View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19670_low_16 (Length: 238)

Name: NF19670_low_16
Description: NF19670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19670_low_16
NF19670_low_16
[»] chr4 (4 HSPs)
chr4 (21-238)||(48883444-48883660)
chr4 (21-238)||(48470260-48470477)
chr4 (21-238)||(48478622-48478839)
chr4 (21-238)||(48487088-48487308)
[»] chr7 (1 HSPs)
chr7 (85-238)||(38816834-38816993)


Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 48883444 - 48883660
Alignment:
Q  21 tgccttatcatggatttgcatggacacttgtgaagccagaagaaggtggtgttggtagaccaacttctggtcctgctattacaatggatggttcaatggg 120  Q
    ||||||||||||||| |||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48883444 tgccttatcatggatatgcatggacacttgtgaaaccaggtgaaggtggtgttggtagaccaacttctggtcctgctattacaatggatggttcaatggg 48883543  T
Q  121 ttataagtcgataacaaattacattagcggctctggtgatggagtagtttcatattataatgagaaatttgtggtgaattatttcactgttgcatctact 220  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  48883544 ttataagtcgataacaaattacattagcggctctgatgatggagtagtttcatattataatgagacatttgtggtgaattatttcactgttgcatctact 48883643  T
Q  221 tgggttaattttgatgat 238  Q
    |||| |||||||||||||    
T  48883644 tggg-taattttgatgat 48883660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 48470477 - 48470260
Alignment:
Q  21 tgccttatcatggatttgcatggacacttgtgaagccagaagaaggtggtgttggtagaccaacttctggtcctgctattacaatggatggttcaatggg 120  Q
    ||||||||||||||| |||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||      
T  48470477 tgccttatcatggatatgcatggacacttgtgaaaccaggtgaaggtggtgttggtagaccaacttctggtcctgcttttacaatggatggttcaatgtc 48470378  T
Q  121 ttataagtcgataacaaattacattagcggctctggtgatggagtagtttcatattataatgagaaatttgtggtgaattatttcactgttgcatctact 220  Q
    ||||||||  |||| || ||||||||| |||| |||||||||||||||||||  ||||||||| |  |||||||||||||||||||||||||||||||||    
T  48470377 ttataagtttataaaaagttacattagaggctttggtgatggagtagtttcacgttataatgacacttttgtggtgaattatttcactgttgcatctact 48470278  T
Q  221 tgggttaattttgatgat 238  Q
    ||||||||||||||||||    
T  48470277 tgggttaattttgatgat 48470260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 48478839 - 48478622
Alignment:
Q  21 tgccttatcatggatttgcatggacacttgtgaagccagaagaaggtggtgttggtagaccaacttctggtcctgctattacaatggatggttcaatggg 120  Q
    |||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  48478839 tgccttatcatggatttgcatggacacttgtgaaaccaggtgaaggtggtgttggtagaccaacttctggtcctgctattacaatggatggttcaatggc 48478740  T
Q  121 ttataagtcgataacaaattacattagcggctctggtgatggagtagtttcatattataatgagaaatttgtggtgaattatttcactgttgcatctact 220  Q
    ||||||||  |||| || |||||| || |||| |||||||||||||||||||  ||||||||| |  ||||||||||||||||||||||||| ||||||     
T  48478739 ttataagtttataaaaagttacatcagaggctttggtgatggagtagtttcacgttataatgacacttttgtggtgaattatttcactgttgaatctaca 48478640  T
Q  221 tgggttaattttgatgat 238  Q
    ||||||||||||||||||    
T  48478639 tgggttaattttgatgat 48478622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 48487308 - 48487088
Alignment:
Q  21 tgccttatcatggatttgcatggacacttgtgaagccagaagaaggtggtgttggtagaccaacttctggtcctgctattacaatggatggttcaatggg 120  Q
    ||||||||||||||||||| |||||||||||||| ||||  |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||     
T  48487308 tgccttatcatggatttgcttggacacttgtgaaaccaggtgaaggtggtgttggtaaaccaacttctggtcctgctattacaaaggatggttcaatggc 48487209  T
Q  121 ttataagtcgataacaaattacattagcggctctggtgatggagtagtttcatattataatgagaaatttgtggtgaattatttcactgttgcat---ct 217  Q
    |||||||| ||||| || ||| |||||  ||| |||||| ||||||||||||| ||||||||| |  ||||||||||||||||| ||||||||||   ||    
T  48487208 ttataagttgataaaaagttatattagaagctttggtgacggagtagtttcatgttataatgatacttttgtggtgaattattttactgttgcatccact 48487109  T
Q  218 acttgggttaattttgatgat 238  Q
    |||||||||||||||||||||    
T  48487108 acttgggttaattttgatgat 48487088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 85 - 238
Target Start/End: Original strand, 38816834 - 38816993
Alignment:
Q  85 ttctggtcctgctattacaatggatggttcaatgggttataagtcgataacaaattacattagcggctctggtgatggagtagtttcatattataatgag 184  Q
    ||||||||||||| ||||||||||||||||| ||| ||||||||  || | || |||||||||  |||||||||||||||||||||||| |||||||||     
T  38816834 ttctggtcctgcttttacaatggatggttcagtggcttataagtatatgaaaagttacattagaagctctggtgatggagtagtttcatgttataatgac 38816933  T
Q  185 aaatttgtggtgaattatttcactgttgcatc------tacttgggttaattttgatgat 238  Q
       |||||||||||||||||||||||||||||      ||| ||||||||||||||||||    
T  38816934 gcttttgtggtgaattatttcactgttgcatccactagtacatgggttaattttgatgat 38816993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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