View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19670_low_3 (Length: 536)

Name: NF19670_low_3
Description: NF19670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19670_low_3
NF19670_low_3
[»] chr3 (3 HSPs)
chr3 (18-518)||(31187727-31188227)
chr3 (328-393)||(25838080-25838145)
chr3 (329-378)||(43751792-43751841)
[»] chr5 (2 HSPs)
chr5 (18-169)||(24016097-24016251)
chr5 (327-379)||(28503271-28503323)
[»] chr7 (1 HSPs)
chr7 (330-384)||(3255158-3255212)
[»] chr6 (2 HSPs)
chr6 (328-378)||(20207190-20207240)
chr6 (328-378)||(22101213-22101263)
[»] chr2 (1 HSPs)
chr2 (329-378)||(10696380-10696429)
[»] chr1 (2 HSPs)
chr1 (329-370)||(434989-435030)
chr1 (327-371)||(7439097-7439141)


Alignment Details
Target: chr3 (Bit Score: 449; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 18 - 518
Target Start/End: Original strand, 31187727 - 31188227
Alignment:
Q  18 atgaaacaacaaataggggatcgtggattcttgaaggaatgttagtgccatatattcgttgatttggactgatttttgtattttactctattaattaaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31187727 atgaaacaacaaataggggatcgtggattcttgaaggaatgttagtgccatatattcgttgatttggactgatttttgtattttactctattaattaaaa 31187826  T
Q  118 gcgattaaattgggtgtccaaaacattcctgtttaagccaattgctactataatgatcaaataaatataagtatattttgccaaaacatgtactacactc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31187827 gcgattaaattgggtgtccaaaacattcctgtttaagccaattgctactataatgatcaaataaatataagtatattttgccaaaacatgtaccacactc 31187926  T
Q  218 ataattcgttagagttatggttttcaactaaattattaagactgcttctttttccatcctataaatttctcacacactttatgcagtttgaattatacat 317  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  31187927 ataattcgttagagttatggttttcaactaaattattaagacggtttctttttccatcctataaatttctcacacgctttatgcagtttggattatacat 31188026  T
Q  318 tacgaacaacataaaaacttcaaaaataggttgaaatattttagattatagaatccgaataaagcgcacgaaaaataatattttagattatagaatctga 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  31188027 tacgaacaacataaaaacttcaaaaataggttgaaatattttagattatagaatccgaataaagcgcacgaaaaacaatattttaaattatagaatctga 31188126  T
Q  418 ataaggtgcccgaaaaacctgtaaaatggaaaaagtaatgactaattattatttcccccttgattgtgtgttggcccaaacaaagggagttaaaatcctt 517  Q
    |||||| || ||||||||||||||||  |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31188127 ataaggcgcacgaaaaacctgtaaaacagaaaaaataatgactaattattatttcccccttgattgtttgttggcccaaacaaagggagttaaaatcctt 31188226  T
Q  518 t 518  Q
    |    
T  31188227 t 31188227  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 393
Target Start/End: Complemental strand, 25838145 - 25838080
Alignment:
Q  328 ataaaaacttcaaaaataggttgaaatattttagattatagaatccgaataaagcgcacgaaaaat 393  Q
    |||||||| ||||||| | ||||||||||||| |||| ||||||| |||||   ||||||||||||    
T  25838145 ataaaaacctcaaaaacatgttgaaatattttggattttagaatctgaataggacgcacgaaaaat 25838080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 378
Target Start/End: Complemental strand, 43751841 - 43751792
Alignment:
Q  329 taaaaacttcaaaaataggttgaaatattttagattatagaatccgaata 378  Q
    ||||| ||||||||| | ||| |||||||||||||| |||||||||||||    
T  43751841 taaaatcttcaaaaacacgttaaaatattttagattttagaatccgaata 43751792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 7e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 24016251 - 24016097
Alignment:
Q  18 atgaaacaacaaataggggatcgtggattcttgaaggaatg----ttagtgccatatattcgttgatttggactgatttttgtattttactctattaatt 113  Q
    |||||||||||||||||| || |||||||||||||||||||    | ||||||||||||||||||||||||||||| ||||| |||||| || |||||||    
T  24016251 atgaaacaacaaataggg-atagtggattcttgaaggaatgaatgtgagtgccatatattcgttgatttggactga-ttttgcattttattccattaatt 24016154  T
Q  114 aaaagcgattaaat-tgggtgtccaaaacattcctgtttaagccaattgctactata 169  Q
    |||| ||| |||||  |||||||||||||||| |||||||| |||||||||||||||    
T  24016153 aaaaacgagtaaatgggggtgtccaaaacatttctgtttaacccaattgctactata 24016097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 379
Target Start/End: Original strand, 28503271 - 28503323
Alignment:
Q  327 cataaaaacttcaaaaataggttgaaatattttagattatagaatccgaataa 379  Q
    ||||||||| || |||||| |||||||||||| ||||| |||||| |||||||    
T  28503271 cataaaaacctccaaaatacgttgaaatatttcagattttagaattcgaataa 28503323  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 384
Target Start/End: Original strand, 3255158 - 3255212
Alignment:
Q  330 aaaaacttcaaaaataggttgaaatattttagattatagaatccgaataaagcgc 384  Q
    |||| |||||||||||  ||||||||||||||||| ||||||||||||| |||||    
T  3255158 aaaaccttcaaaaatatattgaaatattttagattttagaatccgaatagagcgc 3255212  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 378
Target Start/End: Original strand, 20207190 - 20207240
Alignment:
Q  328 ataaaaacttcaaaaataggttgaaatattttagattatagaatccgaata 378  Q
    |||||||||||||||| | |||||||||||| ||||| ||||||| |||||    
T  20207190 ataaaaacttcaaaaacacgttgaaatatttcagattttagaatctgaata 20207240  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 378
Target Start/End: Original strand, 22101213 - 22101263
Alignment:
Q  328 ataaaaacttcaaaaataggttgaaatattttagattatagaatccgaata 378  Q
    |||||||||||||||| | |||||||||||| ||||| ||||||| |||||    
T  22101213 ataaaaacttcaaaaacacgttgaaatatttcagattttagaatctgaata 22101263  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 378
Target Start/End: Original strand, 10696380 - 10696429
Alignment:
Q  329 taaaaacttcaaaaataggttgaaatattttagattatagaatccgaata 378  Q
    ||||| ||||||||||| ||||||||||||| |||| |||||| ||||||    
T  10696380 taaaaccttcaaaaatacgttgaaatattttggattttagaattcgaata 10696429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 370
Target Start/End: Original strand, 434989 - 435030
Alignment:
Q  329 taaaaacttcaaaaataggttgaaatattttagattatagaa 370  Q
    ||||||||||||||| | |||||||||||||||||| |||||    
T  434989 taaaaacttcaaaaacatgttgaaatattttagattttagaa 435030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 7439097 - 7439141
Alignment:
Q  327 cataaaaacttcaaaaataggttgaaatattttagattatagaat 371  Q
    ||||||| ||||||||| | |||||||||||||||||| ||||||    
T  7439097 cataaaaccttcaaaaacacgttgaaatattttagattttagaat 7439141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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