View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19673_high_1 (Length: 711)
Name: NF19673_high_1
Description: NF19673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19673_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 20 - 388
Target Start/End: Complemental strand, 28789406 - 28789036
Alignment:
| Q |
20 |
ctccaggtttattcctctcaagtgaagactctcatcaatgccctccttctatatttcaatgcaaatttttgcttgttttacttgaactatttaattaatt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28789406 |
ctccaggtttattcctctcaagtgaagactctcatcaatgccctccttctacatttcaatgcaaatttttgcttgttttacttgaactatttaattaatt |
28789307 |
T |
|
| Q |
120 |
catttctatttgttaccgttatcaaatttagggatatcagtgaactaaaactttgggtttaaattgtctattgatggtttttggagtttttgtttgatta |
219 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28789306 |
catttctatttgttactgttatcaaatttagggatatcagtgaactaaaactttgggtttaaattgtctattgatgctttttggagtttttgtttgatta |
28789207 |
T |
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| Q |
220 |
aatttatatgcttgtccgtcctcaaattttgaccaatcaatcaatttttctttaatcgagatagctagaactacagagtgttgatgtgtgacgttaacat |
319 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28789206 |
aatttatatgcttctccgtcctcaaattttgaccaatcaatcaatttttctttaatcgagatagctagaactatagagtgttgatgtgtgacgttaacat |
28789107 |
T |
|
| Q |
320 |
gtgacgtggagtt--aagtcagcttccatgtgacattaaacaagtgacgtgaagttacaagtaaacttcca |
388 |
Q |
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| T |
28789106 |
gtgtcgtggagttccaagtcagcttccatgtgacattaaacaagtgacgtgaagttacaagtaaacttcca |
28789036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 486 - 703
Target Start/End: Complemental strand, 28788953 - 28788736
Alignment:
| Q |
486 |
aataattgtgttcaaatgaaacaaattcgtcatttcagttatataacttactatcacatcgatccttgcggaatctagactaatatcaaaccaatctttt |
585 |
Q |
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| T |
28788953 |
aataattgtgtccaaatgaaacaaattcgtcatttcagttatataacttactatcacatcgatccttgcagaatctagattaatatcaaaccaatctttt |
28788854 |
T |
|
| Q |
586 |
gggatgaccttgaatgagtcatcattgatacaaaataaactcagctagggtcataaatatataaccaacaagttccataactttaaaatatctaaaaaac |
685 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
28788853 |
gggatgaccttaaatgagtcatcattgatacaaaataaactcagctagggtcataaatatataaccagcaagttccataacttttaaatatctaaaaaac |
28788754 |
T |
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| Q |
686 |
aatgttgtaatattcttc |
703 |
Q |
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| T |
28788753 |
aatgttgtaatattcttc |
28788736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 562 - 629
Target Start/End: Complemental strand, 5821810 - 5821743
Alignment:
| Q |
562 |
agactaatatcaaaccaatcttttgggatgaccttgaatgagtcatcattgatacaaaataaactcag |
629 |
Q |
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||||||||||||||| | || |||| ||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
5821810 |
agactaatatcaaacgactcctttgagatgaccttaaatgagtcgtcattgatacaaaataaactcag |
5821743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 31248007 - 31248198
Alignment:
| Q |
20 |
ctccaggtttattcctctcaagtgaagactctcatcaatgccctccttctatatttcaatgcaaatttttgcttgttttacttgaactatttaattaatt |
119 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| |||||| ||||| ||| |||||||| |||||||||||||||| ||||||||||| | | |
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| T |
31248007 |
ctccaggtttattcctctcaagtgaagatcgtcatcgatgcccc---tctatcttttaatgcaaacttttgcttgttttactggaactatttaaatgctc |
31248103 |
T |
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| Q |
120 |
catttctatttgttaccgttatcaaatttagggatatcagtgaactaaaactttgggtttaaattgtctattgat--ggtttttggagtttttgttt |
214 |
Q |
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| T |
31248104 |
catttctatttgatattgttatgacaat--aggatatcagtgaactaaagttttgggtttaaattgtctatttatgagctttttggagtttttgttt |
31248198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 524 - 615
Target Start/End: Original strand, 34684557 - 34684648
Alignment:
| Q |
524 |
ttatataacttactatcacatcgatccttgcggaatctagactaatatcaaaccaatcttttgggatgaccttgaatgagtcatcattgata |
615 |
Q |
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|||||||||||||||||||||||| | |||| ||| |||| |||||||||||||||| ||||| ||||||| ||||| |||||||||||| |
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| T |
34684557 |
ttatataacttactatcacatcgaccattgcataatttagattaatatcaaaccaatcctttggaatgacctcaaatgactcatcattgata |
34684648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 486 - 554
Target Start/End: Complemental strand, 8839991 - 8839925
Alignment:
| Q |
486 |
aataattgtgttcaaatgaaacaaattcgtcatttcagttatataacttactatcacatcgatccttgc |
554 |
Q |
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||||||| ||| |||||||| |||||| ||||| |||||||| ||||||||||||||| ||||||||| |
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| T |
8839991 |
aataattttgtccaaatgaagcaaatttgtcat--cagttataaaacttactatcacattgatccttgc |
8839925 |
T |
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