View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19672_low_1 (Length: 406)

Name: NF19672_low_1
Description: NF19672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19672_low_1
NF19672_low_1
[»] chr5 (15 HSPs)
chr5 (16-402)||(41286200-41286591)
chr5 (171-330)||(41316351-41316510)
chr5 (171-340)||(31188371-31188540)
chr5 (174-326)||(41328321-41328473)
chr5 (171-329)||(41310611-41310769)
chr5 (171-329)||(41324420-41324578)
chr5 (172-326)||(41332332-41332486)
chr5 (171-276)||(31225273-31225378)
chr5 (215-323)||(41337304-41337412)
chr5 (171-264)||(31178402-31178495)
chr5 (171-329)||(41366511-41366666)
chr5 (32-136)||(41337089-41337193)
chr5 (93-169)||(31225163-31225239)
chr5 (100-169)||(41369738-41369807)
chr5 (96-169)||(41324313-41324386)
[»] chr4 (2 HSPs)
chr4 (217-329)||(17249070-17249182)
chr4 (19-132)||(17249299-17249412)


Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 16 - 402
Target Start/End: Original strand, 41286200 - 41286591
Alignment:
Q  16 aacggcgcgtgcaacttttgggaaaaagaacatacaccaagaagcattcaaattagcaatggaggaagcattgagcctgatgggaggattttgcattatt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  41286200 aacggcgcgtgcaacttttgggaaaaagaacatacaccaagaagcattcaaattagcaatggaggaagcattgagcctgatgggaggattttgcattgtt 41286299  T
Q  116 gatttgtatccttctattaaatttctacgatgggtgagcagggcaaa-----gaccaaacttgcaagacatcattgatgatcataaaagaagtcacatgg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||| |||||||||||||||||||||||||||||||||||    
T  41286300 gatttgtatccttctattaaatttctacgatgggtgagcagggcaaattaaagaccaaacttgccagacatcattgatgatcataaaagaagtcacatgg 41286399  T
Q  211 aagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagcactcacaacatcccttgactgatgataatttaaaagcagt 310  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  41286400 aagaaagcaaagatgaagatctaattgatgttcttctcaagattcaacaggaaagtgagcactcataacatcccttgactgatgataatttaaaagcagt 41286499  T
Q  311 catccaggttagtctacaactaaccatgttaataattttagggttaattatgtttttgatcccctaaatatacatactattgattttagtcc 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41286500 catccaggttagtctacaactaaccatgttaataattttagggttaattatgcttttgatcccctaaatatacatactattgattttagtcc 41286591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 171 - 330
Target Start/End: Original strand, 41316351 - 41316510
Alignment:
Q  171 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagc 270  Q
    |||||||||||||| || ||||| ||||| | ||||| |||||||||||| ||||||||||||||  ||||||||||||||||||||||||||| | | |    
T  41316351 ttgcaagacatcatcgacgatcacaaaagcattcacaaggaagaaagcaatgatgaagatctagtagatgttcttctcaagattcaacaggaaaattatc 41316450  T
Q  271 actcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaac 330  Q
    ||||||||||||| || |||||||| ||| ||||| || ||||||||||||||| |||||    
T  41316451 actcacaacatcctttaactgatgacaatataaaatcaatcatccaggttagtccacaac 41316510  T

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Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 171 - 340
Target Start/End: Complemental strand, 31188540 - 31188371
Alignment:
Q  171 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagc 270  Q
    |||||||| ||||| | |||||||||||  | ||||| |||||||||||| ||||||||||||||| ||  ||||||||||||||||||||||| ||| |    
T  31188540 ttgcaagatatcatcgttgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatactcttctcaagattcaacaggaaaatgatc 31188441  T
Q  271 actcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaactaaccatgtt 340  Q
    |||||||  |||| || |||||| | ||| | |||||| |||| | |||| ||||||||| || ||||||    
T  31188440 actcacataatccattaactgataacaatatgaaagcaatcattctggttcgtctacaaccaaacatgtt 31188371  T

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Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 174 - 326
Target Start/End: Original strand, 41328321 - 41328473
Alignment:
Q  174 caagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagcact 273  Q
    ||||||||||| || ||||| | ||| | ||||| ||||| |||||| ||||||||||||||  ||||||||||||||||||||||||||| | | ||||    
T  41328321 caagacatcatcgacgatcacagaagtattcacaaggaagcaagcaatgatgaagatctagtagatgttcttctcaagattcaacaggaaaattatcact 41328420  T
Q  274 cacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtcta 326  Q
    || ||||||| || || ||||| ||| | ||| || |||||||||||||||||    
T  41328421 cagaacatcctttaaccgatgacaatatgaaatcaatcatccaggttagtcta 41328473  T

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Target: chr5; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 171 - 329
Target Start/End: Original strand, 41310611 - 41310769
Alignment:
Q  171 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagc 270  Q
    |||||||||||||| || ||||| ||||| | || || |||||| ||||| ||||||||||||||  ||||||||||||||||| ||||||||| | | |    
T  41310611 ttgcaagacatcatcgacgatcacaaaagcattcgcaaggaagatagcaatgatgaagatctagtagatgttcttctcaagattaaacaggaaaattatc 41310710  T
Q  271 actcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaa 329  Q
    ||||| ||||||| || || ||||| ||| | ||| || |||||||||| |||||||||    
T  41310711 actcagaacatcctttaacggatgacaatatgaaatcaatcatccaggtaagtctacaa 41310769  T

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Target: chr5; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 171 - 329
Target Start/End: Original strand, 41324420 - 41324578
Alignment:
Q  171 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagc 270  Q
    ||||||||||| || || ||||| ||||| | ||||| |||||| ||||| || ||| |||||||  ||||||||||||||||||||||||||| | | |    
T  41324420 ttgcaagacattatcgacgatcacaaaagcattcacaaggaagatagcaatgaagaatatctagtagatgttcttctcaagattcaacaggaaaattatc 41324519  T
Q  271 actcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaa 329  Q
    ||||||||||||| || || ||||| ||| ||||  || ||||||||||||||| ||||    
T  41324520 actcacaacatcctttaaccgatgacaatataaagtcaatcatccaggttagtcaacaa 41324578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 172 - 326
Target Start/End: Original strand, 41332332 - 41332486
Alignment:
Q  172 tgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagca 271  Q
    ||||||||||||| || ||||| | ||| | ||||| ||||| |||||| ||||||||||||||  ||||||||||||||||||||||||||| | |  |    
T  41332332 tgcaagacatcatcgacgatcacagaagcattcacaaggaagcaagcaacgatgaagatctagtagatgttcttctcaagattcaacaggaaaattatta 41332431  T
Q  272 ctcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtcta 326  Q
    |||| ||||||| || || ||||| ||| | ||| || |||||||||||||||||    
T  41332432 ctcagaacatcctttaaccgatgacaatatgaaatcaatcatccaggttagtcta 41332486  T

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Target: chr5; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 171 - 276
Target Start/End: Original strand, 31225273 - 31225378
Alignment:
Q  171 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagc 270  Q
    |||||||| ||||| |||||||||||||  | ||||| |||||||||||| ||||||||||||||| ||  |||||||||||| |||||||||| |||||    
T  31225273 ttgcaagatatcatcgatgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatactcttctcaagatacaacaggaaaatgagc 31225372  T
Q  271 actcac 276  Q
    ||||||    
T  31225373 actcac 31225378  T

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Target: chr5; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 215 - 323
Target Start/End: Original strand, 41337304 - 41337412
Alignment:
Q  215 aagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagcactcacaacatcccttgactgatgataatttaaaagcagtcatc 314  Q
    |||||| |||||||| |||||| |||||||||||||| ||||||| |||| ||  ||||||||||| |||||||||||||| ||| ||||| |||||||     
T  41337304 aagcaaggatgaagacctagttgatgttcttctcaaggttcaacatgaaaatgttcactcacaacaacccttgactgatgaaaatataaaatcagtcatt 41337403  T
Q  315 caggttagt 323  Q
    |||||||||    
T  41337404 caggttagt 41337412  T

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Target: chr5; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 171 - 264
Target Start/End: Complemental strand, 31178495 - 31178402
Alignment:
Q  171 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaa 264  Q
    |||||||| ||| | |||||||||||||  | ||||| |||||||||||| ||||||||||||||| |||  ||| ||||||||||||||||||    
T  31178495 ttgcaagatatcgtcgatgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatgcacttatcaagattcaacaggaaa 31178402  T

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Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 171 - 329
Target Start/End: Original strand, 41366511 - 41366666
Alignment:
Q  171 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagc 270  Q
    |||||||| ||||| |||||||| ||||| ||||||| | |||  || ||  |||| ||||||||  |||||||||||||||||||||  | ||   | |    
T  41366511 ttgcaagagatcatcgatgatcacaaaagtagtcacaagaaagctaggaagaatgatgatctagtagatgttcttctcaagattcaacgtgtaa---atc 41366607  T
Q  271 actcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaa 329  Q
    ||||||||||||||||||| || || ||| ||||| | |||||||||||||||| ||||    
T  41366608 actcacaacatcccttgaccgacgacaatataaaatcggtcatccaggttagtcaacaa 41366666  T

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Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 41337089 - 41337193
Alignment:
Q  32 tttgggaaaaagaacatacaccaagaagcattcaaattagcaatggaggaagcattgagcctgatgggaggattttgcattattgatttgtatccttcta 131  Q
    |||||||||||||||| ||||||| ||   ||||||| | |||| |||||||||||| ||||  |||||| |||||| |||  ||| |||||||||||||    
T  41337089 tttgggaaaaagaacagacaccaacaattgttcaaatcaacaatagaggaagcattgggcctattgggagaattttgtattgctgacttgtatccttcta 41337188  T
Q  132 ttaaa 136  Q
    |||||    
T  41337189 ttaaa 41337193  T

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Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 31225163 - 31225239
Alignment:
Q  93 tgatgggaggattttgcattattgatttgtatccttctattaaatttctacgatgggtgagcagggcaaagaccaaa 169  Q
    |||||||||||||||| ||| ||||| ||||||||||||| ||| | || | ||||||||| ||||| |||||||||    
T  31225163 tgatgggaggattttgtattgttgatgtgtatccttctataaaaatgcttcaatgggtgagtagggcgaagaccaaa 31225239  T

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Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 41369738 - 41369807
Alignment:
Q  100 aggattttgcattattgatttgtatccttctattaaatttctacgatgggtgagcagggcaaagaccaaa 169  Q
    |||||||||||||  |||||||||||||||||||||| | || | | |||| || |||||||||||||||    
T  41369738 aggattttgcattgctgatttgtatccttctattaaaatacttcaaagggtaagtagggcaaagaccaaa 41369807  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 169
Target Start/End: Original strand, 41324313 - 41324386
Alignment:
Q  96 tgggaggattttgcattattgatttgtatccttctattaaatttctacgatgggtgagcagggcaaagaccaaa 169  Q
    |||||||  |||| ||| ||||||||||||||||||||||||| || | ||| ||||| ||||| ||| |||||    
T  41324313 tgggaggcatttgtattgttgatttgtatccttctattaaattgcttcaatgcgtgagtagggcgaaggccaaa 41324386  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 217 - 329
Target Start/End: Complemental strand, 17249182 - 17249070
Alignment:
Q  217 gcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagcactcacaacatcccttgactgatgataatttaaaagcagtcatcca 316  Q
    |||| ||||||||||||||| ||| |||| ||||||||||||| ||||||||  || ||||| || | ||||||||||| ||| ||||| || |||||||    
T  17249182 gcaaggatgaagatctagttgatgctcttatcaagattcaacaagaaagtgattacccacaaaattcattgactgatgacaatataaaatcaatcatcca 17249083  T
Q  317 ggttagtctacaa 329  Q
    |||||||||||||    
T  17249082 ggttagtctacaa 17249070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 17249412 - 17249299
Alignment:
Q  19 ggcgcgtgcaacttttgggaaaaagaacatacaccaagaagcattcaaattagcaatggaggaagcattgagcctgatgggaggattttgcattattgat 118  Q
    |||||| ||| |||| ||||||| ||||| ||||||| |||  ||||||| |||||| ||||||  | ||||  || ||||||||||||| ||| |||||    
T  17249412 ggcgcgagcagctttcgggaaaaggaacaaacaccaacaagtgttcaaatcagcaatagaggaaatagtgagtttgttgggaggattttgtattgttgat 17249313  T
Q  119 ttgtatccttctat 132  Q
    ||||||||||||||    
T  17249312 ttgtatccttctat 17249299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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