View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19673_low_13 (Length: 316)
Name: NF19673_low_13
Description: NF19673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19673_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 3 - 293
Target Start/End: Complemental strand, 51677313 - 51677024
Alignment:
| Q |
3 |
atcacacacacttgatttccaatatattgtatttatttattttttgctaagaagtttataaattctttatcataaaccatcatataggacagtttaccac |
102 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
51677313 |
atcagacacaattgatttccaatatattgtatttatttattttttgctaagaagtttataaattctttatcataaaccat---ataggacagtttaccac |
51677217 |
T |
|
| Q |
103 |
ctagcaattatagaattacagtgtcatacgcctttctttaaaaagttttacctcctatcccaattatttccctatcaattgatgaggcaggactacaaaa |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51677216 |
ctagcaattatagaattacagtgtcatacgcctttctttaaaaagttttacctcccatcccaattatttccctatcaattgatgaggcaggactacaaaa |
51677117 |
T |
|
| Q |
203 |
agggtggattctcaatgttggacgtttgagagaaagaaagggcataaccaaggacctcactaagacaca--cacagacacagctaggtaggag |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
51677116 |
agggtggattctcaatgttggacgtttgagagaaagaaagggcataaccaaggacctcactaagacacacacacagacacagctaggtaggag |
51677024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University