View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19670_low_18 (Length: 216)

Name: NF19670_low_18
Description: NF19670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19670_low_18
NF19670_low_18
[»] chr5 (1 HSPs)
chr5 (42-73)||(28213552-28213583)
[»] chr4 (2 HSPs)
chr4 (42-73)||(12152283-12152314)
chr4 (40-73)||(4211680-4211713)
[»] chr2 (2 HSPs)
chr2 (42-73)||(29831968-29831999)
chr2 (41-73)||(38231610-38231642)
[»] chr8 (1 HSPs)
chr8 (2-35)||(37126054-37126087)


Alignment Details
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 73
Target Start/End: Complemental strand, 28213583 - 28213552
Alignment:
Q  42 tttttaaaaatcaaaagattttgcagagacta 73  Q
    ||||||||||||||||||||||||||||||||    
T  28213583 tttttaaaaatcaaaagattttgcagagacta 28213552  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 73
Target Start/End: Original strand, 12152283 - 12152314
Alignment:
Q  42 tttttaaaaatcaaaagattttgcagagacta 73  Q
    ||||||||||||||||||||||||||||||||    
T  12152283 tttttaaaaatcaaaagattttgcagagacta 12152314  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 73
Target Start/End: Complemental strand, 4211713 - 4211680
Alignment:
Q  40 catttttaaaaatcaaaagattttgcagagacta 73  Q
    |||||||||||||||||||||||||||| |||||    
T  4211713 catttttaaaaatcaaaagattttgcagggacta 4211680  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 73
Target Start/End: Complemental strand, 29831999 - 29831968
Alignment:
Q  42 tttttaaaaatcaaaagattttgcagagacta 73  Q
    ||||||||||||||||||||||||||||||||    
T  29831999 tttttaaaaatcaaaagattttgcagagacta 29831968  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 38231642 - 38231610
Alignment:
Q  41 atttttaaaaatcaaaagattttgcagagacta 73  Q
    ||||||||||||||||||||||||||| |||||    
T  38231642 atttttaaaaatcaaaagattttgcagggacta 38231610  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 37126087 - 37126054
Alignment:
Q  2 aaatatgtctcgttttgattttagtttttgtaat 35  Q
    ||||||||||||||||||||||||| ||||||||    
T  37126087 aaatatgtctcgttttgattttagtctttgtaat 37126054  T

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