View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19670_low_5 (Length: 449)
Name: NF19670_low_5
Description: NF19670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19670_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 32283485 - 32283056
Alignment:
| Q |
1 |
tttcattatgtattcgacaaatggaaaattcgcaaaaagatgcttttgcttctttcttcttgatgcatgatgtaagaagtaatgcatttcctatatagcc |
100 |
Q |
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| T |
32283485 |
tttcattatgtattcgacaaatggaaaattcgcaaagagatgcttttgcttctttcttcttgatgcatgatgtaagaagtaatgcatttcctatatagcc |
32283386 |
T |
|
| Q |
101 |
atgcaatggtcccctcgattacacaatgcacccatttttattttaaattgttgttgcagttaccttgaagatctttataacgtggaaaacgagtaaaaat |
200 |
Q |
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| T |
32283385 |
atgcaatggcccccgcgattacacaatgcacccttttttattttaaattgttgttgcagttaccttgaagatctttataacgtggaaaacgagtaaaaat |
32283286 |
T |
|
| Q |
201 |
gcgactgatgcaagatattgaccataagaagatagcataatatgatacacataaattcattaccttttacgtgaaaactacaaaacctagacatagaatt |
300 |
Q |
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| T |
32283285 |
gcgactgatgcaagatattgaccataagaagatagcataatatgatacacataaattcattactttttacgtgaaaactacaaaacctagacatagaatt |
32283186 |
T |
|
| Q |
301 |
attgtccgaatggtgaaccgtggtcccaac-aaaatgacatttaaccttgaacagttgtaactacatttatgttatttttcatgtgagaattctttaacc |
399 |
Q |
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| T |
32283185 |
attgtccgaatggtgaaccgtggtcccaacaaaaatgacatttaaccttgtaatgttgtaactacatttatgttatttttcatgtgagaattctttgacc |
32283086 |
T |
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| Q |
400 |
aatttcaagtacataaacattgaccgtggtt |
430 |
Q |
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| T |
32283085 |
aatttcaagtacat-aacattgaccgtggtt |
32283056 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 125
Target Start/End: Original strand, 25785800 - 25785891
Alignment:
| Q |
38 |
agatgcttttgcttctttcttcttgatgc---atgatgtaagaagtaatgcatttcctatatagccatgc-aatggtcccctcgattacaca |
125 |
Q |
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|||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||| | ||||||||| || |||||||||| ||||||| |
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| T |
25785800 |
agatgctttttcttctttcttcttgatgcttgatgatgtatgaagtaatgcacttcctctgtagccatgcaaacggtcccctcgtttacaca |
25785891 |
T |
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