctgttgcaaacagataaaaattgcaatctctaacccatcactcttttattttatatcgtca 17955143  T
Q  147 aactaaaataagtaacg 163  Q
    |  ||||||||||||||    
T  17955144 acttaaaataagtaacg 17955160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 189
Target Start/End: Original strand, 19636483 - 19636624
Alignment:
Q  48 cgctacttacttttctgcaacaaaacaagtaacttgctctgtttcaaacaactaaaaattg-aaatcgctaacccttaactcttttattttatatcgtta 146  Q
    |||| ||||||||||| ||||||||  |||||||||||||| | ||||||  ||||||| |  |||| ||||||||||||||||||||||  |||||| |    
T  19636483 cgctgcttacttttctacaacaaaaatagtaacttgctctgctacaaacatataaaaatagtgaatctctaacccttaactcttttattt--tatcgtca 19636580  T
Q  147 aac-taaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    ||| ||||||||||||| |||||||||| |  ||||||||||||    
T  19636581 aacttaaaataagtaacatgaattgtttggatgaaacgacaatc 19636624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 162
Target Start/End: Original strand, 19929579 - 19929686
Alignment:
Q  57 cttttctgcaac--aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttattttatatcgttaaactaaaa 154  Q
    ||||||||||||  |||||| |||| |||||||||| ||||||  ||||||||||||||  ||||||||| |||||||||||||||| || ||  |||||    
T  19929579 cttttctgcaaccaaaaacatgtaatttgctctgttgcaaacagataaaaattgaaatctttaacccttatctcttttattttatattgtcaacttaaaa 19929678  T
Q  155 taagtaac 162  Q
    ||||||||    
T  19929679 taagtaac 19929686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 11490681 - 11490609
Alignment:
Q  100 taaaaattgaaatcgctaacccttaactcttttattttatatcgttaaactaaaataagtaacgtgaattgttt 173  Q
    ||||||||| |||| ||||| || ||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  11490681 taaaaattgcaatctctaacact-aactcttttattttatatcgtcaaactaaaataagtaacgcgaattgttt 11490609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 9737571 - 9737616
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  9737571 atcactttattacttggtaaacgatttggtacacttgcctaatccg 9737616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 17672039 - 17671994
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  17672039 atcactttattacttggtaaacgatttggtacacttgcctaatccg 17671994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 20829800 - 20829845
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  20829800 atcactttattacttggtaaacgatttggtacacttgcctaatccg 20829845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 22357394 - 22357570
Alignment:
Q  15 aaaatatatatgggggaatcgaagagtcttaaccgctacttacttttctgcaac--aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaat 112  Q
    |||||| ||| |||||| || || |||| ||| || | ||| |||||||||||   ||||||||||||||||| | || ||||||| ||||||||| |||    
T  22357394 aaaataaataggggggattcaaaaagtcctaaacgatgcttccttttctgcaatcaaaaacaagtaacttgctatattgcaaacaaataaaaattgcaat 22357493  T
Q  113 cgctaacccttaactcttttattttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    | ||||| |||| ||||| | ||||||||||| ||  | |||||||||||  ||| ||||||   ||||||||||||    
T  22357494 ctctaactcttatctcttattttttatatcgtcaactttaaataagtaacacgaactgtttaaatgaaacgacaatc 22357570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 13692731 - 13692774
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatc 230  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  13692731 atcactttattacttggtaaacgatttggtacacttgcctaatc 13692774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 14648932 - 14648889
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatc 230  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  14648932 atcactttattacttggtaaacgatttggtacacttgcctaatc 14648889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 22175904 - 22175954
Alignment:
Q  92 caaacaactaaaaattgaaatcgctaacccttaactcttttattttatatc 142  Q
    ||||||| ||||||||| |||| ||||||||||||||||||||||||||||    
T  22175904 caaacaaataaaaattgcaatctctaacccttaactcttttattttatatc 22175954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 189
Target Start/End: Original strand, 25121100 - 25121264
Alignment:
Q  26 gggggaatcgaagagtcttaaccgctacttacttttctgcaa-caaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatc-gctaaccctt 123  Q
    |||||| ||||||| || |||||||| ||||||||||||||| ||||||  ||||||||||||||| ||||||  || |||||| ||||   || | ||     
T  25121100 gggggattcgaagaatcctaaccgctgcttacttttctgcaatcaaaacgggtaacttgctctgttgcaaacagatagaaattgcaatctattatcactc 25121199  T
Q  124 aactcttttattttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    |||||||||| ||||| |  |||||   |||||||||||| ||||||||| | |||||| ||||||    
T  25121200 aactctttta-tttatttttttaaaaccaaataagtaacgcgaattgtttggacgaaaccacaatc 25121264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 5679243 - 5679200
Alignment:
Q  186 aatcactttattacttggtaaacgatctggtacacttgcctaat 229  Q
    |||||||||||||||||||||||||| ||||||||||| |||||    
T  5679243 aatcactttattacttggtaaacgatttggtacacttgtctaat 5679200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 13128936 - 13128978
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaat 229  Q
    |||| |||||||||||||||||||| |||||||||||||||||    
T  13128936 atcattttattacttggtaaacgatttggtacacttgcctaat 13128978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 15164965 - 15164887
Alignment:
Q  52 acttacttttctgcaac-aaaacaagtaa-cttgctctgtttcaaacaactaaaaattg-aaatcgctaacccttaact 127  Q
    ||||||||||||||||| |||||| |||| ||||||||||| ||||||| ||||||||| || || |||||||||||||    
T  15164965 acttacttttctgcaaccaaaacaggtaaacttgctctgttgcaaacaaataaaaattgcaactctctaacccttaact 15164887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 194
Target Start/End: Original strand, 17337008 - 17337178
Alignment:
Q  26 gggggaatcgaagagtcttaaccgctacttacttttctgcaac--aaaacaagtaa-cttgctctgtttcaaacaactaaaaattg-aaatcgctaaccc 121  Q
    |||||| ||||||| || ||| | || ||||||||| ||||||  |||||| |||| |||||||||||  |||||  ||||||||| ||||| | |||||    
T  17337008 gggggattcgaagaatcataatctctgcttacttttatgcaaccaaaaacaggtaaacttgctctgttgtaaacagataaaaattgcaaatctcaaaccc 17337107  T
Q  122 ttaactcttttattttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaatcacttt 194  Q
    || |||||||||||  ||||||| ||   |||||||||||||  |||||||| | ||||| ||||||| ||||    
T  17337108 tttactcttttatt--atatcgtcaactaaaaataagtaacgcaaattgtttggacgaaatgacaatctcttt 17337178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 19882678 - 19882632
Alignment:
Q  186 aatcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||| |||||||| | ||||||||||||||||||    
T  19882678 aatcactttattacttgataaacgattttgtacacttgcctaatccg 19882632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 12318470 - 12318425
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||||||||||||| || ||| ||||||||||||||||||||    
T  12318470 atcactttattacttggttaatgatttggtacacttgcctaatccg 12318425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 13908891 - 13908854
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgc 224  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  13908891 atcactttattacttggtaaacgatttggtacacttgc 13908854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 17709794 - 17709757
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgc 224  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  17709794 atcactttattacttggtaaacgatttggtacacttgc 17709757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 17951358 - 17951403
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||| ||||||||||||||| ||||||||||| ||||||||    
T  17951358 atcactttagtacttggtaaacgatttggtacacttgtctaatccg 17951403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 17955210 - 17955255
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||| ||||||||||||||| ||||||||||| ||||||||    
T  17955210 atcactttagtacttggtaaacgatttggtacacttgtctaatccg 17955255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 19562240 - 19562285
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||| ||| |||||||||||| |||||||    
T  19562240 atcactttattacttggtaaatgatttggtacacttgcttaatccg 19562285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 9052706 - 9052666
Alignment:
Q  192 tttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  9052706 tttattacttggtaaatgatttggtacacttgcctaatccg 9052666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 12578328 - 12578372
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatcc 231  Q
    |||||||||||| |||||||| ||| |||||||||||||||||||    
T  12578328 atcactttattatttggtaaatgatttggtacacttgcctaatcc 12578372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 15047165 - 15047121
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatcc 231  Q
    ||||||||||||||||||||||||| ||| |||||| ||||||||    
T  15047165 atcactttattacttggtaaacgatttggaacactttcctaatcc 15047121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 15107259 - 15107303
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatcc 231  Q
    ||||||||||||||||||||||||| ||| |||||| ||||||||    
T  15107259 atcactttattacttggtaaacgatttggaacactttcctaatcc 15107303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 22176024 - 22176064
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgccta 227  Q
    |||||||||||||||| |||||||| |||||||||||||||    
T  22176024 atcactttattacttgataaacgatttggtacacttgccta 22176064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 40227813 - 40227770
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatcc 231  Q
    |||||||||||||||||||| |||| |||||||||||||||||||    
T  40227813 atcactttattacttggtaa-cgatttggtacacttgcctaatcc 40227770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 17709987 - 17709896
Alignment:
Q  18 atatatatgggggaatcgaagagtcttaaccgctacttacttttctgcaa-caaaacaagt-aacttgctctgtttcaaacaactaaaaatt 107  Q
    ||||| || ||||| ||||||| || |||| ||||||||||||| ||||| ||||||| || ||||||||||||| ||||||  ||||||||    
T  17709987 atatacataggggattcgaagaatcctaacagctacttacttttttgcaaccaaaacaggtaaacttgctctgttgcaaacatataaaaatt 17709896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 19092332 - 19092289
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatc 230  Q
    |||||||||||||||| ||||| || ||||||||||||||||||    
T  19092332 atcactttattacttgataaacaatttggtacacttgcctaatc 19092289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 19900615 - 19900576
Alignment:
Q  189 cactttattacttggtaaacgatctggtacacttgcctaa 228  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  19900615 cactttattacttggtaaacaatttggtacacttgcctaa 19900576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 135
Target Start/End: Original strand, 24639352 - 24639446
Alignment:
Q  44 taaccgctacttacttttctgcaac--aaaacaagtaa-cttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttatt 135  Q
    ||||| || ||||||||||||||||  |||||| |||| ||||||||||| ||||||| ||||| |  ||||| ||||||||| ||| |||||||    
T  24639352 taaccactgcttacttttctgcaaccgaaaacaggtaaacttgctctgttgcaaacaaataaaattacaaatctctaaccctttactattttatt 24639446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 25121289 - 25121332
Alignment:
Q  189 cactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||||| ||| |||||| |||||||||    
T  25121289 cactttattacttggtaaacgatttggaacactttcctaatccg 25121332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 11490569 - 11490524
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||||||||||| ||||| || |||||||||| |||||||||    
T  11490569 atcactttattacttgataaacaatttggtacactttcctaatccg 11490524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 13587268 - 13587231
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgc 224  Q
    |||||||||||| |||||||||||| ||||||||||||    
T  13587268 atcactttattatttggtaaacgatttggtacacttgc 13587231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 20315037 - 20315000
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgc 224  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  20315037 atcaatttattacttggtaaacgatttggtacacttgc 20315000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 21323937 - 21323982
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||| |||||| |||||||||||| | ||||||||||||||||||    
T  21323937 atcacattattatttggtaaacgatttagtacacttgcctaatccg 21323982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 10107043 - 10107007
Alignment:
Q  192 tttattacttggtaaacgatctggtacacttgcctaa 228  Q
    |||||||||||||||||||| || |||||||||||||    
T  10107043 tttattacttggtaaacgatttgctacacttgcctaa 10107007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 11700631 - 11700675
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatcc 231  Q
    |||| ||||||||||||||||| || ||||||||||| |||||||    
T  11700631 atcattttattacttggtaaacaatttggtacacttgtctaatcc 11700675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 19492766 - 19492798
Alignment:
Q  191 ctttattacttggtaaacgatctggtacacttg 223  Q
    ||||||||||||||||||||| |||||||||||    
T  19492766 ctttattacttggtaaacgatttggtacacttg 19492798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 19929737 - 19929777
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgccta 227  Q
    |||||||| |||||||||||| ||| |||||||||||||||    
T  19929737 atcactttgttacttggtaaatgatttggtacacttgccta 19929777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 26115779 - 26115895
Alignment:
Q  26 gggggaatcgaagagtcttaaccgctacttacttttctgcaac-aaaacaagtaacttgctctgtttcaaacaactaaaaattg-aaatcgct-aaccct 122  Q
    |||||| | ||||| || |||||||| || || ||| |||||| |||||| ||||||| ||||||| ||||||  ||||||||| ||||| || ||||||    
T  26115779 gggggatttgaagaatcctaaccgctgctaacatttatgcaaccaaaacaggtaacttactctgttgcaaacagataaaaattgcaaatctcttaaccct 26115878  T
Q  123 taactcttttattttat 139  Q
     ||||||||||| ||||    
T  26115879 aaactcttttatattat 26115895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 36 - 189
Target Start/End: Complemental strand, 32085678 - 32085524
Alignment:
Q  36 aagagtcttaaccgctacttacttttctgcaacaaaacaag-taacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttat 134  Q
    ||||||| |||||||| |||||||||||||||| |||| || |||||||||||||| ||||||  ||||||||| |||| ||||| ||||||||||||||    
T  32085678 aagagtcctaaccgctgcttacttttctgcaaccaaaccaggtaacttgctctgttgcaaacagataaaaattgcaatctctaactcttaactcttttat 32085579  T
Q  135 tttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    |||||||||| ||  |||||||||||||  ||  ||||||| |||||||||||||    
T  32085578 tttatatcgtcaacttaaaataagtaacacgagctgtttagacgaaacgacaatc 32085524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 189
Target Start/End: Original strand, 20174512 - 20174673
Alignment:
Q  28 gggaatcgaagagtcttaaccgctacttacttttctgcaacaaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaact 127  Q
    |||| |||||||||  |||||||| |||||||||||   || ||||| |||| |||||||||| ||||||  ||||||||  |||| |||||||||||||    
T  20174512 gggattcgaagagtgctaaccgctgcttacttttcttttaccaaacaggtaatttgctctgttgcaaacagataaaaattccaatctctaacccttaact 20174611  T
Q  128 cttttattttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
     |||||||||||||| | ||  ||||||||||||| |||||||||| | |||||||||||||    
T  20174612 attttattttatatcatcaacttaaaataagtaacatgaattgtttggacgaaacgacaatc 20174673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 25885324 - 25885497
Alignment:
Q  15 aaaatatatatgggggaatcgaagagtcttaaccgctacttacttttctgcaacaaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcg 114  Q
    |||||| ||| |||| | || ||||||| ||||| || ||||||||||| |||| || || ||||| | |||| || | ||||  |||||||||||||      
T  25885324 aaaatagatagggggaattcaaagagtcctaaccactgcttacttttctacaaccaaccaggtaaccttctctattccgaacagataaaaattgaaatat 25885423  T
Q  115 ctaacccttaactcttttattttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaat 188  Q
    ||||||||||||||||||||||||||||||   | |||||||||||||   |||||||| | ||||||||||||    
T  25885424 ctaacccttaactcttttattttatatcgtcggaataaaataagtaacacaaattgtttggacgaaacgacaat 25885497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 189
Target Start/End: Complemental strand, 25618762 - 25618617
Alignment:
Q  45 aaccgctacttacttttctgcaac-aaaacaagtaa-cttgctctgtttcaaacaactaaaaattg-aaatcgctaacccttaactcttttattttatat 141  Q
    ||||||| |||||||||||||||| |||||| |||| ||| ||||||| ||||||  ||||||||| ||||| |||||  || |||||||||||  ||||    
T  25618762 aaccgctgcttacttttctgcaaccaaaacaggtaaactttctctgttgcaaacagataaaaattgcaaatctctaacttttcactcttttatt--atat 25618665  T
Q  142 cgttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    ||| ||   ||||||||| ||| ||||||||||| |||||||||||||    
T  25618664 cgtcaactaaaaataagttacgcgaattgtttagacgaaacgacaatc 25618617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 189
Target Start/End: Original strand, 23011637 - 23011801
Alignment:
Q  26 gggggaatcgaagagtcttaaccgctacttacttttctgcaacaaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaa 125  Q
    |||||| | |||||||||||||||||  |||||||||| |||| ||| | |||||||| | ||||  ||| |  ||||||||  |||  |||||||||||    
T  23011637 gggggatttgaagagtcttaaccgctggttacttttctacaaccaaataggtaacttgatatgttggaaatagataaaaatttcaatatctaacccttaa 23011736  T
Q  126 ctcttttatt-ttatatcgt-taaactaaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    |||||||||| ||||||||| || ||| |||||| |||||  |||||||||| | |||||||||||    
T  23011737 ctcttttattattatatcgtctagact-aaataaataacgcaaattgtttagacaaaacgacaatc 23011801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 29719293 - 29719338
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  29719293 atcactttattacttggtaaacgatttggtacacttgcctaatccg 29719338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 189
Target Start/End: Original strand, 28606120 - 28606216
Alignment:
Q  93 aaacaactaaaaattgaaatcgctaacccttaactcttttattttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    |||||| ||||||||| |||| |||||||||  |||||||||| |||||||| ||  ||||||||||||||  |  ||||||| |||||||||||||    
T  28606120 aaacaaataaaaattgcaatctctaacccttgtctcttttattatatatcgtcaacttaaaataagtaacgccagctgtttagacgaaacgacaatc 28606216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 163
Target Start/End: Complemental strand, 29027690 - 29027583
Alignment:
Q  57 cttttctgcaacaaaa-caagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttattttatatcgttaaactaaaat 155  Q
    |||||||||||| ||| || || ||||||||| || ||||||  ||||||||| |||| |||||||||| ||||||||||| ||||||  ||  ||||||    
T  29027690 cttttctgcaaccaaatcaggtcacttgctctcttgcaaacagataaaaattgcaatctctaacccttatctcttttatttaatatcggcaacttaaaat 29027591  T
Q  156 aagtaacg 163  Q
    ||||||||    
T  29027590 aagtaacg 29027583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 169
Target Start/End: Original strand, 11382654 - 11382771
Alignment:
Q  54 ttacttttctgcaacaaaa--caagtaacttgctctgtttcaaacaactaaaaattg-aaatcgctaacccttaactcttttattttatatcgttaaact 150  Q
    |||||||||| ||||||||  |||||||||||||||||| ||||||  ||||| ||| ||||| |||||  ||||||||||||| |  |||||| |||||    
T  11382654 ttacttttctacaacaaaaaacaagtaacttgctctgttgcaaacagataaaatttgcaaatctctaacttttaactcttttatct--tatcgtcaaact 11382751  T
Q  151 -aaaataagtaacgtgaatt 169  Q
     ||||||||||||| |||||    
T  11382752 aaaaataagtaacgcgaatt 11382771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 25888282 - 25888327
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||||||||||||||||| || ||||||||||||||||||||    
T  25888282 atcactttattacttggtaaacaatttggtacacttgcctaatccg 25888327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 15339274 - 15339230
Alignment:
Q  188 tcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  15339274 tcactttattacttggtaaatgatttggtacacttgcctaatccg 15339230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 20174697 - 20174740
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatc 230  Q
    ||||||||||||||||||||||||| |||||||||| |||||||    
T  20174697 atcactttattacttggtaaacgatttggtacactttcctaatc 20174740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 45553167 - 45553124
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatc 230  Q
    |||||||||||||||| |||||||| ||||||||||||||||||    
T  45553167 atcactttattacttgataaacgatttggtacacttgcctaatc 45553124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 8447114 - 8447152
Alignment:
Q  190 actttattacttggtaaacgatctggtacacttgcctaa 228  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  8447114 actttattacttggtaaacgatttggtacacttgcctaa 8447152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 17743538 - 17743576
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcc 225  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  17743538 atcactttattacttggtaaacgatttggtacacttgcc 17743576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 27909181 - 27909219
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcc 225  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  27909181 atcactttattacttggtaaacgatttggtacacttgcc 27909219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 8503132 - 8503173
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaa 228  Q
    ||||| ||||||||||||||||||| ||||||||||||||||    
T  8503132 atcacgttattacttggtaaacgatttggtacacttgcctaa 8503173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 25887805 - 25887893
Alignment:
Q  54 ttacttttctgcaac--aaaacaagtaacttgctctgtttcaaacaactaaaaattg-aaatcgctaaccc-ttaactcttttatttta 138  Q
    |||||||||||||||  |||| | ||||||||||||||| ||||||  ||||||||| ||||| ||||||| |||||||||||| ||||    
T  25887805 ttacttttctgcaaccaaaaataggtaacttgctctgttgcaaacagataaaaattgcaaatctctaaccctttaactcttttacttta 25887893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 32085500 - 32085455
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||||||||||||||||| || |||||||||| |||||||||    
T  32085500 atcactttattacttggtaaacaatttggtacacttacctaatccg 32085455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 189
Target Start/End: Original strand, 45621789 - 45621919
Alignment:
Q  60 ttctgcaa-caaaacaagtaa-cttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaac-tcttttattttatatcgttaaactaaaata 156  Q
    |||||||| |||||||||||| |||||| |||| ||||||  ||||||||  || | |||||||||| | ||||||||||||| | ||| ||  ||||||    
T  45621789 ttctgcaatcaaaacaagtaaacttgctatgttgcaaacagataaaaattacaaactctaacccttatcatcttttattttattttgttcaa--aaaata 45621886  T
Q  157 agtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    ||||||  ||||||||| | |||||||||||||    
T  45621887 agtaacacgaattgtttggacgaaacgacaatc 45621919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 27908992 - 27909076
Alignment:
Q  26 gggggaatcgaagagtcttaaccgctacttacttttctgcaa-caaaacaagt-aacttgctctgtttcaaacaactaaaaattg 108  Q
    |||||| ||||||| || |||||||| |||| |||||||||| ||||||| || ||||||||||||| ||||||  |||||||||    
T  27908992 gggggattcgaagaatcctaaccgctgcttaattttctgcaaccaaaacaggtaaacttgctctgttgcaaacagataaaaattg 27909076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 12557772 - 12557811
Alignment:
Q  189 cactttattacttggtaaacgatctggtacacttgcctaa 228  Q
    ||||||||||||||||||| ||| ||||||||||||||||    
T  12557772 cactttattacttggtaaaagatttggtacacttgcctaa 12557811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 23933419 - 23933502
Alignment:
Q  26 gggggaatcgaagagtcttaaccgctacttacttttctgcaacaaaac-aagtaacttgctctgtttcaaacaactaaaaattg 108  Q
    |||||| || |||| || |||||||| ||||||||| || ||| |||| ||||||||||||||||| ||||||  |||||||||    
T  23933419 gggggattcaaagaatcctaaccgctgcttacttttgtgaaaccaaaccaagtaacttgctctgttgcaaacagataaaaattg 23933502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 28925746 - 28925663
Alignment:
Q  27 ggggaatcgaagagtcttaaccgctacttacttttctgcaa-caaaacaagt-aacttgctctgtttcaaacaactaaaaattg 108  Q
    ||||| ||||||| || ||||| || ||||||||||||||| ||||||| || |||||||| |||| ||||||| |||||||||    
T  28925746 ggggattcgaagaatcctaacctctgcttacttttctgcaaccaaaacaggtaaacttgctatgttgcaaacaaataaaaattg 28925663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 25196047 - 25196010
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcc 225  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  25196047 atcactttattacttggtaaacgat-tggtacacttgcc 25196010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 189
Target Start/End: Original strand, 29719106 - 29719269
Alignment:
Q  27 ggggaatcgaagagtcttaaccgctacttacttttctgcaacaaaaca-ag--taacttgctctgtttcaaacaactaaaaattg-aaatcgctaaccct 122  Q
    ||||| ||||||| || |||| ||| |||||||||||||||| ||||| ||   ||||||||||||| || |||  ||||||||| || || ||||||||    
T  29719106 ggggattcgaagaatcctaactgctgcttacttttctgcaaccaaacacaggtaaacttgctctgttgcatacatataaaaattgcaactctctaaccct 29719205  T
Q  123 taactcttttattttatatcgttaaact-aaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    ||  | |||||  ||||| ||| ||||| ||||||||||||| |||||||||   |||||||||||||    
T  29719206 ta--tatttta--ttataccgtcaaactaaaaataagtaacgcgaattgtttgaacgaaacgacaatc 29719269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 30411893 - 30411808
Alignment:
Q  26 gggggaatcgaagagtcttaaccgctacttacttttctgcaac--aaaacaagt-aacttgctctgtttcaaacaactaaaaattg 108  Q
    |||||| ||||| | || |||||||| ||||||||||||||||  |||||| || ||||||||||||| ||||||  |||||||||    
T  30411893 gggggattcgaaaaatcctaaccgctgcttacttttctgcaaccaaaaacatgtaaacttgctctgttgcaaacagataaaaattg 30411808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 5777314 - 5777277
Alignment:
Q  152 aaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    |||||||||||||||||||||| | |||||||||||||    
T  5777314 aaataagtaacgtgaattgtttggacgaaacgacaatc 5777277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 17198081 - 17198040
Alignment:
Q  27 ggggaatcgaagagtcttaaccgctacttacttttctgcaac 68  Q
    ||||| ||||||| ||||||||||| ||||||||||||||||    
T  17198081 ggggattcgaagaatcttaaccgctgcttacttttctgcaac 17198040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 17890152 - 17890079
Alignment:
Q  36 aagagtcttaaccgctacttacttttctgcaac-aaaacaagtaacttgctctgtttcaaacaactaaaaattg 108  Q
    |||| |||||| || | ||||| |||||||||| |||||| ||||||||||||||| ||||||  |||||||||    
T  17890152 aagaatcttaatcgttgcttacatttctgcaaccaaaacaggtaacttgctctgttgcaaacatataaaaattg 17890079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 26603233 - 26603317
Alignment:
Q  26 gggggaatcgaagagtcttaaccgctacttacttttctgcaac--aaaacaagtaacttgctctgtttcaaacaactaaaaattg 108  Q
    |||||| ||||||| || |||||||| ||||||||||| ||||  |||||| ||||  ||||||||| ||||||  |||||||||    
T  26603233 gggggattcgaagaatcctaaccgctgcttacttttctacaaccaaaaacaggtaaactgctctgttgcaaacagataaaaattg 26603317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 26603412 - 26603457
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||| ||||||| ||||| || ||||||||||||||||||||    
T  26603412 atcacttttttacttgataaacaatttggtacacttgcctaatccg 26603457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 12953359 - 12953399
Alignment:
Q  190 actttattacttggtaaacgatctggtacacttgcctaatc 230  Q
    ||||||||||||| |||| ||| ||||||||||||||||||    
T  12953359 actttattacttgataaatgatttggtacacttgcctaatc 12953399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 27418389 - 27418349
Alignment:
Q  192 tttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||||| ||||||||| ||||||| ||||||||||||    
T  27418389 tttattactttgtaaacgatttggtacatttgcctaatccg 27418349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 45621944 - 45621988
Alignment:
Q  188 tcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||||||||||||||||||| | |||||||| | |||||||    
T  45621944 tcactttattacttggtaaacgattttgtacactttcttaatccg 45621988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 45 - 189
Target Start/End: Complemental strand, 14528355 - 14528210
Alignment:
Q  45 aaccgctacttacttttctgcaacaaaacaag-taacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttattttatatcg 143  Q
    ||||||| |||||||||||||||| |||| || ||||||||| |||| |||||| |||||||||| |||| ||||||||||||| |||||||||||||||    
T  14528355 aaccgctgcttacttttctgcaaccaaaccaggtaacttgctttgttgcaaacagctaaaaattgcaatctctaacccttaactattttattttatatcg 14528256  T
Q  144 ttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    | |   ||||||||||||||||| |||||| | |||||||||||||    
T  14528255 tcagtttaaaataagtaacgtgagttgtttggacgaaacgacaatc 14528210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 26 - 163
Target Start/End: Complemental strand, 13698079 - 13697942
Alignment:
Q  26 gggggaatcgaagagtcttaaccgctacttacttttctgcaacaaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaa 125  Q
    |||||| || ||||||| ||| | || |||||||||||||||| ||||| ||||||||||||||| |||| |  ||||||||| |||| ||||||||||     
T  13698079 gggggattcaaagagtcataatcactgcttacttttctgcaaccaaacaggtaacttgctctgttgcaaagagataaaaattgcaatctctaacccttat 13697980  T
Q  126 ctcttttattttatatcgttaaactaaaataagtaacg 163  Q
    ||||| ||||||||||||| ||  ||||||||||||||    
T  13697979 ctcttgtattttatatcgtcaacttaaaataagtaacg 13697942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 163
Target Start/End: Original strand, 25182297 - 25182440
Alignment:
Q  22 atatgggggaatcgaagagtcttaaccgctacttacttttctgcaac--aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaac 119  Q
    |||||||||| || ||||||| ||||| ||  || ||||||||||||  |||||| ||||||||||||||| |||| |  ||||||||| |||| |||||    
T  25182297 atatgggggattcaaagagtcctaaccactgtttccttttctgcaaccaaaaacaggtaacttgctctgttgcaaatagataaaaattgcaatctctaac 25182396  T
Q  120 ccttaactcttttattttatatcgttaaactaaaataagtaacg 163  Q
    ||||| ||||||||||||||||||| ||  ||||||||||||||    
T  25182397 ccttatctcttttattttatatcgtcaacttaaaataagtaacg 25182440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 44 - 186
Target Start/End: Complemental strand, 34497323 - 34497179
Alignment:
Q  44 taaccgctacttacttttctgcaa-caaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaaccctt-aactcttttattttatat 141  Q
    |||||||| ||||||||||||||| |||| || ||||| |||| |||| |||| |  ||||||||| |||| ||||||||| ||||||||||||||||||    
T  34497323 taaccgctgcttacttttctgcaagcaaaccaggtaacatgctatgttgcaaaaagataaaaattgcaatctctaaccctttaactcttttattttatat 34497224  T
Q  142 cgttaaactaaaataagtaacgtgaattgtttaggcgaaacgaca 186  Q
    ||| ||  |||||||||||||||| ||||||| | ||||||||||    
T  34497223 cgtcaatttaaaataagtaacgtggattgtttggacgaaacgaca 34497179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 100 - 189
Target Start/End: Original strand, 30806441 - 30806530
Alignment:
Q  100 taaaaattgaaatcgctaacccttaactcttttattttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    ||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||| |  ||||||||||||    
T  30806441 taaaaattgcaatctctaacccttaactcttttattttatatcgtcaaactaaaataagtaacgcaaattgtttggatgaaacgacaatc 30806530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 189
Target Start/End: Original strand, 44010904 - 44011062
Alignment:
Q  33 tcgaagagtcttaaccgctacttacttttctgcaac--aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactctt 130  Q
    ||||||| |||||||||||||||||| |||||||||  |||||| |||||||| |||||| ||||||  ||||||||| |||| ||| |  | || ||||    
T  44010904 tcgaagaatcttaaccgctacttactcttctgcaaccaaaaacatgtaacttgttctgttgcaaacatataaaaattgcaatctctatcattcaaatctt 44011003  T
Q  131 tta-ttttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    ||| |||||| | |||||||  ||||| |||||||||||  ||| | |||||||||||||    
T  44011004 ttatttttattttgttaaac-caaatatgtaacgtgaatcattttgacgaaacgacaatc 44011062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 29382423 - 29382467
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatcc 231  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  29382423 atcactttattacttggtaaacgatttggtacacttgcctaatcc 29382467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 14528186 - 14528141
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||    
T  14528186 atcactttattacttggtaaacgatttggcacacttgcctaatccg 14528141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 19786912 - 19786795
Alignment:
Q  69 aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttattttatatcgttaaactaaaataagtaacgtgaat 168  Q
    |||||| ||||||||||||||| ||||||  ||||||||  |||| |||||  ||| ||||||||||||||||| | ||  ||||| |||||||  || |    
T  19786912 aaaacatgtaacttgctctgttgcaaacagataaaaattacaatctctaacttttatctcttttattttatatcatcaacttaaaacaagtaacacgagt 19786813  T
Q  169 tgtttaggcgaaacgaca 186  Q
    ||||| | ||||||||||    
T  19786812 tgtttggacgaaacgaca 19786795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 30235414 - 30235370
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatcc 231  Q
    ||||||||||||||||||||||||| | |||||||||||||||||    
T  30235414 atcactttattacttggtaaacgattttgtacacttgcctaatcc 30235370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 5850978 - 5850933
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||||||||||||||||||||  |||||||||| ||||||||    
T  5850978 atcactttattacttggtaaacgattaggtacacttgactaatccg 5850933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 13315054 - 13315098
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||    
T  13315054 atcactttattacttggtaaatgatctggtacactt-cctaatccg 13315098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 24114344 - 24114389
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||| ||||||||||||||||| || ||||||||||||||||||||    
T  24114344 atcattttattacttggtaaacaatttggtacacttgcctaatccg 24114389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 26008060 - 26008019
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaa 228  Q
    ||||||||||||||||||||| ||| ||||||||||||||||    
T  26008060 atcactttattacttggtaaatgatttggtacacttgcctaa 26008019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 19786767 - 19786723
Alignment:
Q  188 tcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||||||||||||||||||| ||||| ||||| ||||||||    
T  19786767 tcactttattacttggtaaacgatttggtatacttgtctaatccg 19786723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 24904731 - 24904691
Alignment:
Q  152 aaataagtaacgtgaattgtttaggcgaaacgacaatcact 192  Q
    |||||||||| ||||||||||||| ||||||||||||||||    
T  24904731 aaataagtaatgtgaattgtttagacgaaacgacaatcact 24904691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 34497153 - 34497109
Alignment:
Q  186 aatcactttattacttggtaaacgatctggtacacttgcctaatc 230  Q
    |||||||||||||||||||||||||| || || ||||||||||||    
T  34497153 aatcactttattacttggtaaacgatttgatagacttgcctaatc 34497109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 13697896 - 13697857
Alignment:
Q  190 actttattacttggtaaacgatctggtacacttgcctaat 229  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  13697896 actttattaattggtaaacgatttggtacacttgcctaat 13697857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 31288393 - 31288354
Alignment:
Q  189 cactttattacttggtaaacgatctggtacacttgcctaa 228  Q
    ||||||||||||||||||||||| |||||||||| |||||    
T  31288393 cactttattacttggtaaacgatttggtacactttcctaa 31288354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 5052985 - 5053026
Alignment:
Q  189 cactttattacttggtaaacgatctggtacacttgcctaatc 230  Q
    |||||||||||  |||||||||| ||||||||||||||||||    
T  5052985 cactttattacccggtaaacgatttggtacacttgcctaatc 5053026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 6884995 - 6884950
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||||||||| |||| ||||| | ||||||||||||||||||    
T  6884995 atcactttattactgggtacacgatttagtacacttgcctaatccg 6884950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 17976656 - 17976611
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||||||||||| |||| ||| ||| ||||||||||||||||    
T  17976656 atcactttattacttgataaatgatttggcacacttgcctaatccg 17976611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 24269633 - 24269592
Alignment:
Q  189 cactttattacttggtaaacgatctggtacacttgcctaatc 230  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  24269633 cactttattacttggtaaataatttggtacacttgcctaatc 24269592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 28276819 - 28276864
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||| ||| |||||||||||| || |||||||||||||||||    
T  28276819 atcacttttttatttggtaaacgatttgatacacttgcctaatccg 28276864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 30806559 - 30806604
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||||||||||  |||||||| || |||||||||||||||||    
T  30806559 atcactttattacttaataaacgatttgatacacttgcctaatccg 30806604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 24904670 - 24904630
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgccta 227  Q
    |||||||||||| |||||||| ||| |||||||||||||||    
T  24904670 atcactttattatttggtaaatgatttggtacacttgccta 24904630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 30783803 - 30783835
Alignment:
Q  187 atcactttattacttggtaaacgatctggtaca 219  Q
    ||||||||||||||||||||||||| |||||||    
T  30783803 atcactttattacttggtaaacgatttggtaca 30783835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 51)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 44 - 173
Target Start/End: Complemental strand, 8241481 - 8241352
Alignment:
Q  44 taaccgctacttacttttctgcaacaaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttattttatatcg 143  Q
    |||| ||| ||||||||||| |||| ||||| |||||||||| |||| ||||||  ||||||||| |||| ||||| |||||||||||||||||||||||    
T  8241481 taactgctgcttacttttctacaaccaaacaggtaacttgctatgttgcaaacagataaaaattgcaatctctaactcttaactcttttattttatatcg 8241382  T
Q  144 ttaaactaaaataagtaacgtgaattgttt 173  Q
    | |||||||||||||||| |||||||||||    
T  8241381 tgaaactaaaataagtaatgtgaattgttt 8241352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 35 - 189
Target Start/End: Complemental strand, 15466585 - 15466430
Alignment:
Q  35 gaagagtcttaaccgctacttacttttctgcaacaaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttat 134  Q
    |||||||  ||||||||  ||||||||||||||| ||| | ||||||||||||||| ||||||  ||||| ||| |||| ||||||||||||||||||||    
T  15466585 gaagagttctaaccgctgtttacttttctgcaaccaaataggtaacttgctctgttgcaaacagataaaatttgcaatctctaacccttaactcttttat 15466486  T
Q  135 t-ttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    | |||||||||||||  ||||||| ||||| ||||||||||| ||||| |||||||    
T  15466485 tattatatcgttaaaacaaaataactaacgcgaattgtttagacgaaatgacaatc 15466430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 54 - 190
Target Start/End: Complemental strand, 4339932 - 4339795
Alignment:
Q  54 ttacttttctgcaac-aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttattttatatcgttaaactaa 152  Q
    ||||||||||||||| |||||| ||||||||||  ||| ||||||| |||| |||| |||| |||||||||| ||||||||||||||||||| |||||||    
T  4339932 ttacttttctgcaaccaaaacaggtaacttgcttagttgcaaacaaataaatattgtaatctctaacccttatctcttttattttatatcgtcaaactaa 4339833  T
Q  153 aataagtaacgtgaattgtttaggcgaaacgacaatca 190  Q
    ||||||||| | |||||| || | | ||||||||||||    
T  4339832 aataagtaatgcgaattggttggacaaaacgacaatca 4339795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 173
Target Start/End: Complemental strand, 9838554 - 9838433
Alignment:
Q  53 cttacttttctgcaac-aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttattttatatcgttaaacta 151  Q
    |||||||||||||||| |||||  |||||||||||| || ||||||  ||||||||  |||| ||||| ||| |||||||||||||||||||| ||||||    
T  9838554 cttacttttctgcaaccaaaacgggtaacttgctcttttgcaaacagataaaaattacaatctctaacgcttcactcttttattttatatcgtcaaacta 9838455  T
Q  152 aaataagtaacgtgaattgttt 173  Q
    |||||||||||| || ||||||    
T  9838454 aaataagtaacgcgagttgttt 9838433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 189
Target Start/End: Original strand, 12183204 - 12183369
Alignment:
Q  26 gggggaatcgaagagtcttaaccgctacttacttttctgcaac-aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaaccctta 124  Q
    |||||| ||||||| || |||||| | |||||||||||| ||| |||||| |||||||||| |||| ||||||  |||| |||| |||| |||||| |||    
T  12183204 gggggattcgaagaatcctaaccgttgcttacttttctgtaaccaaaacaggtaacttgctatgttgcaaacagataaacattgcaatctctaaccttta 12183303  T
Q  125 a-ctcttttattttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    | ||||||||||||||||||| |   |||||||||||||||||||||||  | ||||| |||||||    
T  12183304 aactcttttattttatatcgtcaccttaaaataagtaacgtgaattgttaggacgaaatgacaatc 12183369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 189
Target Start/End: Complemental strand, 22568054 - 22567901
Alignment:
Q  36 aagagtcttaaccgctacttacttttctgcaacaaaacaag-taacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttat 134  Q
    ||||||| | |||| | |||||||||||||||| |||| || |||||  ||||||| ||||||  ||||| ||  |||| |||||||||||| |||||||    
T  22568054 aagagtcattaccgttgcttacttttctgcaaccaaactaggtaactgactctgttgcaaacagataaaa-ttacaatctctaacccttaacccttttat 22567956  T
Q  135 tttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    |||||||||||||  ||||||||||||||||| |||||| | |||||| ||||||    
T  22567955 tttatatcgttaacttaaaataagtaacgtgagttgtttggacgaaaccacaatc 22567901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 189
Target Start/End: Original strand, 23645659 - 23645805
Alignment:
Q  44 taaccgctacttacttttctgcaac-aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttattttatatc 142  Q
    ||||| || ||||||||| |||||| |||||| ||||||||||||||| ||||||| ||||||||| |||| |||||||| |||||||||||||||| |     
T  23645659 taaccactgcttacttttatgcaaccaaaacatgtaacttgctctgttgcaaacaaataaaaattgcaatctctaaccctcaactcttttattttatttt 23645758  T
Q  143 gttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
     ||   | ||||||| |||||  |||||||| | |||||||||||||    
T  23645759 attgttcaaaaataattaacgataattgtttggacgaaacgacaatc 23645805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 71 - 189
Target Start/End: Original strand, 28933580 - 28933698
Alignment:
Q  71 aacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttattttatatcgttaaactaaaataagtaacgtgaattg 170  Q
    |||||||||||||||||||| ||||||  ||||||||| |||| |||||||||| ||||||||||||||||| | ||  ||||||||| |||   |||||    
T  28933580 aacaagtaacttgctctgttgcaaacagataaaaattgcaatctctaacccttatctcttttattttatatcatcaacttaaaataagcaacacaaattg 28933679  T
Q  171 tttaggcgaaacgacaatc 189  Q
    ||| | |||||||| ||||    
T  28933680 tttggacgaaacgataatc 28933698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 190
Target Start/End: Original strand, 8039028 - 8039178
Alignment:
Q  44 taaccgctacttacttttctgcaac-aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttatt----tta 138  Q
    ||||| |||||||||||||| |||| |||| | |||||| | ||  || ||||||  ||||||||| |||| |||||||||||||||||||||    |||    
T  8039028 taaccactacttacttttctacaaccaaaataggtaactcgttcgattgcaaacatataaaaattgcaatctctaacccttaactcttttattattatta 8039127  T
Q  139 tatcgttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaatca 190  Q
    |||||| |||| ||||||||||||  ||||||||| |  |||||||||||||    
T  8039128 tatcgtcaaac-aaaataagtaacacgaattgtttggatgaaacgacaatca 8039178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 187
Target Start/End: Complemental strand, 11177131 - 11177013
Alignment:
Q  69 aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttattttatatcgttaaactaaaataagtaacgtgaat 168  Q
    |||||| |||||||||| |||| |||||   ||||||||| |||  |||||||||| ||||||||||||||||||| ||  |||||||||||||  ||||    
T  11177131 aaaacaggtaacttgctatgttgcaaacttataaaaattgcaatttctaacccttatctcttttattttatatcgtcaatttaaaataagtaacacgaat 11177032  T
Q  169 tgtttaggcgaaacgacaa 187  Q
    | ||| |  ||||||||||    
T  11177031 tatttcgaagaaacgacaa 11177013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 189
Target Start/End: Original strand, 6630574 - 6630730
Alignment:
Q  36 aagagtcttaaccgctacttacttttctgcaac--aaaacaagtaacttgctctgtttcaaacaac-taaaaattgaaatcgctaacccttaactctttt 132  Q
    ||||||| ||||||||| || | ||| ||||||  |||||| ||||||||||||||| |||| ||  ||||||||| |||| |||||| |||  ||||||    
T  6630574 aagagtcctaaccgctatttccatttttgcaaccaaaaacaggtaacttgctctgttgcaaaaaaaataaaaattgcaatctctaacctttatatctttt 6630673  T
Q  133 attttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    ||||||||| || ||  ||||||||||||||  |   |||||| |||||||||||||    
T  6630674 attttatattgtcaacttaaaataagtaacgcaagcggtttagacgaaacgacaatc 6630730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 9726059 - 9726014
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  9726059 atcactttattacttggtaaacgatttggtacacttgcctaatccg 9726014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 15466405 - 15466362
Alignment:
Q  189 cactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  15466405 cactttattacttggtaaacgatttggtacacttgcctaatccg 15466362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 12183393 - 12183438
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||    
T  12183393 atcactttattacttggtaaacgatttggtacacttgcataatccg 12183438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 17729189 - 17729144
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||    
T  17729189 atcactttattacttggtaaacgatttggtacacttacctaatccg 17729144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 21672497 - 21672542
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||    
T  21672497 atcactttattacttggtaaacgatttggtgcacttgcctaatccg 21672542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 21907469 - 21907424
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||    
T  21907469 atcactttattacttggtaaacgatttggtatacttgcctaatccg 21907424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 25927365 - 25927410
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||    
T  25927365 atcactttattacttggtaaacgttttggtacacttgcctaatccg 25927410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 27737751 - 27737796
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||    
T  27737751 atcactttattacttggtaaacgatttagtacacttgcctaatccg 27737796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 189
Target Start/End: Complemental strand, 21907659 - 21907493
Alignment:
Q  27 ggggaatcgaagagtcttaaccgctacttacttttctgcaac--aaaacaagtaacttgctctgtttcaaacaactaaaaatt--gaaatcgctaaccct 122  Q
    ||||| || ||||||| ||||||||  || ||||| ||||||  |||| |  |||||||||||||| ||||||  ||||||||  | |||  ||||||||    
T  21907659 ggggattcaaagagtcgtaaccgctgtttccttttttgcaaccaaaaatagctaacttgctctgttgcaaacagataaaaattatgtaatttctaaccct 21907560  T
Q  123 taactcttttattttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    || ||||||||||||||||| | ||  |||| ||||||||| || || ||| | |||||||||||||    
T  21907559 tatctcttttattttatatcatcaacttaaattaagtaacgcgacttttttggacgaaacgacaatc 21907493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 8039195 - 8039238
Alignment:
Q  189 cactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||    
T  8039195 cactttattacttggtaaacgatttggcacacttgcctaatccg 8039238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 19244622 - 19244579
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatc 230  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||    
T  19244622 atcactttattacttggtaaacgatctagtaaacttgcctaatc 19244579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 189
Target Start/End: Original strand, 27737560 - 27737727
Alignment:
Q  24 atgggggaatcgaagagtcttaaccgctacttacttttctgcaacaaaa-caagtaa-cttgctctgtttcaaacaactaaaaattg-aaatcgctaacc 120  Q
    |||| ||| ||||||| || |||||||| ||||||||| |||||||||| || |||| ||||||||||| ||||||  ||||||||| || || ||||||    
T  27737560 atggaggattcgaagaatcctaaccgctgcttacttttttgcaacaaaaacaggtaaacttgctctgttgcaaacagataaaaattgcaactctctaacc 27737659  T
Q  121 cttaactcttttattttatatcgttaa---actaaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    ||||  ||||| ||||  |||||| ||   || ||||||||||||| ||||||||| | |||||| ||||||    
T  27737660 ctta--tctttcattt--tatcgtcaacttacaaaaataagtaacgcgaattgtttggacgaaacaacaatc 27737727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 5624677 - 5624635
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaat 229  Q
    ||||||||||||||||||||||||| ||||||| |||||||||    
T  5624677 atcactttattacttggtaaacgatttggtacatttgcctaat 5624635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 14079506 - 14079548
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaat 229  Q
    |||||||||| |||||||||||||| |||||||||||||||||    
T  14079506 atcactttataacttggtaaacgatttggtacacttgcctaat 14079548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 142
Target Start/End: Complemental strand, 19244775 - 19244681
Alignment:
Q  50 ctacttacttttctgcaacaaaacaag-taacttgctctgtttcaaacaact-aaaaattgaaatcgctaacccttaactcttttattttatatc 142  Q
    |||||||||||||| |||| |||| || |||||||||||||| ||||||  | ||||| || |||| |||||||| | |||||||||||||||||    
T  19244775 ctacttacttttctacaaccaaaccaggtaacttgctctgttgcaaacagttcaaaaagtgcaatctctaaccctcatctcttttattttatatc 19244681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 22813612 - 22813678
Alignment:
Q  44 taaccgctacttacttttctgcaa-caaaacaagt-aacttgctctgtttcaaacaactaaaaattg 108  Q
    |||||||||||||||||||||||| ||||||| || |||||||| |||| ||||||| |||||||||    
T  22813612 taaccgctacttacttttctgcaaccaaaacaggtaaacttgctttgttgcaaacaaataaaaattg 22813678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 8241314 - 8241269
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||| |||||| ||||||||| ||||||||||||||||||||    
T  8241314 atcactttcttacttcgtaaacgatttggtacacttgcctaatccg 8241269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 21679913 - 21679958
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||| ||||||||| |||| |||||||||||||||    
T  21679913 atcactttattacttagtaaacgatttggtgcacttgcctaatccg 21679958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 169
Target Start/End: Original strand, 21688709 - 21688813
Alignment:
Q  65 caacaaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttattttatatcgttaaact-aaaataagtaacg 163  Q
    |||||||| | ||||||| |||| || ||||||  ||||||| | |||| ||||||  |||||||||||||||||||| || |||| |||||||||||||    
T  21688709 caacaaaataggtaacttcctctattacaaacatataaaaatcgcaatctctaacctctaactcttttattttatatc-ttcaactcaaaataagtaacg 21688807  T
Q  164 tgaatt 169  Q
     |||||    
T  21688808 cgaatt 21688813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 21932114 - 21932155
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaa 228  Q
    |||||||||||||||||||||| || ||||||||||||||||    
T  21932114 atcactttattacttggtaaacaatttggtacacttgcctaa 21932155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 23143759 - 23143714
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||||||| |||||||| ||| ||||||||||||||||||||    
T  23143759 atcactttattaattggtaaatgatttggtacacttgcctaatccg 23143714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 20005941 - 20005977
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttg 223  Q
    ||||||||||||||||||||||||| |||||||||||    
T  20005941 atcactttattacttggtaaacgatttggtacacttg 20005977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 20145122 - 20145166
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatcc 231  Q
    |||||||||||||||||| ||| || |||||||||||||||||||    
T  20145122 atcactttattacttggtgaacaatttggtacacttgcctaatcc 20145166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 22187717 - 22187673
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatcc 231  Q
    |||||||||||||||||| ||| || |||||||||||||||||||    
T  22187717 atcactttattacttggtgaacaatttggtacacttgcctaatcc 22187673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 22567876 - 22567832
Alignment:
Q  188 tcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||| |||||||||||||||| || ||||||||||||||||||||    
T  22567876 tcacgttattacttggtaaacaatttggtacacttgcctaatccg 22567832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 182
Target Start/End: Original strand, 25927197 - 25927334
Alignment:
Q  44 taaccgctacttacttttctgcaac-aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgc-taacccttaactcttttatt-ttata 140  Q
    ||||||||||| || ||| || ||| |||||| |||||||||||| || ||||||  ||||||||| |||| | ||||||| |||||||||||| || ||    
T  25927197 taaccgctactaacatttatgaaaccaaaacaggtaacttgctctattgcaaacagataaaaattgcaatctcttaaccctaaactcttttattatttta 25927296  T
Q  141 tcgttaaactaaaataagtaacgtgaattgtttaggcgaaac 182  Q
    | |||    || ||||||||||||||||||||| | ||||||    
T  25927297 ttgtt----tagaataagtaacgtgaattgtttggacgaaac 25927334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 136
Target Start/End: Original strand, 24252128 - 24252215
Alignment:
Q  50 ctacttacttttctgcaac-aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttattt 136  Q
    |||||||| |||||||||| |||||| | ||||||||||||| ||||||  ||||||||  |||  |||||||| | |||||||||||    
T  24252128 ctacttacatttctgcaaccaaaacacgaaacttgctctgttgcaaacagataaaaattacaatatctaaccctcatctcttttattt 24252215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 27124369 - 27124452
Alignment:
Q  27 ggggaatcgaagagtcttaaccgctacttacttttctgcaa-caaaacaagt-aacttgctctgtttcaaacaactaaaaattg 108  Q
    ||||| || |||| ||||||||||| ||||||||||||||| ||| ||| || ||||||||||||| ||||||  |||||||||    
T  27124369 ggggattcaaagaatcttaaccgctgcttacttttctgcaaccaagacaggtaaacttgctctgttgcaaacatataaaaattg 27124452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 27124554 - 27124589
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacactt 222  Q
    ||||||||||||||||||||||||| ||||||||||    
T  27124554 atcactttattacttggtaaacgatttggtacactt 27124589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 2586758 - 2586716
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaat 229  Q
    ||||||| |||||||||||||| || |||||||||||||||||    
T  2586758 atcacttcattacttggtaaacaatttggtacacttgcctaat 2586716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 20722240 - 20722278
Alignment:
Q  190 actttattacttggtaaacgatctggtacacttgcctaa 228  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  20722240 actttattacttggtaaacgatttggtacatttgcctaa 20722278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 7543022 - 7543067
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||||||||||||||||| || || |||| ||||||||||||    
T  7543022 atcactttattacttggtaaacaatttgatacatttgcctaatccg 7543067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 11176987 - 11176942
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||| |||| ||||||||||  |||||||||||||||||||    
T  11176987 atcactttagtactcggtaaacgattgggtacacttgcctaatccg 11176942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 18075450 - 18075495
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||||||||||||||||| || | |||||||| |||||||||    
T  18075450 atcactttattacttggtaaacaatttcgtacactttcctaatccg 18075495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 20005792 - 20005876
Alignment:
Q  27 ggggaatcgaagagtcttaaccgctacttacttttctgcaac--aaaacaagt-aacttgctctgtttcaaacaactaaaaattg 108  Q
    ||||| ||||||| ||||||||||| | ||| ||||||||||  |||||| || |||| |||||||| ||||||| |||||||||    
T  20005792 ggggattcgaagaatcttaaccgctgcatacctttctgcaaccaaaaacaggtaaactcgctctgttgcaaacaaataaaaattg 20005876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 25781889 - 25781852
Alignment:
Q  151 aaaataagtaacgtgaattgtttaggcgaaacgacaat 188  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  25781889 aaaataagtaacgtgaattgtttggacgaaacgacaat 25781852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 9516822 - 9516786
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttg 223  Q
    |||||||||||||| |||||||||| |||||||||||    
T  9516822 atcactttattactaggtaaacgatttggtacacttg 9516786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 20002444 - 20002484
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgccta 227  Q
    ||||||||||||||||||||  ||| |||||||||||||||    
T  20002444 atcactttattacttggtaattgatttggtacacttgccta 20002484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 23645829 - 23645861
Alignment:
Q  187 atcactttattacttggtaaacgatctggtaca 219  Q
    ||||||||||||||||||||||||| |||||||    
T  23645829 atcactttattacttggtaaacgatttggtaca 23645861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 24657333 - 24657425
Alignment:
Q  17 aatatatatgggggaatcgaagagtcttaaccgctacttacttttctgcaa-caaaacaagtaactt-gctctgtttcaaacaactaaaaatt 107  Q
    ||||||||  ||||| ||||||| |  |||||||| ||||||||||||||| ||||||| |||| || |||||||| ||||||  ||||||||    
T  24657333 aatatatagaggggattcgaagaattctaaccgctgcttacttttctgcaaccaaaacaggtaaattcgctctgttgcaaacagataaaaatt 24657425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0622 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0622
Description:

Target: scaffold0622; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 189
Target Start/End: Complemental strand, 953 - 789
Alignment:
Q  26 gggggaatcgaagagtcttaaccgctacttacttttctgcaacaaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaa 125  Q
    |||||| || ||||||| |||||||| |||| |||||| |||| ||||| ||| ||| ||||||| ||||||  |||||||||||||| |||||||||||    
T  953 gggggattcaaagagtcctaaccgctgcttagttttctacaaccaaacaggtatcttactctgttgcaaacaggtaaaaattgaaatctctaacccttaa 854  T
Q  126 ctcttttattttatatcgttaaactaaaataagtaacgt-gaattgtttaggcgaaacgacaatc 189  Q
    ||||||||||||||||| | ||  ||||||||||||||| | ||||||| | |||||||||||||    
T  853 ctcttttattttatatcttcaacttaaaataagtaacgtcggattgtttggacgaaacgacaatc 789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0622; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 765 - 722
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatc 230  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  765 atcactttattacttggtaaacgatttggtacacttgcctaatc 722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 181
Target Start/End: Complemental strand, 22664443 - 22664275
Alignment:
Q  15 aaaatatatatgggggaatcgaagagtcttaaccgctacttacttttctgcaac-aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatc 113  Q
    |||||| ||| || ||| || ||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||| ||||||||| |||     
T  22664443 aaaataaatacggaggattcaaagagtcctaaccgctacttacttttctgcaaccaaaacatgtaacttgctctgttacaaacaaataaaaattgcaatt 22664344  T
Q  114 g-ctaacccttaactcttttattttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaa 181  Q
      |||||||||| ||||||||||||||||||| ||  ||||||||| |||| || |||||||| |||||    
T  22664343 tactaacccttatctcttttattttatatcgtcaacttaaaataagcaacgcgagttgtttagacgaaa 22664275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 44 - 160
Target Start/End: Original strand, 18100905 - 18101022
Alignment:
Q  44 taaccgctacttacttttctgcaac-aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttattttatatc 142  Q
    |||||||| |||||||||||||||| |||||| |||||||||| |||| ||||||  ||||||||| |||  |||||||||||||||| |||||||||||    
T  18100905 taaccgctgcttacttttctgcaaccaaaacatgtaacttgctatgttgcaaacagataaaaattgcaatttctaacccttaactcttctattttatatc 18101004  T
Q  143 gttaaactaaaataagta 160  Q
    || ||| |||||||||||    
T  18101005 gtcaaattaaaataagta 18101022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 44 - 188
Target Start/End: Complemental strand, 33190884 - 33190739
Alignment:
Q  44 taaccgctacttacttttctgcaa-caaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttattttatatc 142  Q
    |||||||| ||||||||||||||| |||| || ||||||||| ||||| ||||||| ||||||||  |||| |||| |||||||| ||||||||||||||    
T  33190884 taaccgctgcttacttttctgcaatcaaaccaggtaacttgcactgttgcaaacaaataaaaattacaatctctaaaccttaactattttattttatatc 33190785  T
Q  143 gttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaat 188  Q
    || ||  |||||||||||||  || ||||||||  |||||||||||    
T  33190784 gtcaacttaaaataagtaacacgagttgtttagatgaaacgacaat 33190739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 175
Target Start/End: Original strand, 15807895 - 15808044
Alignment:
Q  27 ggggaatcgaagagtcttaaccgctacttacttttctgcaac-aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaa 125  Q
    ||||| || |||| || ||| |||| |||| |||||| |||| |||||  ||||||||||||||| ||||||| ||||||||| ||||  ||||| ||||    
T  15807895 ggggattcaaagaatcctaatcgctgcttatttttctacaaccaaaactggtaacttgctctgttgcaaacaaataaaaattgcaatccttaaccattaa 15807994  T
Q  126 ctcttttattttatatcgttaaactaaaataagtaacgtgaattgtttag 175  Q
    ||||||||||||||||| | |||||||||||||||| | || ||||||||    
T  15807995 ctcttttattttatatcttcaaactaaaataagtaatgcgagttgtttag 15808044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 44 - 171
Target Start/End: Complemental strand, 28008312 - 28008184
Alignment:
Q  44 taaccgctacttacttttctgcaac-aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttattttatatc 142  Q
    |||||||| |||||||||||||||| ||||||||||| ||||||| ||  |||||  ||||||||| |||| |||| |||| ||||||||||||||||||    
T  28008312 taaccgctgcttacttttctgcaaccaaaacaagtaatttgctctattggaaacagataaaaattgcaatctctaatcctttactcttttattttatatc 28008213  T
Q  143 gttaaactaaaataagtaacgtgaattgt 171  Q
    || ||  |||||||||||||  |||||||    
T  28008212 gtcaacttaaaataagtaacacgaattgt 28008184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 9787745 - 9787916
Alignment:
Q  18 atatatatgggggaatcgaagagtcttaaccgctacttacttttctgcaac--aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgc 115  Q
    |||||||||||| | || ||||||  ||||||| |||||||||||||||||  |||||| || |||||||||||| ||||||  | ||||||| |||| |    
T  9787745 atatatatgggg-attcaaagagttctaaccgcaacttacttttctgcaaccaaaaacaggtcacttgctctgttgcaaacagttcaaaattgcaatctc 9787843  T
Q  116 taacccttaactcttttattttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaat 188  Q
    ||||||||  ||||| ||||||||||| | ||  ||||||||||||   || |||||||| ||||||||||||    
T  9787844 taacccttttctcttctattttatatcataaacttaaaataagtaattggagttgtttagacgaaacgacaat 9787916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 55 - 172
Target Start/End: Complemental strand, 24281472 - 24281355
Alignment:
Q  55 tacttttctgcaacaaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttattttatatcgttaaactaaaa 154  Q
    ||||||||| |||| ||||| ||||||| ||||||||||||||  || |||||| |||| ||||||||| ||||||||||||||||| || ||  |||||    
T  24281472 tacttttctacaaccaaacatgtaactttctctgtttcaaacagatagaaattgcaatctctaaccctttactcttttattttatattgtcaacttaaaa 24281373  T
Q  155 taagtaacgtgaattgtt 172  Q
    |||||||||  |||||||    
T  24281372 taagtaacgcaaattgtt 24281355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 102 - 189
Target Start/End: Complemental strand, 147778 - 147692
Alignment:
Q  102 aaaattgaaatcgctaacccttaactcttttattttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    |||||||||||| |||||||||| ||||||||||| ||||||| ||| |||||||||||||| ||  ||||||| ||||| |||||||    
T  147778 aaaattgaaatctctaacccttatctcttttattt-atatcgtcaaattaaaataagtaacgcgagctgtttagacgaaatgacaatc 147692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 12012715 - 12012797
Alignment:
Q  54 ttacttttctgcaac-aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttatt 135  Q
    |||||||| |||||| |||||| |||||| ||| |||| ||||||| ||||||||| |||| |||||||||||||||||||||    
T  12012715 ttacttttgtgcaaccaaaacaggtaactcgctatgttgcaaacaaataaaaattgcaatctctaacccttaactcttttatt 12012797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 149
Target Start/End: Original strand, 17121381 - 17121499
Alignment:
Q  33 tcgaagagtcttaaccgctacttacttttctgcaa-caaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgc-taacccttaactctt 130  Q
    ||||||| || |||||||| ||||||||||||||| |||||||||||||||||||| || ||||||| | |||| || |||| | || |||| |||||||    
T  17121381 tcgaagaatcctaaccgctgcttacttttctgcaaccaaaacaagtaacttgctctattgcaaacaaatgaaaaatgcaatctcttatccctcaactctt 17121480  T
Q  131 ttattttatatcgttaaac 149  Q
    |||||| || | |||||||    
T  17121481 ttatttaattttgttaaac 17121499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 17359199 - 17359154
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  17359199 atcactttattacttggtaaacgatttggtacacttgcctaatccg 17359154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 23038073 - 23038117
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatcc 231  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  23038073 atcactttattacttggtaaacgatttggtacacttgcctaatcc 23038117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 32383060 - 32383102
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaat 229  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  32383060 atcactttattacttggtaaacgatttggtacacttgcctaat 32383102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 21449126 - 21449081
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||    
T  21449126 atcactttattacttggtaaacgatttggtacacttgcctgatccg 21449081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 189
Target Start/End: Complemental strand, 21847814 - 21847694
Alignment:
Q  69 aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttatttta-tatcgttaaactaaaataagtaacgtgaa 167  Q
    |||| ||||||  ||||| ||| ||||||| ||||||||| |||| ||| || | ||||||||||||||| | | ||||||| | | |||||||||||||    
T  21847814 aaaataagtaaactgctccgttgcaaacaaataaaaattgcaatctctatccttcaactcttttattttaattttgttaaaccaga-taagtaacgtgaa 21847716  T
Q  168 ttgtttaggcgaaacgacaatc 189  Q
    |||||| | |||||||||||||    
T  21847715 ttgtttggacgaaacgacaatc 21847694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 189
Target Start/End: Complemental strand, 24214763 - 24214605
Alignment:
Q  26 gggggaatcgaagagtcttaaccgctacttacttttctgcaacaaaacaag-taacttgctctgtttcaaacaactaaaaattgaaatcgctaaccctta 124  Q
    |||||| || ||||||| ||||||||||||| ||||||||||| |||| || |||||||  ||      ||||  ||||||||  |||  | ||||||||    
T  24214763 gggggattcaaagagtcctaaccgctacttatttttctgcaaccaaaccaggtaacttggcct------aacagataaaaattccaatttcaaaccctta 24214670  T
Q  125 actcttttattttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    | ||||||||||||||||||  |  ||||||||||||||| | |||||||| |||||| ||||||    
T  24214669 attcttttattttatatcgtccacttaaaataagtaacgtaagttgtttagacgaaacaacaatc 24214605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 27117780 - 27117825
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||    
T  27117780 atcactttattacttggtaaacgatttggtaaacttgcctaatccg 27117825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 21847668 - 21847629
Alignment:
Q  190 actttattacttggtaaacgatctggtacacttgcctaat 229  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  21847668 actttattacttggtaaacgatttggtacacttgcctaat 21847629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 26540931 - 26540892
Alignment:
Q  189 cactttattacttggtaaacgatctggtacacttgcctaa 228  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  26540931 cactttattacttggtaaacgatttggtacacttgcctaa 26540892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 15544028 - 15544066
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcc 225  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  15544028 atcactttattacttggtaaacgatttggtacacttgcc 15544066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 16359903 - 16359865
Alignment:
Q  192 tttattacttggtaaacgatctggtacacttgcctaatc 230  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  16359903 tttattacttggtaaacgatttggtacacttgcctaatc 16359865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 17837551 - 17837509
Alignment:
Q  190 actttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||| || ||||||||||||||||||||    
T  17837551 actttattacttggtaaacaatttggtacacttgcctaatccg 17837509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 22664243 - 22664201
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaat 229  Q
    ||||||||||||||||||||||||| ||||||| |||||||||    
T  22664243 atcactttattacttggtaaacgatttggtacatttgcctaat 22664201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 24281314 - 24281272
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaat 229  Q
    ||||||||||||||||||||||||| ||||||| |||||||||    
T  24281314 atcactttattacttggtaaacgatttggtacatttgcctaat 24281272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 3591715 - 3591760
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||||||||||| |||||||| | ||||||||||||||||||    
T  3591715 atcactttattacttgataaacgattttgtacacttgcctaatccg 3591760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 9787941 - 9787986
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||||    
T  9787941 atcactttattacttgctaaatgatttggtacacttgcctaatccg 9787986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 15813216 - 15813261
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||| || |||||||| ||||||||||||||||||||    
T  15813216 atcactttattacatgataaacgatttggtacacttgcctaatccg 15813261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 189
Target Start/End: Original strand, 23037913 - 23038050
Alignment:
Q  54 ttacttttctgcaac--aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgct-aacccttaactcttttattttatatcgttaaact 150  Q
    |||| ||||||||||  ||||||||||||||||| |||| ||||||   |||||||| |||  || |||| ||| ||||||||||||||  | | |||||    
T  23037913 ttacatttctgcaaccaaaaacaagtaacttgctatgttgcaaacagaaaaaaattgtaatttctcaaccattatctcttttattttat--catcaaact 23038010  T
Q  151 -aaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
     ||||||||||||| || |||||| | |||||||||||||    
T  23038011 taaaataagtaacgagagttgttttgacgaaacgacaatc 23038050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 24306367 - 24306412
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||||||  ||||||||||||| ||||||    
T  24306367 atcactttattacttggtaaacgacttggtacacttgccaaatccg 24306412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 13345398 - 13345442
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatcc 231  Q
    |||||||||||||||||||||| || ||||||||||||| |||||    
T  13345398 atcactttattacttggtaaacaatttggtacacttgcccaatcc 13345442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 13345302 - 13345374
Alignment:
Q  116 taacccttaactcttttattttatatcgttaaacta-aaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    ||||| ||||||||||||||||||  ||| |||||| |||||||||||| ||||||||| | | |||||||||||    
T  13345302 taacctttaactcttttattttat--cgtcaaactataaataagtaacgcgaattgtttggacaaaacgacaatc 13345374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 25961039 - 25961094
Alignment:
Q  26 gggggaatcgaagagtcttaaccgctacttacttttctgcaacaaaacaagtaact 81  Q
    |||||| || ||||||| |||||||| |||||||||||||||| ||||| ||||||    
T  25961039 gggggattcaaagagtcctaaccgcttcttacttttctgcaaccaaacaggtaact 25961094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 12208638 - 12208600
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcc 225  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  12208638 atcactttattacttggtaaacgatttagtacacttgcc 12208600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 17610256 - 17610294
Alignment:
Q  151 aaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  17610256 aaaataagtaacgtgaattgtttggacgaaacgacaatc 17610294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 18736302 - 18736340
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcc 225  Q
    |||||||||||||||| |||||||| |||||||||||||    
T  18736302 atcactttattacttgttaaacgatttggtacacttgcc 18736340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 25405692 - 25405730
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcc 225  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  25405692 atcactttattacttggtaaacgacttggtacacttgcc 25405730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 12208827 - 12208754
Alignment:
Q  26 gggggaatcgaagagtcttaaccgctacttacttttctgcaac-aaaacaagt-aacttgctctgtttcaaaca 97  Q
    |||||| ||||||| || |||||||| |||||||||||||| | |||||| || ||||||||||||| ||||||    
T  12208827 gggggattcgaagaatcctaaccgctgcttacttttctgcagctaaaacaggtaaacttgctctgttgcaaaca 12208754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 16787644 - 16787764
Alignment:
Q  68 caaaacaagtaacttgctctgtttcaaacaactaaaaattg-aaatcgct-aacccttaactcttttattttatatcgttaaactaaaataagtaacgtg 165  Q
    |||||||||||| ||||| |||| ||||||  ||||||||| ||||| || |||||| ||||||| ||| || ||| ||| ||   ||||||||||||      
T  16787644 caaaacaagtaatttgctatgttgcaaacatataaaaattgcaaatctcttaaccctaaactcttatatattttattgttcaa---aaataagtaacgca 16787740  T
Q  166 aattgtttaggcgaaacgacaatc 189  Q
    |||||||| ||| |||||||||||    
T  16787741 aattgtttgggcaaaacgacaatc 16787764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 17610321 - 17610354
Alignment:
Q  190 actttattacttggtaaacgatctggtacacttg 223  Q
    |||||||||||||||||||||| |||||||||||    
T  17610321 actttattacttggtaaacgatttggtacacttg 17610354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 12012862 - 12012906
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatcc 231  Q
    ||||||||| |||||| |||||||| || ||||||||||||||||    
T  12012862 atcactttaatacttgataaacgatttgatacacttgcctaatcc 12012906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 25405522 - 25405588
Alignment:
Q  44 taaccgctacttacttttctgcaac--aaaacaagtaa-cttgctctgtttcaaacaactaaaaattg 108  Q
    |||||||| |||||||| |||||||  ||||||||||| ||||||||||| ||||||| |||||||||    
T  25405522 taaccgctgcttacttt-ctgcaaccaaaaacaagtaaacttgctctgttgcaaacaaataaaaattg 25405588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 2681 - 2855
Alignment:
Q  15 aaaatatatatgggggaatcgaagagtcttaaccgctacttacttttctgcaacaaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcg 114  Q
    |||||| ||| || ||| ||||||||||||||||| |  |||||||||| ||||||| || |||||||||| |||| |||| || ||||||||| ||||     
T  2681 aaaataaatagggaggattcgaagagtcttaaccgttgtttacttttctacaacaaaccatgtaacttgctatgttgcaaataaataaaaattgcaatct 2780  T
Q  115 ctaacccttaactcttttatt-ttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaat 188  Q
    ||||||||||||||||||||| |||||| || |||  ||||||||||||  ||||||||| | ||||||||||||    
T  2781 ctaacccttaactcttttattattatattgtcaaaacaaaataagtaacacgaattgtttggacgaaacgacaat 2855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 26 - 189
Target Start/End: Original strand, 43100 - 43265
Alignment:
Q  26 gggggaatcgaagagtcttaaccgctacttacttttctgcaac--aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaaccctt 123  Q
    |||||| || ||||||||||||||||| ||  ||||||| |||  |||||| ||||||||||||||| ||||||  ||||||||| |||| |||||||||    
T  43100 gggggattcaaagagtcttaaccgctattttgttttctgtaaccaaaaacaggtaacttgctctgttgcaaacagataaaaattgcaatctctaaccctt 43199  T
Q  124 aactcttttattttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    | ||||||||||||||||||| ||  |||||||||||||  ||  ||||||| |||||||||||||    
T  43200 atctcttttattttatatcgtcaatttaaaataagtaacacgagctgtttagacgaaacgacaatc 43265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 65)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 36 - 173
Target Start/End: Complemental strand, 3734811 - 3734673
Alignment:
Q  36 aagagtcttaaccgctacttacttttctgcaac-aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttat 134  Q
    ||||||| |||||  | |||||||||||||||| |||||| ||||||||||||||| ||||||  ||||| ||| ||||  |||||||||||||||||||    
T  3734811 aagagtcctaaccattgcttacttttctgcaaccaaaacaggtaacttgctctgttgcaaacagataaaatttgcaatctttaacccttaactcttttat 3734712  T
Q  135 tttatatcgttaaactaaaataagtaacgtgaattgttt 173  Q
    |||||||||| ||  ||||||||||||||||||||||||    
T  3734711 tttatatcgtcaacttaaaataagtaacgtgaattgttt 3734673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 26 - 189
Target Start/End: Original strand, 17153027 - 17153192
Alignment:
Q  26 gggggaatcgaagagtcttaaccgctacttacttttctgcaac--aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaaccctt 123  Q
    |||||| || ||||||| |||||||| ||||||||||||||||  |||||| |||||||||| |||| ||||||  |||||||   |||| |||||||||    
T  17153027 gggggattcaaagagtcataaccgctgcttacttttctgcaaccaaaaacaggtaacttgctttgttgcaaacagataaaaataacaatctctaaccctt 17153126  T
Q  124 aactcttttattttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    | |||||||||||||| |||| ||  |||||||||||||| ||  ||||||| |||||||||||||    
T  17153127 atctcttttattttatgtcgtcaacttaaaataagtaacgcgagctgtttagacgaaacgacaatc 17153192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 57 - 189
Target Start/End: Complemental strand, 7318468 - 7318334
Alignment:
Q  57 cttttctgcaac--aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttattttatatcgttaaactaaaa 154  Q
    ||||||||||||  |||| ||||||||||||||||| ||||||  ||||||||| |||| |||||||||| ||||||||||||||||||| ||  |||||    
T  7318468 cttttctgcaaccaaaaagaagtaacttgctctgttgcaaacagataaaaattgcaatctctaacccttatctcttttattttatatcgtcaacttaaaa 7318369  T
Q  155 taagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    ||||||| | ||  ||||||| |||||||||||||    
T  7318368 taagtaatgcgagctgtttagacgaaacgacaatc 7318334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 161
Target Start/End: Complemental strand, 6013808 - 6013682
Alignment:
Q  36 aagagtcttaaccgctacttacttttctgcaacaaaacaagtaacttgctctgtttcaaacaactaaaaa-ttgaaatcgctaacccttaactcttttat 134  Q
    ||||||| |||||| | || ||||||||||||| ||||| |||| ||||| |||| ||||||| |||||| ||| |||||||||||||| ||||||||||    
T  6013808 aagagtcataaccgttgctcacttttctgcaaccaaacatgtaaattgctttgttgcaaacaaataaaaaattgcaatcgctaaccctttactcttttat 6013709  T
Q  135 tttatatcgttaaactaaaataagtaa 161  Q
    |||||||| | ||||||||||||||||    
T  6013708 tttatatcatcaaactaaaataagtaa 6013682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 189
Target Start/End: Complemental strand, 18662665 - 18662502
Alignment:
Q  26 gggggaatcgaagagtcttaaccgctacttacttttctgcaac-aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaaccctta 124  Q
    |||||| |||||||||| |||||||| ||||| |||||||||| |||||| ||||||||||||||| ||||||| ||||||||| |||  ||||| || |    
T  18662665 gggggattcgaagagtcctaaccgctgcttacatttctgcaaccaaaacaggtaacttgctctgttgcaaacaaataaaaattgcaatatctaactctca 18662566  T
Q  125 actcttttattt-tatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    | |||||||||| ||| | ||| | |  |||||||||||||||||||||| | |||||||||||||    
T  18662565 aatcttttatttatattttgttcacc--aaataagtaacgtgaattgtttggacgaaacgacaatc 18662502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 27 - 189
Target Start/End: Original strand, 10586898 - 10587062
Alignment:
Q  27 ggggaatcgaagagtcttaaccgctacttacttttctgcaacaa--aacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaaccctta 124  Q
    ||||| || ||||||||||||| || ||||||||| |||||| |  |||| ||| ||||||||||| ||||||  ||||||||| ||||  |||||||||    
T  10586898 ggggattcaaagagtcttaaccactgcttacttttttgcaaccagaaacatgtatcttgctctgttgcaaacagataaaaattgcaatctttaaccctta 10586997  T
Q  125 actcttttattttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
      ||||||||||||||| || ||  ||||||||||||| ||| |||||||| |||||||||||||    
T  10586998 tttcttttattttatattgtaaacttaaaataagtaacatgagttgtttagacgaaacgacaatc 10587062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 189
Target Start/End: Complemental strand, 4786064 - 4785897
Alignment:
Q  28 gggaatcgaagagtcttaaccgctacttacttttctgcaac--aaaacaagtaacttgctctgtttcaaacaactaaaaa----ttgaaatcgctaaccc 121  Q
    |||| ||||||| || |||||||| ||||||||||||||||  |||||| |||||||||||| || |||| |  ||||||    |  ||||| |||||||    
T  4786064 gggattcgaagaatcctaaccgctgcttacttttctgcaaccaaaaacaggtaacttgctctattgcaaatagataaaaaaaattaaaaatctctaaccc 4785965  T
Q  122 ttaactcttttattttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    ||||||||||||||||||||||| ||   ||||||||||||||||| || || | |||||||||||||    
T  4785964 ttaactcttttattttatatcgtcaactaaaaataagtaacgtgaagtgcttggacgaaacgacaatc 4785897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 53 - 162
Target Start/End: Original strand, 8313293 - 8313403
Alignment:
Q  53 cttacttttctgcaac-aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttattttatatcgttaaacta 151  Q
    |||||||||||||||| |||| | |||||||||||||||  |||||  ||||||||| |||| |||||||||||||||||||||||||| | | ||  ||    
T  8313293 cttacttttctgcaaccaaaataggtaacttgctctgttgaaaacagataaaaattgcaatctctaacccttaactcttttattttataccttcaactta 8313392  T
Q  152 aaataagtaac 162  Q
    |||||||||||    
T  8313393 aaataagtaac 8313403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 189
Target Start/End: Complemental strand, 4986723 - 4986616
Alignment:
Q  82 tgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttattttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaa 181  Q
    ||||||| ||||||||  ||||||||| |||| |||||||||||| |||||||||| |||||| ||  |||||||||||||| ||  | ||||| |||||    
T  4986723 tgctctgcttcaaacagataaaaattgcaatctctaacccttaacacttttattttttatcgtcaacttaaaataagtaacgcgagctatttagacgaaa 4986624  T
Q  182 cgacaatc 189  Q
    ||||||||    
T  4986623 cgacaatc 4986616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 189
Target Start/End: Complemental strand, 4990821 - 4990714
Alignment:
Q  82 tgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttattttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaa 181  Q
    ||||||| ||||||||  ||||||||| |||| |||||||||||| |||||||||| |||||| ||  |||||||||||||| ||  | ||||| |||||    
T  4990821 tgctctgcttcaaacagataaaaattgcaatctctaacccttaacacttttattttttatcgtcaacttaaaataagtaacgcgagctatttagacgaaa 4990722  T
Q  182 cgacaatc 189  Q
    ||||||||    
T  4990721 cgacaatc 4990714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 7492163 - 7492248
Alignment:
Q  53 cttacttttctgcaac--aaaacaagtaacttgctctgtttcaaacaactaaaaattg-aaatcgctaacccttaactcttttatt 135  Q
    ||||||||||||||||  |||||| ||||||||||||||| ||||||  ||||||||| ||||| |||||||||||||||||||||    
T  7492163 cttacttttctgcaaccaaaaacaggtaacttgctctgttgcaaacagttaaaaattgcaaatctctaacccttaactcttttatt 7492248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 173
Target Start/End: Complemental strand, 1587884 - 1587758
Alignment:
Q  47 ccgctacttacttttctgcaacaaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgct--aacccttaactcttttattttatatcgt 144  Q
    ||||| |||||||||||||||| ||  | ||||||||||||||| ||||||| ||||||||| |||| ||  |||||| || ||||||||||||||||||    
T  1587884 ccgctgcttacttttctgcaaccaag-aggtaacttgctctgttgcaaacaaataaaaattgcaatctctctaaccctaaa-tcttttattttatatcgt 1587787  T
Q  145 taaactaaaataagtaacgtgaattgttt 173  Q
     |||  |||||| |||||| |||||||||    
T  1587786 caaaacaaaataggtaacgcgaattgttt 1587758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 189
Target Start/End: Complemental strand, 4818977 - 4818897
Alignment:
Q  109 aaatcgctaacccttaactcttttattttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    ||||| |||||||||||||||||||||||||||||| ||   ||||||||||||||||| || || | |||||||||||||    
T  4818977 aaatctctaacccttaactcttttattttatatcgtcaactaaaaataagtaacgtgaagtgcttggacgaaacgacaatc 4818897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 9131138 - 9131019
Alignment:
Q  24 atgggggaatcgaagagtcttaaccgctacttacttttctgcaac--aaaacaagtaacttgctctgtttcaaacaactaaaaattg-aaatcgctaacc 120  Q
    |||||||| ||||||| || |||||||  ||||||||| ||||||  ||||||  ||||||||||| || ||||||| ||||||||| ||||| ||||||    
T  9131138 atgggggattcgaagaatcctaaccgcagcttacttttttgcaaccaaaaacagttaacttgctctattgcaaacaaataaaaattgcaaatctctaacc 9131039  T
Q  121 c-ttaactcttttattttat 139  Q
    | ||||||||||||||||||    
T  9131038 ccttaactcttttattttat 9131019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 189
Target Start/End: Complemental strand, 9574604 - 9574468
Alignment:
Q  54 ttacttttctgcaa-caaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttattttatatcgttaaactaa 152  Q
    |||||||||| ||| |||| || || ||||||||| || ||||||  ||||||||  |||  |||||||||||||||||||||||||||||| ||  |||    
T  9574604 ttacttttcttcaaacaaaccaggttacttgctctattgcaaacagataaaaattacaatttctaacccttaactcttttattttatatcgtcaacttaa 9574505  T
Q  153 aataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    ||||| ||||| || | |||||| |||||| ||||||    
T  9574504 aataaataacgcgagtcgtttagacgaaacaacaatc 9574468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 163
Target Start/End: Complemental strand, 1584428 - 1584319
Alignment:
Q  53 cttacttttctgcaacaaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttattttatatcgttaaactaa 152  Q
    ||||||||||| |||| ||| | |||||||||| | || |||| |  ||||||||| |||| |||||| ||||||||||||||||||||||| |||  ||    
T  1584428 cttacttttctacaaccaaataggtaacttgcttt-ttgcaaaaagataaaaattgcaatctctaacctttaactcttttattttatatcgtcaaaacaa 1584330  T
Q  153 aataagtaacg 163  Q
    |||||||||||    
T  1584329 aataagtaacg 1584319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 189
Target Start/End: Original strand, 3190957 - 3191097
Alignment:
Q  48 cgctacttacttttctgcaacaaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttattttatatcgttaa 147  Q
    ||||||||||||||||||||| ||| |  ||||||| |||||| ||||||  ||||||||  |||| |||||||  ||| ||||| ||||||||| | ||    
T  3190957 cgctacttacttttctgcaaccaaatagataacttg-tctgttgcaaacatataaaaattacaatctctaacccaaaacccttttgttttatatcctcaa 3191055  T
Q  148 actaaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
      |||||||| ||||  ||||||||| | |||||||||||||    
T  3191056 cttaaaataaataacacgaattgtttggacgaaacgacaatc 3191097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 7318310 - 7318265
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  7318310 atcactttattacttggtaaacgatatggtacacttgcctaatccg 7318265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 10587086 - 10587130
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatcc 231  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  10587086 atcactttattacttggtaaacgatttggtacacttgcctaatcc 10587130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 133
Target Start/End: Complemental strand, 17829794 - 17829686
Alignment:
Q  26 gggggaatcgaagagtcttaaccgctacttacttttctgcaac-aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaaccctta 124  Q
    |||||| ||||||| |||||||| || |||| |||||| |||| ||||||  ||||||| |||||| ||||||  ||||||||  |||||||||||||||    
T  17829794 gggggattcgaagaatcttaaccactgcttaattttctccaaccaaaacagttaacttgttctgttgcaaacagataaaaattacaatcgctaaccctta 17829695  T
Q  125 actctttta 133  Q
    |||| ||||    
T  17829694 actccttta 17829686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 189
Target Start/End: Original strand, 9731518 - 9731665
Alignment:
Q  44 taaccgctacttacttttctgcaac--aaaacaagtaacttgctctgtttcaaacaactaaaaattg-aaatcgctaacccttaactcttttattttata 140  Q
    |||||||| ||||||||| ||||||  |||||| |||||||||| |||| || | |  ||||||||| ||||| ||||  | |||||||||||||||||     
T  9731518 taaccgctgcttacttttatgcaaccaaaaacaggtaacttgctatgttacacatagataaaaattgcaaatctctaattcgtaactcttttattttat- 9731616  T
Q  141 tcgttaaactaaaa-taagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
     | | ||||||||| ||||||||| ||||||||| | |||||||||||||    
T  9731617 -catcaaactaaaaataagtaacgcgaattgtttggacgaaacgacaatc 9731665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 132
Target Start/End: Original strand, 16297725 - 16297815
Alignment:
Q  44 taaccgctacttacttttctgcaac--aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactctttt 132  Q
    |||||||| ||||||||||||||||  |||| | ||||||| ||||||| ||||||  ||||||||| |||  ||||||||||||||||||    
T  16297725 taaccgctgcttacttttctgcaaccaaaaataggtaacttactctgttgcaaacatataaaaattgcaatttctaacccttaactctttt 16297815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 1848091 - 1848185
Alignment:
Q  17 aatatatatgggg-gaatcgaagagtcttaaccgctacttacttttctgcaa-caaaacaagt-aacttgctctgtttcaaacaactaaaaattg 108  Q
    ||||||||| ||| || ||||||| || |||||||| ||||||||||||||| ||||||| || ||||||||||||||||||||  |||||||||    
T  1848091 aatatatatagggagattcgaagaatcataaccgctgcttacttttctgcaaccaaaacaggtaaacttgctctgtttcaaacagataaaaattg 1848185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 9864388 - 9864433
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||||||||||||||||| || ||||||||||||||||||||    
T  9864388 atcactttattacttggtaaacaatttggtacacttgcctaatccg 9864433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 15869632 - 15869588
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatcc 231  Q
    ||||||||||||||||||||||||| || ||||||||||||||||    
T  15869632 atcactttattacttggtaaacgatttgatacacttgcctaatcc 15869588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 2563853 - 2563810
Alignment:
Q  189 cactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||||| |||||||||||| |||||||    
T  2563853 cactttattacttggtaaacgatttggtacacttgcataatccg 2563810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 4986590 - 4986547
Alignment:
Q  189 cactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||    
T  4986590 cactttattacttggtaaacgatttggtacacttgtctaatccg 4986547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 4990688 - 4990645
Alignment:
Q  189 cactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||    
T  4990688 cactttattacttggtaaacgatttggtacacttgtctaatccg 4990645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 182
Target Start/End: Original strand, 14195846 - 14196004
Alignment:
Q  26 gggggaatcgaagagtcttaaccgctacttacttttctgcaa-caaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgc-taaccctt 123  Q
    |||||| ||||||| ||||||  | | ||||| ||||||||| |||||||  |||||||||||||| ||||||  ||||||||| |||| | || || |     
T  14195846 gggggattcgaagaatcttaattgttgcttacatttctgcaatcaaaacagataacttgctctgttgcaaacagataaaaattgcaatctcttatccatc 14195945  T
Q  124 aactcttttattt-tatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaac 182  Q
    ||||||||||||| ||| | |||||||  |||||||||||| ||||||||| | ||||||    
T  14195946 aactcttttatttatattttgttaaac-gaaataagtaacgcgaattgtttggacgaaac 14196004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 19153335 - 19153292
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatc 230  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||    
T  19153335 atcactttattacttggtaaaagatttggtacacttgcctaatc 19153292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 20752734 - 20752691
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatc 230  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||    
T  20752734 atcactttattacttggtaaaagatttggtacacttgcctaatc 20752691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 8054120 - 8054158
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcc 225  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  8054120 atcactttattacttggtaaacgatttggtacacttgcc 8054158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 189
Target Start/End: Complemental strand, 16365924 - 16365766
Alignment:
Q  33 tcgaagagtcttaaccgctacttacttttctgcaac--aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaa-tcgctaacccttaactct 129  Q
    ||||||| || |||||||| ||||||||| ||||||  |||||| ||||||||||| | | |||| |  | |||||||||| || |||| ||||||||||    
T  16365924 tcgaagaatcctaaccgctgcttacttttttgcaaccaaaaacatgtaacttgctcagatgcaaatagatcaaaattgaaaatctctaaaccttaactct 16365825  T
Q  130 tttattttatatcgttaaactaaaa-taagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    ||||||  ||||||| ||  ||||| ||||||||| |||||||||   | |||||||||||    
T  16365824 tttatt--atatcgtcaacttaaaaataagtaacgcgaattgtttgcacaaaacgacaatc 16365766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 23100014 - 23100056
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaat 229  Q
    |||||||||||| |||||||||||| |||||||||||||||||    
T  23100014 atcactttattatttggtaaacgatttggtacacttgcctaat 23100056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 1584581 - 1584537
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||    
T  1584581 atcactttattacttggtaaatgat-tggtacacttgcctaatccg 1584537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 6006148 - 6006091
Alignment:
Q  41 tcttaaccgctacttacttttctg-caacaaaacaagtaacttgctctgtttcaaaca 97  Q
    |||||||||||||||||||||||| || ||||||| ||||||| ||||||| ||||||    
T  6006148 tcttaaccgctacttacttttctgccaccaaaacaggtaacttactctgttgcaaaca 6006091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 10937639 - 10937598
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaa 228  Q
    ||||||||||||||||||||||||| || |||||||||||||    
T  10937639 atcactttattacttggtaaacgatttgatacacttgcctaa 10937598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 11221082 - 11221202
Alignment:
Q  68 caaaacaagtaacttgctctgtttcaaacaactaaaaattg-aaatcgctaacccttaactct-tttattttatatcgttaaactaaaataagtaacgtg 165  Q
    ||||||||||||||| ||||||| ||||||| ||||||||| || |   ||||||| |||||| ||| | || |||||||||   |||||||||||||      
T  11221082 caaaacaagtaactttctctgttgcaaacaaataaaaattgcaattttttaaccctcaactctctttttattttatcgttaa---aaaataagtaacgca 11221178  T
Q  166 aattgtttaggcgaaacgacaatc 189  Q
    |||||||||  |||||||||||||    
T  11221179 aattgtttacacgaaacgacaatc 11221202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 2350814 - 2350854
Alignment:
Q  192 tttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  2350814 tttattacttggtaaatgatttggtacacttgcctaatccg 2350854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 10584548 - 10584592
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatcc 231  Q
    |||||||||||||||| |||||||| ||||||||||| |||||||    
T  10584548 atcactttattacttgataaacgatttggtacacttgtctaatcc 10584592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 163
Target Start/End: Complemental strand, 15869820 - 15869682
Alignment:
Q  26 gggggaatcgaagagtcttaaccgctacttacttttctgcaac--aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaaccctt 123  Q
    |||||| || ||||||| |||||| |  |||||||| ||||||  |||||| |||||||  ||| || ||||||  ||||| ||| |||| | |||||||    
T  15869820 gggggattcaaagagtcctaaccgttgtttacttttatgcaaccaaaaacaggtaactttttctattgcaaacagataaaa-ttgcaatctcaaaccctt 15869722  T
Q  124 aactcttttattttatatcgttaaactaaaataagtaacg 163  Q
    | || |||||||||||||||| ||  ||||||||||||||    
T  15869721 atctattttattttatatcgtcaacttaaaataagtaacg 15869682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 1814152 - 1814109
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatc 230  Q
    |||||||||||||||||||||  || ||||||||||||||||||    
T  1814152 atcactttattacttggtaaataatttggtacacttgcctaatc 1814109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 5047450 - 5047489
Alignment:
Q  189 cactttattacttggtaaacgatctggtacacttgcctaa 228  Q
    ||||||||||||||||||| ||| ||||||||||||||||    
T  5047450 cactttattacttggtaaatgatttggtacacttgcctaa 5047489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 9574444 - 9574401
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatc 230  Q
    ||||||||||| ||||||||||||| | ||||||||||||||||    
T  9574444 atcactttattccttggtaaacgatttagtacacttgcctaatc 9574401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 23093345 - 23093306
Alignment:
Q  189 cactttattacttggtaaacgatctggtacacttgcctaa 228  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  23093345 cactttattacttagtaaacgatttggtacacttgcctaa 23093306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 5797545 - 5797503
Alignment:
Q  190 actttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||| |||| || |||||||||||||||||    
T  5797545 actttattacttggtaagcgatttgttacacttgcctaatccg 5797503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 7397231 - 7397189
Alignment:
Q  189 cactttattacttggtaaacgatctggtacacttgcctaatcc 231  Q
    ||||||||||||||||||||| | |||||||||| ||||||||    
T  7397231 cactttattacttggtaaacggtttggtacactttcctaatcc 7397189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 8054551 - 8054589
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcc 225  Q
    |||||||||||| |||||||||||| |||||||||||||    
T  8054551 atcactttattatttggtaaacgatttggtacacttgcc 8054589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 11803293 - 11803211
Alignment:
Q  27 ggggaatcgaagagtcttaaccgctacttacttttctgcaac-aaaacaagtaa-cttgctctgtttcaaacaactaaaaatt 107  Q
    ||||| ||||| | || ||||||||  |||||| |||||||| |||||| |||| ||||||||||| ||||||||||||||||    
T  11803293 ggggattcgaataatcctaaccgctggttacttctctgcaaccaaaacaggtaaacttgctctgttgcaaacaactaaaaatt 11803211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 16365739 - 16365697
Alignment:
Q  190 actttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||||||||||||||||| ||||||||||  ||||||||    
T  16365739 actttattacttggtaaacgatttggtacacttttctaatccg 16365697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 140321 - 140260
Alignment:
Q  46 accgctacttacttttctgcaac-aaaacaagtaacttgctctgtttcaaacaactaaaaat 106  Q
    ||||||||| || |||||||||| |||||| ||||||||||||||| ||||||  |||||||    
T  140321 accgctactaacatttctgcaactaaaacaggtaacttgctctgttgcaaacagataaaaat 140260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #52
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 1587718 - 1587673
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||| ||||| ||||||||| ||||||| ||||||||||||    
T  1587718 atcactttactacttagtaaacgatttggtacatttgcctaatccg 1587673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #53
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 3329548 - 3329632
Alignment:
Q  44 taaccgctacttacttttctgcaac--aaaacaagt-aacttgctctgtttcaaacaactaaaaattg-aaatcgctaaccctta 124  Q
    |||||||| ||||||||||||||||  ||||||||| |||||||| |||| ||||||  ||||||||| || || ||||||||||    
T  3329548 taaccgctgcttacttttctgcaaccaaaaacaagtaaacttgctatgttgcaaacagataaaaattgcaactctctaaccctta 3329632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #54
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 5530058 - 5530013
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||| ||||||||||||||||| || |||||||| |||||||||||    
T  5530058 atcattttattacttggtaaacaatttggtacacctgcctaatccg 5530013  T

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Target: chr7; HSP #55
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 9721001 - 9720964
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgc 224  Q
    |||||||||||| |||||||||||| ||||||||||||    
T  9721001 atcactttattatttggtaaacgatttggtacacttgc 9720964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #56
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 9731689 - 9731734
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||| |||||  |||||||| ||||||||||||||||||||    
T  9731689 atcactttactactttttaaacgatttggtacacttgcctaatccg 9731734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #57
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 12329719 - 12329674
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||| ||| |||||||||||||||| ||||||| ||||||||||||    
T  12329719 atcaatttcttacttggtaaacgatttggtacatttgcctaatccg 12329674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #58
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 14196036 - 14196077
Alignment:
Q  189 cactttattacttggtaaacgatctggtacacttgcctaatc 230  Q
    |||||||||| ||| |||||||| ||||||||||||||||||    
T  14196036 cactttattatttgataaacgatttggtacacttgcctaatc 14196077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #59
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 31492967 - 31492922
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||| ||||||||||| || ||||||||||| |||||    
T  31492967 atcactttattacctggtaaacgatttgatacacttgcctgatccg 31492922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #60
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 136
Target Start/End: Complemental strand, 31493144 - 31493042
Alignment:
Q  33 tcgaagagtcttaaccgctacttacttttctgcaac-aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttt 131  Q
    ||||||| || |||||| | ||||| ||||| |||| |||||||||||||  ||||||| ||||||  ||||||||| |  | |||||||| ||||||||    
T  31493144 tcgaagaatcctaaccgttgcttacatttctacaaccaaaacaagtaactgactctgttgcaaacagataaaaattgca--ctctaaccctcaactcttt 31493047  T
Q  132 tattt 136  Q
    |||||    
T  31493046 tattt 31493042  T

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Target: chr7; HSP #61
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 11221226 - 11221270
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatcc 231  Q
    |||| |||||||||| ||||||||| |||||||||||| ||||||    
T  11221226 atcaatttattacttagtaaacgatttggtacacttgcttaatcc 11221270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #62
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 14755193 - 14755237
Alignment:
Q  188 tcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||| |||||| |||||||| ||||||||||| ||||||||    
T  14755193 tcactttactacttgataaacgatttggtacacttgtctaatccg 14755237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #63
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 16058907 - 16058994
Alignment:
Q  27 ggggaatcgaagagtcttaaccgctacttacttttctgcaac--aaaacaagtaactt-gctctgtttcaaacaactaaaaattgaaa 111  Q
    ||||| ||||||| || |||| ||| |||||||| |||||||  ||||||||||| || |||||||| ||||||  ||||||||||||    
T  16058907 ggggattcgaagaatcctaacagctgcttactttactgcaaccaaaaacaagtaaatttgctctgttgcaaacagataaaaattgaaa 16058994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #64
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 18449278 - 18449238
Alignment:
Q  188 tcactttattacttggtaaacgatctggtacacttgcctaa 228  Q
    ||||||||||||||||||||| || || |||||||||||||    
T  18449278 tcactttattacttggtaaacaatttgatacacttgcctaa 18449238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #65
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 26134814 - 26134850
Alignment:
Q  192 tttattacttggtaaacgatctggtacacttgcctaa 228  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  26134814 tttattacttggtaaacgatttggtacacttgtctaa 26134850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 15 - 166
Target Start/End: Complemental strand, 39821 - 39669
Alignment:
Q  15 aaaatatatatgggggaatcgaagagtcttaaccgctacttacttttctgcaac-aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatc 113  Q
    |||||| ||| |||||| || ||||||| |||||||| |||||||||||||||| |||||| ||||||||||||||| ||||||  ||||||||| ||||    
T  39821 aaaataaataggggggattcaaagagtcataaccgctgcttacttttctgcaaccaaaacaggtaacttgctctgttgcaaacagataaaaattgcaatc 39722  T
Q  114 gctaacccttaactcttttattttatatcgttaaactaaaataagtaacgtga 166  Q
     ||||  |||| ||||||||||||||||||| ||  |||||||||||| ||||    
T  39721 tctaattcttatctcttttattttatatcgtcaacttaaaataagtaaagtga 39669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 39621 - 39576
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||||||||||||||||  || | ||||||||||||||||||    
T  39621 atcactttattacttggtaaataattttgtacacttgcctaatccg 39576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 168172 - 168310
Alignment:
Q  26 gggggaatcgaagagtcttaaccgctacttacttttctgcaac--aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaaccctt 123  Q
    |||||| || ||||||| |||||| |  || ||||||| ||||  |||||||||||||||||||||| ||||||  |||||||||||||| |||||||||    
T  168172 gggggattcaaagagtcctaaccgttgtttccttttctacaaccaaaaacaagtaacttgctctgttgcaaacagataaaaattgaaatctctaaccctt 168271  T
Q  124 aactcttttattttatatcgttaaactaaaataagtaac 162  Q
    |  |||||||||||||||||| ||  |||||||||||||    
T  168272 atgtcttttattttatatcgtcaacttaaaataagtaac 168310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 168360 - 168403
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatc 230  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  168360 atcactttattacttggtaaacgatttggtacacttgcctaatc 168403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 35773 - 35598
Alignment:
Q  16 aaatatatatgggggaatcgaagagtcttaaccgctacttacttttctgcaa-caaaacaagtaacttgctctgtttcaaacaactaaaaattg-aaatc 113  Q
    ||||| |||| ||||| | ||||| ||||||||||| ||||| ||||||||| ||||||| |||||||||| |||| || |||| ||||||||| |||||    
T  35773 aaataaatataggggatttgaagaatcttaaccgctgcttacctttctgcaaccaaaacaggtaacttgctttgttgcagacaaataaaaattgcaaatc 35674  T
Q  114 gctaaccc-ttaactcttttattttatatcgttaaac-taaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
     ||||||| |||||||||||||||  |||| | |||| |||||||||||| | ||||||||| | |||||||| ||||    
T  35673 tctaaccctttaactcttttattt--tatcatcaaacttaaaataagtaaggcgaattgtttggacgaaacgaaaatc 35598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 69 - 163
Target Start/End: Complemental strand, 55042 - 54948
Alignment:
Q  69 aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactcttttattttatatcgttaaactaaaataagtaacg 163  Q
    |||||| |||||||||| |||  ||||||| ||||||||| |||| |||||||||| || |||||||||||||||||||  ||||||||||||||    
T  55042 aaaacaggtaacttgctatgtcgcaaacaaataaaaattggaatctctaacccttatcttttttattttatatcgttaacttaaaataagtaacg 54948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 54897 - 54852
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||    
T  54897 atcactttattacttggtaaacgatttggtacactttcctaatccg 54852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0638 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 189
Target Start/End: Original strand, 702 - 861
Alignment:
Q  33 tcgaagagtcttaaccgctacttacttttctgcaac--aaaacaagt-aacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactct 129  Q
    ||||||| ||||||||||| ||||||||||||||||  |||||| || ||||| ||||||| ||||||  ||||||||| ||||  |    || ||| ||    
T  702 tcgaagaatcttaaccgcttcttacttttctgcaaccaaaaacaggtaaactttctctgttgcaaacagataaaaattgcaatcttt----ctaaaccct 797  T
Q  130 tttattttatatcgttaaact----aaaataagtaacgtgaattgtttaggcgaaacgacaatc 189  Q
    | | ||||||||||| |||||    ||||||||||||||| ||||||| | |||||||||||||    
T  798 tatcttttatatcgtcaaacttataaaaataagtaacgtggattgtttggacgaaacgacaatc 861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 78631 - 78589
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaat 229  Q
    |||| |||||||||||||||||||| |||||||||||||||||    
T  78631 atcagtttattacttggtaaacgatatggtacacttgcctaat 78589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 132
Target Start/End: Original strand, 89737 - 89835
Alignment:
Q  36 aagagtcttaaccgctacttacttttctgcaa-caaaacaagtaacttgctctgtttcaaacaactaaaaatt-gaaatcgctaacccttaactctttt 132  Q
    ||||||| |||||||| |||| |||||||||| ||||||| |||||||| || ||| ||||||  || |||||  ||||| ||||||||||||||||||    
T  89737 aagagtcctaaccgctgcttatttttctgcaaccaaaacaggtaacttgttcggttgcaaacagatagaaattaaaaatctctaacccttaactctttt 89835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 89917 - 89957
Alignment:
Q  189 cactttattacttggtaaacgatctggtacacttgcctaat 229  Q
    ||||||||||||||||||||||| || |||||||| |||||    
T  89917 cactttattacttggtaaacgatttgatacacttgtctaat 89957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0838 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0838
Description:

Target: scaffold0838; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 173
Target Start/End: Complemental strand, 2593 - 2447
Alignment:
Q  26 gggggaatcgaagagtcttaaccgctacttactttt-ctgcaacaaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaaccctta 124  Q
    |||||| | |||||||| ||||||||  |||||||| || |||| ||||| ||||||| ||||||| ||||||  ||||  ||  |||| |||||||||     
T  2593 gggggatttgaagagtcctaaccgctgtttactttttctacaacgaaacaggtaactttctctgttgcaaacagataaa--ttacaatctctaacccttc 2496  T
Q  125 actcttttattttatatcgttaaactaaaataagtaacgtgaattgttt 173  Q
    |||||||||||||| || || |||  ||||||| |||||  ||||||||    
T  2495 actcttttattttaaattgtcaaatcaaaataattaacgctaattgttt 2447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0832 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0832
Description:

Target: scaffold0832; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 173
Target Start/End: Complemental strand, 2624 - 2478
Alignment:
Q  26 gggggaatcgaagagtcttaaccgctacttactttt-ctgcaacaaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaaccctta 124  Q
    |||||| | |||||||| ||||||||  |||||||| || |||| ||||| ||||||| ||||||| ||||||  ||||  ||  |||| |||||||||     
T  2624 gggggatttgaagagtcctaaccgctgtttactttttctacaacgaaacaggtaactttctctgttgcaaacagataaa--ttacaatctctaacccttc 2527  T
Q  125 actcttttattttatatcgttaaactaaaataagtaacgtgaattgttt 173  Q
    |||||||||||||| || || |||  ||||||| |||||  ||||||||    
T  2526 actcttttattttaaattgtcaaatcaaaataattaacgctaattgttt 2478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 188
Target Start/End: Original strand, 35867 - 36032
Alignment:
Q  26 gggggaatcgaagagtcttaaccgctacttacttttctgcaac--aaaacaagtaacttgctctgtttcaaacaactaaaaattg-aaatcgctaaccc- 121  Q
    |||||| || |||| || |||||||| ||||||||||||||||  ||| || ||||||| || |||| |||| |  ||||||||| ||||| |||||||     
T  35867 gggggattctaagaatcctaaccgctgcttacttttctgcaaccaaaatcaggtaactttctttgttccaaatagataaaaattgcaaatctctaaccct 35966  T
Q  122 ttaactcttttattttatatcgttaaac-taaaataagtaacgtgaattgtttaggcgaaacgacaat 188  Q
    ||||||||| |||||  |||||| |||| |||||||||||||  ||||| ||| |  |||||||||||    
T  35967 ttaactcttatattt--tatcgtcaaacttaaaataagtaacacgaattatttggatgaaacgacaat 36032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 51160 - 51115
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||||||||||||||||| || |||| |||||||||||||||    
T  51160 atcactttattacttggtaaacaatttggttcacttgcctaatccg 51115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0957 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 3188 - 3145
Alignment:
Q  189 cactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||||||||||||||| || | ||||||||||||||||||    
T  3188 cactttattacttggtaaacaattttgtacacttgcctaatccg 3145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0671 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0671
Description:

Target: scaffold0671; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 655 - 572
Alignment:
Q  27 ggggaatcgaagagtcttaaccgctacttacttttctgcaa-caaaacaagtaactt-gctctgtttcaaacaactaaaaattg 108  Q
    ||||| ||||||| || |||||||| ||||||||||||||| ||||||| |||| || |||||||| ||||||  |||||||||    
T  655 ggggattcgaagaatcctaaccgctgcttacttttctgcaaccaaaacaggtaaattcgctctgttgcaaacagataaaaattg 572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 15530 - 15572
Alignment:
Q  190 actttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    |||||||||||||||||| ||| || |||||||||||||||||    
T  15530 actttattacttggtaaatgatttgatacacttgcctaatccg 15572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 21488 - 21406
Alignment:
Q  28 gggaatcgaagagtcttaaccgctacttacttttctgcaa-caaaacaagt-aacttgctctgtttcaaacaactaaaaattg 108  Q
    |||| ||||||| || ||| ||||||||||||||||| || ||||||| || ||||| ||||||| ||||||| |||||||||    
T  21488 gggattcgaagaatcctaatcgctacttacttttctgaaaccaaaacaggtaaacttcctctgttgcaaacaaataaaaattg 21406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 69949 - 69911
Alignment:
Q  188 tcactttattacttggtaaacgatctggtacacttgcct 226  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  69949 tcactttattacttggtaaatgatttggtacacttgcct 69911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 29942 - 29909
Alignment:
Q  189 cactttattacttggtaaacgatctggtacactt 222  Q
    ||||||||||||||||||||||| ||||||||||    
T  29942 cactttattacttggtaaacgatttggtacactt 29909  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 12146 - 12105
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaa 228  Q
    |||| ||||||||||||||||| || ||||||||||||||||    
T  12146 atcagtttattacttggtaaacaatttggtacacttgcctaa 12105  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 142
Target Start/End: Complemental strand, 114704 - 114596
Alignment:
Q  36 aagagtcttaaccgctacttacttttctgcaac--aaaacaagtaacttgctctgtttcaaacaactaaaaattgaaatcgctaacccttaactctttta 133  Q
    ||||||| |||||| |  || ||||||||||||  |||||| |||| ||| |||||| ||||||  ||||||||  |||| |||||| ||  ||||||||    
T  114704 aagagtcctaaccgttgtttccttttctgcaaccaaaaacaggtaatttggtctgttgcaaacagataaaaattacaatctctaaccattgtctctttta 114605  T
Q  134 ttttatatc 142  Q
    |||||||||    
T  114604 ttttatatc 114596  T

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Target: scaffold0001 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 69118 - 69074
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatccg 232  Q
    ||||||||||||||||||||  ||| ||||||||||||||||||||    
T  69118 atcactttattacttggtaat-gatttggtacacttgcctaatccg 69074  T

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Target: scaffold0001; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 81524 - 81480
Alignment:
Q  187 atcactttattacttggtaaacgatctggtacacttgcctaatcc 231  Q
    |||||||||||| |||||||||||| | ||| |||||||||||||    
T  81524 atcactttattatttggtaaacgatttcgtaaacttgcctaatcc 81480  T

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