View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19673_low_10 (Length: 370)

Name: NF19673_low_10
Description: NF19673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19673_low_10
NF19673_low_10
[»] chr2 (3 HSPs)
chr2 (1-364)||(40639111-40639475)
chr2 (309-355)||(20947844-20947890)
chr2 (327-363)||(24739571-24739607)
[»] chr6 (2 HSPs)
chr6 (252-355)||(7824449-7824559)
chr6 (252-355)||(32197134-32197244)
[»] chr5 (2 HSPs)
chr5 (252-287)||(30722903-30722938)
chr5 (320-352)||(704835-704867)
[»] chr3 (1 HSPs)
chr3 (293-364)||(4740719-4740790)
[»] chr1 (1 HSPs)
chr1 (321-356)||(26260498-26260533)
[»] chr7 (1 HSPs)
chr7 (327-364)||(27854636-27854673)


Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 40639475 - 40639111
Alignment:
Q  1 tgtgttgtgtaggatttagatttcgggtggaggcgctgaatgaaagagttgaatattggatttgtatgggcggaatgtgaatatggaagtgaggattgcg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  40639475 tgtgttgtgtaggatttagatttcgggtggaggcgctgaatgaaagtgttgaatattggatttgtatgggcggaatgtgaatatggaagtgaggattgtg 40639376  T
Q  101 aaagggtcaattgaggtttcaagattcaatgatattaactaaagtgaaacattatgggaggatgcagcctctcaaagttcatgatattaacc-nnnnnnn 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||            
T  40639375 aaagggtcaattgaggtttcaagattcaatgatattaactaaagtgaaacattatgggaggatgcagcctctcaaagttcatcatattaaccattttttt 40639276  T
Q  200 nnaagtgacttataataaaaaatattataattannnnnnncgcgacagcctacccacaaaagataatttgctccgtcgtggtgttattgatcaaggttgt 299  Q
      |||||||||||||||||||||||||||||||       |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40639275 ttaagtgacttataataaaaaatattataattatttttttcgcgacaggctatccacaaaagataatttgctccgtcgtggtgttattgatcaaggttgt 40639176  T
Q  300 gcgtgtctcgttgtggctccttggaatcatcaaatcatttatttttacattgtaatattcttgga 364  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  40639175 gcgtgtctggttgtggctccttggaatcatcaaatcatttatttttacattgtaatttttttgga 40639111  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 355
Target Start/End: Original strand, 20947844 - 20947890
Alignment:
Q  309 gttgtggctccttggaatcatcaaatcatttatttttacattgtaat 355  Q
    |||||||||| |||||||| ||||||||||||||| | |||||||||    
T  20947844 gttgtggctctttggaatcttcaaatcatttatttcttcattgtaat 20947890  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 24739571 - 24739607
Alignment:
Q  327 catcaaatcatttatttttacattgtaatattcttgg 363  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  24739571 catctaatcatttatttttacattgtaatatttttgg 24739607  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 252 - 355
Target Start/End: Complemental strand, 7824559 - 7824449
Alignment:
Q  252 cccacaaaagataatttgctccgtcgtggtgttattga-------tcaaggttgtgcgtgtctcgttgtggctccttggaatcatcaaatcatttatttt 344  Q
    |||||||||||||||||| |||||||||||||||||||       || ||| | || ||  || |||||||||| |||||||| ||||||||||| ||||    
T  7824559 cccacaaaagataatttgttccgtcgtggtgttattgacgaaacatccaggctatgtgtcgctggttgtggctctttggaatcttcaaatcatttgtttt 7824460  T
Q  345 tacattgtaat 355  Q
    |||||||||||    
T  7824459 tacattgtaat 7824449  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 252 - 355
Target Start/End: Complemental strand, 32197244 - 32197134
Alignment:
Q  252 cccacaaaagataatttgctccgtcgtggtgttattgatca-------aggttgtgcgtgtctcgttgtggctccttggaatcatcaaatcatttatttt 344  Q
    ||||||||||||||||| ||||||||||| |||||||||||       |||||||| |||||| ||||||| || |||||||| ||  | || |||||||    
T  32197244 cccacaaaagataatttactccgtcgtggcgttattgatcaagcatccaggttgtgtgtgtctggttgtggatcgttggaatcgtctcaacacttatttt 32197145  T
Q  345 tacattgtaat 355  Q
    |||||||||||    
T  32197144 tacattgtaat 32197134  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 287
Target Start/End: Complemental strand, 30722938 - 30722903
Alignment:
Q  252 cccacaaaagataatttgctccgtcgtggtgttatt 287  Q
    |||||||||||||||||| |||||||||||||||||    
T  30722938 cccacaaaagataatttgttccgtcgtggtgttatt 30722903  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 704867 - 704835
Alignment:
Q  320 ttggaatcatcaaatcatttatttttacattgt 352  Q
    ||||||||||||||||||||||| |||||||||    
T  704867 ttggaatcatcaaatcatttattcttacattgt 704835  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 364
Target Start/End: Original strand, 4740719 - 4740790
Alignment:
Q  293 aggttgtgcgtgtctcgttgtggctccttggaatcatcaaatcatttatttttacattgtaatattcttgga 364  Q
    |||||||| ||||||  ||||||||| |||||||||||  | || |||||||||||||||||| || |||||    
T  4740719 aggttgtgtgtgtctgattgtggctcgttggaatcatctcaacacttatttttacattgtaatttttttgga 4740790  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 321 - 356
Target Start/End: Original strand, 26260498 - 26260533
Alignment:
Q  321 tggaatcatcaaatcatttatttttacattgtaata 356  Q
    |||||||||||||||||||||| |||||||||||||    
T  26260498 tggaatcatcaaatcatttattcttacattgtaata 26260533  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 27854636 - 27854673
Alignment:
Q  327 catcaaatcatttatttttacattgtaatattcttgga 364  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  27854636 catctaatcatttatttttacattgtaatatttttgga 27854673  T

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