View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19673_low_11 (Length: 353)
Name: NF19673_low_11
Description: NF19673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19673_low_11 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 2174338 - 2174689
Alignment:
| Q |
1 |
tattgattggtattttgtaagctttgaacaatataacattctattataagtgaaacagtgataaacatgaatccaagtaattttggtctctaaatatttg |
100 |
Q |
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| T |
2174338 |
tattgattggtattttgtaagctttgaacaatataacattctattaaaagtgaaacagtgataaacatgaatccaagtaattttggtctctaaatatttg |
2174437 |
T |
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| Q |
101 |
aaacaatctcattctagccatgcatatttcaaaatcatcaaaatgtttgagtgtatcttctatttccaattttataaataatggacaatcagaagatgta |
200 |
Q |
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| T |
2174438 |
aaacaatctcattctagccatgcatatttcaaaatcatcaaaatgtttgagtgtatcttctatttccaattttataaataatggacaatcagaagatgta |
2174537 |
T |
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| Q |
201 |
tcataaaaagcacattcgagaactaataactaactaacggaaaacacattcagaaatggttttagaattttgatattcaaggaatcaataattgttttca |
300 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
2174538 |
tcataaaaagcacattcgagaactaataactaacttacggaaaacacattcagaaatagttttagaa-tttgatattcaaggaataaataattgttttca |
2174636 |
T |
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| Q |
301 |
catttttcattgtcatacctgaagagtgagacctggacaagggtactaggcca |
353 |
Q |
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| T |
2174637 |
cattttttattgtcatacctgaagagtgagacctggacaagggtactaggcca |
2174689 |
T |
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