View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19670_low_6 (Length: 432)
Name: NF19670_low_6
Description: NF19670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19670_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 38 - 193
Target Start/End: Original strand, 175643 - 175798
Alignment:
| Q |
38 |
gaatttgaagataattgaagaggaagaaggggtgtttgtgttcgttgttcccaagtgtttggaggaagccatggatcgtgtaacttcaaattctgtaaca |
137 |
Q |
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| T |
175643 |
gaatttgaagataattgaagaggaagaaggggtgttggtgttcgttgttcccaagtgtttggaggaagccatggatcgtgtaacttcaaattctgtaaca |
175742 |
T |
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| Q |
138 |
acgaagcactcatttcccattccatatttcagtaaaacccgcctcacgctcaattt |
193 |
Q |
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| T |
175743 |
acgaagcactcatttcccattccatatttcagtaaaacccgcctcacgctcaattt |
175798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 235 - 419
Target Start/End: Original strand, 175794 - 175973
Alignment:
| Q |
235 |
aatttgcaagaacaactttactttactccatgtcactcactgggttcttcttctcttcacaacattttttttgaatttagaatcaagatacattaatcct |
334 |
Q |
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| T |
175794 |
aatttgcaagaacaactttactttactccatgtcactcactgggttcttcttctcttcacaacatttttttagaatttagaatcaaaatacattaatcct |
175893 |
T |
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| Q |
335 |
tcgattataaagtcnnnnnnnnnnnnnnnnagagatttgtatattaacaaaactttgaactaattaactttattttccgatatat |
419 |
Q |
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| T |
175894 |
tcgattataaagtc-----agtttttttttagagatttgtatattaacaaaactttgaactaattaactttattttcctatatat |
175973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 175588 - 175633
Alignment:
| Q |
1 |
ttgaaaattagtacttacagagagagtggtttgatttgaatttgaa |
46 |
Q |
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| T |
175588 |
ttgaaaatgagtacttacagagagagtggtttgatttgaatttgaa |
175633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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