View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19673_high_3 (Length: 526)
Name: NF19673_high_3
Description: NF19673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19673_high_3 |
 | |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 461; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Complemental strand, 2326637 - 2326112
Alignment:
| Q |
1 |
ttaacatcccctcaacatctgtgataagtctttcactaaagtttccttgttcatccttgaattggttgaacacatctatatatttgagttaccacnnnnn |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2326637 |
ttaacatcccctcaacatctgtgataagtctttcactaaagtttccttgttcatccttgaattggttgaacacatctatatatttgagttaccaccaaaa |
2326538 |
T |
|
| Q |
101 |
nnttagagatgacaaaaaattagagactaggtttagggtttaggacttagaatgtacaaagtacgaatttttcttgcgtatagtaannnnnnnngtgtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2326537 |
aattagagatgacaaaaaattagagactaggtttagggtttaggacttagaatgtacaaagtacgaatttttcttgcgtatagtaattttttttgtgtgt |
2326438 |
T |
|
| Q |
201 |
gtgaactaagtgtgcttctcaattttttcaattaattattgtaagtagaccatgaattaattcaaaagaacaaatgtaaattagtttgatgcatactggg |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2326437 |
gtgaactaagtgtgcttctcaattttttcaattaattattgtaagtagaccatgaattaattcaaaagaacaaatgtaaattagtttgatgcatactggg |
2326338 |
T |
|
| Q |
301 |
tgatacatgaaatccttgttgcctcaacagcctgaatagaacagaaagagtgcaaaggttgtcttgaagagttatttctccattttcaacatagctcttg |
400 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
2326337 |
tgacacatgaaatccttgttgcctcaacagcctgaatagaacagaaagagtgcaaaggttgtcttcaagcgttatttctccattttcaacatagctcttg |
2326238 |
T |
|
| Q |
401 |
tgaatgtattgcataacttcattaatctcattttcgtaatgatagctcatacccaaacgacatatcgaatcaattaagttaattttttctgagggctttt |
500 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2326237 |
tgaatgtattgcataacttcatcaatctcattttcgtaatgatagctcacacccaaacgacatatcgaatcaattaagttaattttttctgagggctttt |
2326138 |
T |
|
| Q |
501 |
cagtttttgagatattaaacatgttt |
526 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
2326137 |
cagtttttgagatattaaacatgttt |
2326112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 293 - 473
Target Start/End: Original strand, 14267623 - 14267803
Alignment:
| Q |
293 |
atactgggtgatacatgaaatccttgttgcctcaacagcctgaatagaacagaaagagtgcaaaggttgtcttgaagagttatttctccattttcaacat |
392 |
Q |
| |
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||||| ||||| || | |||||||||||||||||||| ||| ||||| |||| ||||| |||||||||||| |||| ||| |||||||||||||||| |
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| T |
14267623 |
atactcggtgaaacgtaaaatccttgttgcctcaacaccctaaatagcacagcaagagaaaaaaggttgtcttcaagaattacttctccattttcaacac |
14267722 |
T |
|
| Q |
393 |
agctcttgtgaatgtattgcataacttcattaatctcattttcgtaatgatagctcatacccaaacgacatatcgaatcaa |
473 |
Q |
| |
|
|||||||||||| | ||||| ||| |||| ||| || ||||| | ||||| |||| ||||||||||||||| ||||||| |
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| T |
14267723 |
agctcttgtgaacttgttgcaaaacatcatcaatttctttttcaaagtgataactcacacccaaacgacatattgaatcaa |
14267803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 14267003 - 14267076
Alignment:
| Q |
5 |
catcccctcaacatctgtgataagtctttcactaaagtttccttgttcatccttgaattggttgaacacatcta |
78 |
Q |
| |
|
|||||| ||||| || ||||||||| |||| ||||||||||||| | ||||||||| | | |||||||||||| |
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| T |
14267003 |
catcccttcaacgtccgtgataagtgtttcgttaaagtttccttgcttatccttgaacttggtgaacacatcta |
14267076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 291 - 479
Target Start/End: Complemental strand, 31159189 - 31158998
Alignment:
| Q |
291 |
gcatactgggtgatacatgaaatccttgttgcctcaacagcctgaatagaacagaaagagtgcaaaggttgtcttgaagagt---tatttctccattttc |
387 |
Q |
| |
|
||||||| ||||| ||||||| ||||||||||||||||| ||| ||||| |||| ||||| |||||||||||||| || | | |||||||||||||| |
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| T |
31159189 |
gcatacttggtgaaacatgaagtccttgttgcctcaacaacctaaatagcacagcaagagagcaaaggttgtcttcaaaaataattatttctccattttg |
31159090 |
T |
|
| Q |
388 |
aacatagctcttgtgaatgtattgcataacttcattaatctcattttcgtaatgatagctcatacccaaacgacatatcgaatcaattaagt |
479 |
Q |
| |
|
|||||| |||| ||||| | ||||| ||| || | |||||||||||| |||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
31159089 |
aacataattcttatgaatatgttgcaaaacctcttcaatctcattttcaaaatgatagctcacacccaaacgacatattgaatcaattaagt |
31158998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 293 - 474
Target Start/End: Complemental strand, 25832252 - 25832071
Alignment:
| Q |
293 |
atactgggtgatacatgaaatccttgttgcctcaacagcctgaatagaacagaaagagtgcaaaggttgtcttgaagagttatttctccattttcaacat |
392 |
Q |
| |
|
||||| ||||| |||| |||||||||||||||||| | ||| ||||| |||| |||| | ||||| |||||| |||| |||||||||||||||||||| |
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| T |
25832252 |
atacttggtgaaacataaaatccttgttgcctcaaaaccctaaatagcacagcgagagagtaaaggctgtctttaagaattatttctccattttcaacac |
25832153 |
T |
|
| Q |
393 |
agctcttgtgaatgtattgcataacttcattaatctcattttcgtaatgatagctcatacccaaacgacatatcgaatcaat |
474 |
Q |
| |
|
|||| |||||||| | ||||| |||||| | |||||| ||||| ||||||| || | ||| | ||||||||| |||||||| |
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| T |
25832152 |
agctgttgtgaatatgttgcaaaacttcgtcaatctcgttttcaaaatgataactaacaccgagacgacatattgaatcaat |
25832071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 293 - 479
Target Start/End: Original strand, 41352131 - 41352325
Alignment:
| Q |
293 |
atactgggtgatacatgaaatccttgttgcctcaacagcctgaatagaacagaaagagtgcaaaggttgtcttgaagag------ttatttctccatttt |
386 |
Q |
| |
|
||||| ||||| || |||||||||||||||||||||| ||| ||||| |||| ||||| ||||| |||||||| || || ||||||||||||||| |
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|
| T |
41352131 |
atacttggtgaaacgtgaaatccttgttgcctcaacaacctaaatagcacagcaagagagcaaatgttgtcttcaaaagtaattattatttctccatttt |
41352230 |
T |
|
| Q |
387 |
caacatagctcttgtgaatgta--ttgcataacttcattaatctcattttcgtaatgatagctcatacccaaacgacatatcgaatcaattaagt |
479 |
Q |
| |
|
||||||| | |||||||| || | ||| ||| || | |||||||| ||| |||||||||| || |||||||||||||| |||||||| |||| |
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| T |
41352231 |
caacataattattgtgaatatatgtagcaaaacctcttcaatctcatgttcaaaatgatagcttattcccaaacgacatattgaatcaatcaagt |
41352325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 41351957 - 41352034
Alignment:
| Q |
1 |
ttaacatcccctcaacatctgtgataagtctttcactaaagtttccttgttcatccttgaattggttgaacacatcta |
78 |
Q |
| |
|
||||||| |||||||| || | |||||||||||||| ||||||||||||||||||||||||| |||||| ||||||| |
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|
| T |
41351957 |
ttaacattccctcaacgtccataataagtctttcactgaagtttccttgttcatccttgaatttgttgaatacatcta |
41352034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 41318604 - 41318681
Alignment:
| Q |
1 |
ttaacatcccctcaacatctgtgataagtctttcactaaagtttccttgttcatccttgaattggttgaacacatcta |
78 |
Q |
| |
|
|||| ||||||||||||| ||| |||| | ||| ||||||||||||||| ||||||||||||| |||||| ||||||| |
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|
| T |
41318604 |
ttaaaatcccctcaacatttgtaataaatttttgactaaagtttccttgctcatccttgaatttgttgaatacatcta |
41318681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 479
Target Start/End: Complemental strand, 31198555 - 31198366
Alignment:
| Q |
293 |
atactgggtgatacatgaaatccttgttgcctcaacagcctgaatagaacagaaagagtgcaaaggttgtctt---gaagagttatttctccattttcaa |
389 |
Q |
| |
|
|||| |||||| || |||| |||||||||||||| || ||| ||||| |||| ||||| ||||||||||| || || | ||||||||||||||| || |
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| T |
31198555 |
ataccgggtgaaacgtgaagtccttgttgcctcagcaacctaaatagcacagcaagagagcaaaggttgttttcgaaaataattatttctccattttgaa |
31198456 |
T |
|
| Q |
390 |
catagctcttgtgaatgtattgcataacttcattaatctcattttcgtaatgatagctcatacccaaacgacatatcgaatcaattaagt |
479 |
Q |
| |
|
|||| |||| ||||| | ||||| ||| || | |||||| ||||| | ||||| |||| |||||| || ||||| |||||||| |||| |
|
|
| T |
31198455 |
cataattcttatgaatatgttgcaaaacctcttcaatctccttttcaaagtgataactcacacccaagcggcatattgaatcaatcaagt |
31198366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 31159768 - 31159692
Alignment:
| Q |
1 |
ttaacatcccctcaacatctgtgataagtctttcactaaagtttccttgttcatccttgaattggttgaacacatct |
77 |
Q |
| |
|
||||||||||||||||||| |||| ||||| |||||| |||||||| ||||||||||| | |||||| |||||| |
|
|
| T |
31159768 |
ttaacatcccctcaacatcaacaataattcttttactaaattttccttgctcatccttgaacttgttgaatacatct |
31159692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 31198958 - 31198882
Alignment:
| Q |
1 |
ttaacatcccctcaacatctgtgataagtctttcactaaagtttccttgttcatccttgaattggttgaacacatct |
77 |
Q |
| |
|
|||||| |||||||||||| |||| ||||||||| |||||||| | ||||||||||||| ||||||||||||| |
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|
| T |
31198958 |
ttaacagcccctcaacatcccctataattctttcactgaagtttccatcctcatccttgaatttgttgaacacatct |
31198882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 293 - 474
Target Start/End: Complemental strand, 25792126 - 25791942
Alignment:
| Q |
293 |
atactgggtgatacatgaaatccttgttgcctcaacagcctgaatagaacagaaagagtgcaaaggttgtcttgaagagt---tatttctccattttcaa |
389 |
Q |
| |
|
||||| ||||| || |||| ||||||||||||||||| ||| ||||| |||| ||||| |||||||||||||| || ||| |||||||||||||| || |
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|
| T |
25792126 |
atacttggtgaaacgtgaagtccttgttgcctcaacaacctaaatagcacagcaagagagcaaaggttgtcttcaaaagtaattatttctccattttgaa |
25792027 |
T |
|
| Q |
390 |
catagctcttgtgaatgtattgcataacttcattaatctcattttcgtaatgatagctcatacccaaacgacatatcgaatcaat |
474 |
Q |
| |
|
|||| |||||||||| | ||||| || |||| |||||||| ||| |||||||| ||| ||||||||| |||||||||||||| |
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|
| T |
25792026 |
cataattcttgtgaatatcttgcaaaatctcatcaatctcatcttcaaaatgatagttcaaacccaaacggcatatcgaatcaat |
25791942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 25792485 - 25792409
Alignment:
| Q |
2 |
taacatcccctcaacatctgtgataagtctttcactaaagtttccttgttcatccttgaattggttgaacacatcta |
78 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||| || ||| ||||||| |
|
|
| T |
25792485 |
taacatctcctcaacatccctgataagtctttcactaaagtttccttgatcatccttgaatttgtagaatacatcta |
25792409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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