View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19671_high_1 (Length: 394)
Name: NF19671_high_1
Description: NF19671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19671_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 371
Target Start/End: Original strand, 4339887 - 4340240
Alignment:
| Q |
18 |
gaaacaaccatgtcgagtagtaattgctatatcaagattcaggaattactaaactaaaattgcagaagaccatgtttttataatgaccagtgttgtctaa |
117 |
Q |
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| T |
4339887 |
gaaacaaccatgtcgagtagtaattgctatatcaagattcaggaattactaaactaaaattgcagaagaccatgtttttataatgaccagtgttgtctaa |
4339986 |
T |
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| Q |
118 |
tagtagtgctatagcgtagcggaatttgaagaaaccactattttcaggatccgtgatcgataacaccaatgatcaccggggcttaatattttgcgagcct |
217 |
Q |
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| T |
4339987 |
tagtagtgctatagcgtagcggaatttgaagaaaccactattttcaggatccgtgatcgataacaccaatgatcaccggggcttaatattttgcgagcct |
4340086 |
T |
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| Q |
218 |
gtaagatcttcataagttttacaactgaatannnnnnncatatccatgaagaactcacttttagtcaaacataatgataatgctgacaggaatgttcact |
317 |
Q |
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| T |
4340087 |
gtaagatcttcataagttttacaactgaatatttttttcatatcaatgaagaactcacttgtagtcaaacgtaatgataatgctgacaggaatgttcact |
4340186 |
T |
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| Q |
318 |
ctgccatcttgatatgttgatacatgcagtcacattctcacttgtgtatttcta |
371 |
Q |
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| T |
4340187 |
ctgccatcttgatatgttgatacatgcagtcacattctcacttgtgtatttcta |
4340240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 159
Target Start/End: Original strand, 19778931 - 19778965
Alignment:
| Q |
125 |
gctatagcgtagcggaatttgaagaaaccactatt |
159 |
Q |
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| T |
19778931 |
gctatagcgtagcggaatttggagaaaccactatt |
19778965 |
T |
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