View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19670_low_8 (Length: 316)
Name: NF19670_low_8
Description: NF19670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19670_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 9 - 314
Target Start/End: Complemental strand, 36918860 - 36918555
Alignment:
| Q |
9 |
agcacagataacttaattgacctatcacaccgcacaccaaatctctcgaaatagcagatgcaaatccataaaggtattccattagtttaatgcgaattct |
108 |
Q |
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| T |
36918860 |
agcacggataacttaattgacctatcacaccgcacaccaaatctctcgaaatagcagatgcaaatccataaaggtattccattagtttaatgcgacttct |
36918761 |
T |
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| Q |
109 |
tacttggcctaatgaaaagagcgacaagcatgttataattattgattataaatgctactgctccatatggtccgtattatatttaaagatatgatgacaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36918760 |
tacttggcctaatgaaaagagcgacaagcatgttataattatggattagaaatgctactgctccatatggtccgtattatatttaaagatatgataacaa |
36918661 |
T |
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| Q |
209 |
ataatcaaggtatggattaattctctttttcttcttttgaagttaagggacccacttacatctcaataaagttaaggaaacaattgttaaaaactgtgtc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36918660 |
ataatcaaggtatggattaattctctttttcttcttttgaagttaagggacccacttacatctcaataaagttaaggaaacaattgttaaaaactgtgtc |
36918561 |
T |
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| Q |
309 |
agatta |
314 |
Q |
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|||||| |
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| T |
36918560 |
agatta |
36918555 |
T |
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