View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19671_high_2 (Length: 296)

Name: NF19671_high_2

Description: NF19671

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19671_high_2

[»] chr8 (7 HSPs)

Alignment Details

Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 7)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 236; E-Value: 1e-130

Query Start/End: Original strand, 18 - 296

Target Start/End: Complemental strand, 1277419 - 1277131

Alignment:

Q	18	gatatagccattgggacttcagctgcaccaactcttctaccaccctatttcttttggaatcgtagaaggccattcaatttagttgatggaggtatagctg	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	1277419	gatatagccattgggacttcagctgcaccaactcttctaccaccctatttcttttggaatcgtagaaggccattcaatttagttgatggaggtatagctg	1277320	T

Q	118	caggcagcccggtaagtgtatttaatatat----cattactcat--gttacatatgatatggttgcacattaatgttctataaaaattgtatg----taa	207	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|
T	1277319	caggcagcccggtaagtgtatttaatatatatatcattagtcatatgttacatatgatatggttgcacattaatgttctataaaaattgtatgcatgtaa	1277220	T

Q	208	ttcaggcattggttgcagtaagtgaagtgatgcaacaattgaatgagaaaaatcctaatttcattcctgtgaatccaaacgaacctacc	296	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	1277219	ttcaggcattggttgcagtaagtgaagtgatgcaacaattgaatgagaagaatcctaatttcattcctgtgaatccaaacgaacctacc	1277131	T

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Target: chr8; HSP #2

Raw Score: 44; E-Value: 4e-16

Query Start/End: Original strand, 18 - 65

Target Start/End: Complemental strand, 1196789 - 1196742

Alignment:

Q	18	gatatagccattgggacttcagctgcaccaactcttctaccaccctat	65	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	1196789	gatatagccattgggacttcagctgcaccaactcttctaccagcctat	1196742	T

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Target: chr8; HSP #3

Raw Score: 44; E-Value: 4e-16

Query Start/End: Original strand, 208 - 279

Target Start/End: Complemental strand, 1224395 - 1224324

Alignment:

Q	208	ttcaggcattggttgcagtaagtgaagtgatgcaacaattgaatgagaaaaatcctaatttcattcctgtga	279	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	1224395	ttcaggcattggttgcggtgagtgaagtgatacaagaattgaatgagaagaattccaatttcattcctgtga	1224324	T

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Target: chr8; HSP #4

Raw Score: 41; E-Value: 0.00000000000003

Query Start/End: Original strand, 220 - 296

Target Start/End: Complemental strand, 1196375 - 1196299

Alignment:

Q	220	ttgcagtaagtgaagtgatgcaacaattgaatgagaaaaatcctaatttcattcctgtgaatccaaacgaacctacc	296	Q
		\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	1196375	ttgcagtgaatgaagtgatgcaagaattggaggagaaaaattatgatttcatacctgtgaatccaaacgaacctacc	1196299	T

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Target: chr8; HSP #5

Raw Score: 34; E-Value: 0.0000000004

Query Start/End: Original strand, 14 - 71

Target Start/End: Original strand, 1300254 - 1300311

Alignment:

Q	14	atcagatatagccattgggacttcagctgcaccaactcttctaccaccctatttcttt	71	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	1300254	atcagatatatgcattggaacttcagctgcaccaacttatctaccaccctattacttt	1300311	T

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Target: chr8; HSP #6

Raw Score: 32; E-Value: 0.000000006

Query Start/End: Original strand, 18 - 49

Target Start/End: Complemental strand, 1242995 - 1242964

Alignment:

Q	18	gatatagccattgggacttcagctgcaccaac	49	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	1242995	gatatagccattgggacttcagctgcaccaac	1242964	T

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Target: chr8; HSP #7

Raw Score: 32; E-Value: 0.000000006

Query Start/End: Original strand, 18 - 49

Target Start/End: Complemental strand, 1253694 - 1253663

Alignment:

Q	18	gatatagccattgggacttcagctgcaccaac	49	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	1253694	gatatagccattgggacttcagctgcaccaac	1253663	T

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