View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19673_low_19 (Length: 238)

Name: NF19673_low_19
Description: NF19673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19673_low_19
NF19673_low_19
[»] chr4 (27 HSPs)
chr4 (36-238)||(11415960-11416161)
chr4 (40-214)||(25219567-25219742)
chr4 (40-141)||(8667087-8667187)
chr4 (72-215)||(23795374-23795519)
chr4 (74-194)||(44453103-44453224)
chr4 (40-141)||(33040563-33040664)
chr4 (40-131)||(39406806-39406897)
chr4 (40-141)||(18234230-18234331)
chr4 (53-117)||(34657915-34657979)
chr4 (62-134)||(44673686-44673758)
chr4 (43-129)||(37005893-37005984)
chr4 (43-193)||(34511995-34512146)
chr4 (51-137)||(11485197-11485284)
chr4 (74-194)||(6192520-6192640)
chr4 (64-133)||(41068852-41068922)
chr4 (65-126)||(15159407-15159468)
chr4 (69-133)||(16913388-16913453)
chr4 (46-118)||(19298804-19298877)
chr4 (76-125)||(38499875-38499924)
chr4 (74-134)||(1924677-1924737)
chr4 (62-134)||(18487442-18487513)
chr4 (62-129)||(4936025-4936092)
chr4 (40-193)||(17940951-17941106)
chr4 (70-139)||(13336939-13337009)
chr4 (64-194)||(20367524-20367644)
chr4 (77-134)||(3007309-3007366)
chr4 (104-141)||(20383937-20383974)
[»] scaffold0176 (1 HSPs)
scaffold0176 (36-208)||(26373-26544)
[»] chr6 (49 HSPs)
chr6 (64-202)||(31633595-31633733)
chr6 (37-214)||(8212241-8212419)
chr6 (64-202)||(33325856-33325992)
chr6 (44-198)||(14641368-14641521)
chr6 (40-141)||(20898950-20899051)
chr6 (44-197)||(13565841-13565998)
chr6 (43-141)||(9351116-9351214)
chr6 (44-133)||(13574997-13575086)
chr6 (44-133)||(13577536-13577625)
chr6 (40-193)||(12435888-12436043)
chr6 (51-194)||(15141904-15142045)
chr6 (40-197)||(26592511-26592667)
chr6 (44-211)||(13570381-13570550)
chr6 (40-134)||(14372175-14372269)
chr6 (64-199)||(17112236-17112370)
chr6 (51-114)||(24617733-24617796)
chr6 (43-141)||(1110444-1110542)
chr6 (40-141)||(32569817-32569919)
chr6 (40-129)||(3056937-3057026)
chr6 (42-126)||(34338085-34338169)
chr6 (51-117)||(8483632-8483698)
chr6 (43-194)||(20589572-20589719)
chr6 (40-134)||(24127813-24127907)
chr6 (74-141)||(26522711-26522780)
chr6 (40-141)||(9696847-9696948)
chr6 (40-141)||(18306717-18306817)
chr6 (45-141)||(24373503-24373599)
chr6 (90-194)||(30492279-30492381)
chr6 (40-141)||(14982378-14982476)
chr6 (53-129)||(841306-841383)
chr6 (43-96)||(11319502-11319555)
chr6 (43-135)||(9344472-9344564)
chr6 (62-141)||(24353202-24353282)
chr6 (46-129)||(1448790-1448873)
chr6 (43-141)||(30884390-30884486)
chr6 (68-129)||(11650839-11650900)
chr6 (51-96)||(15050036-15050081)
chr6 (161-202)||(20898888-20898929)
chr6 (43-96)||(24205493-24205546)
chr6 (74-129)||(10138871-10138926)
chr6 (74-129)||(22955759-22955814)
chr6 (74-129)||(23832579-23832634)
chr6 (74-129)||(27962066-27962121)
chr6 (62-96)||(22705348-22705382)
chr6 (57-117)||(7242881-7242941)
chr6 (74-122)||(8462014-8462062)
chr6 (74-134)||(10192847-10192907)
chr6 (74-138)||(13580179-13580243)
chr6 (52-128)||(34214553-34214628)
[»] chr2 (34 HSPs)
chr2 (50-214)||(40926460-40926624)
chr2 (64-202)||(17151222-17151360)
chr2 (67-194)||(24270833-24270959)
chr2 (67-194)||(24297277-24297403)
chr2 (40-134)||(36802254-36802348)
chr2 (44-141)||(17377499-17377596)
chr2 (51-141)||(20434182-20434275)
chr2 (40-141)||(12102796-12102898)
chr2 (40-134)||(20477420-20477514)
chr2 (69-191)||(28948810-28948931)
chr2 (43-193)||(28522789-28522938)
chr2 (43-141)||(38376856-38376955)
chr2 (40-130)||(22169955-22170045)
chr2 (64-141)||(21565846-21565923)
chr2 (74-194)||(30418911-30419033)
chr2 (40-192)||(29216539-29216692)
chr2 (40-192)||(29329838-29329991)
chr2 (40-132)||(34454887-34454979)
chr2 (40-141)||(38242124-38242225)
chr2 (50-122)||(13619093-13619165)
chr2 (74-194)||(24440001-24440121)
chr2 (70-141)||(32234445-32234517)
chr2 (62-129)||(6083735-6083802)
chr2 (40-134)||(17679703-17679797)
chr2 (40-134)||(28698188-28698282)
chr2 (74-134)||(17678312-17678372)
chr2 (74-141)||(20374140-20374210)
chr2 (74-129)||(24524099-24524154)
chr2 (74-129)||(26916628-26916683)
chr2 (73-194)||(1490591-1490710)
chr2 (167-200)||(16110058-16110091)
chr2 (149-194)||(20428668-20428712)
chr2 (76-121)||(27206407-27206452)
chr2 (72-104)||(24933718-24933750)
[»] scaffold0009 (1 HSPs)
scaffold0009 (39-202)||(1482-1646)
[»] chr1 (45 HSPs)
chr1 (36-199)||(41574284-41574446)
chr1 (68-202)||(12629266-12629400)
chr1 (36-140)||(34528904-34529008)
chr1 (39-199)||(43021723-43021884)
chr1 (36-206)||(10032073-10032238)
chr1 (64-202)||(19100213-19100349)
chr1 (64-202)||(32943678-32943815)
chr1 (65-193)||(28015932-28016060)
chr1 (40-206)||(19088796-19088963)
chr1 (64-202)||(34507883-34508020)
chr1 (40-141)||(10423790-10423891)
chr1 (51-194)||(19054385-19054525)
chr1 (43-141)||(18332693-18332790)
chr1 (42-194)||(27035843-27035997)
chr1 (70-194)||(31893046-31893173)
chr1 (44-141)||(16816227-16816322)
chr1 (68-215)||(34879933-34880081)
chr1 (36-124)||(26505887-26505975)
chr1 (46-174)||(42264373-42264501)
chr1 (43-129)||(21487828-21487914)
chr1 (40-134)||(34517674-34517768)
chr1 (40-141)||(907648-907749)
chr1 (43-128)||(13309371-13309456)
chr1 (70-141)||(3833445-3833517)
chr1 (40-193)||(23487385-23487540)
chr1 (64-194)||(15120877-15121006)
chr1 (64-194)||(15145065-15145194)
chr1 (43-127)||(10433199-10433283)
chr1 (74-129)||(17122829-17122884)
chr1 (51-125)||(33064820-33064894)
chr1 (96-194)||(46391557-46391653)
chr1 (40-85)||(14986127-14986172)
chr1 (64-129)||(15114153-15114218)
chr1 (64-129)||(15127169-15127234)
chr1 (76-121)||(41917086-41917131)
chr1 (42-141)||(11779316-11779416)
chr1 (74-141)||(15318104-15318171)
chr1 (74-134)||(21813158-21813218)
chr1 (42-141)||(1624028-1624127)
chr1 (74-129)||(27177599-27177654)
chr1 (40-141)||(2583068-2583170)
chr1 (149-202)||(9133067-9133119)
chr1 (64-141)||(13533423-13533500)
chr1 (64-141)||(19068611-19068688)
chr1 (64-141)||(19116501-19116578)
[»] scaffold0437 (2 HSPs)
scaffold0437 (44-198)||(11345-11499)
scaffold0437 (40-141)||(14319-14421)
[»] chr3 (24 HSPs)
chr3 (43-202)||(25759947-25760106)
chr3 (37-208)||(26953937-26954104)
chr3 (40-193)||(1051306-1051458)
chr3 (40-141)||(18517666-18517767)
chr3 (41-202)||(26430185-26430345)
chr3 (76-202)||(40790594-40790718)
chr3 (67-215)||(10997341-10997489)
chr3 (40-131)||(19826401-19826492)
chr3 (62-141)||(51661668-51661747)
chr3 (40-138)||(16037948-16038046)
chr3 (54-117)||(10623238-10623301)
chr3 (44-134)||(16041497-16041587)
chr3 (40-134)||(16053448-16053542)
chr3 (43-129)||(16309657-16309743)
chr3 (43-129)||(18490651-18490737)
chr3 (49-129)||(19256127-19256207)
chr3 (43-141)||(19185066-19185162)
chr3 (70-192)||(2899863-2899988)
chr3 (74-134)||(47165909-47165969)
chr3 (40-189)||(3736419-3736570)
chr3 (40-141)||(2928563-2928664)
chr3 (46-131)||(5813554-5813639)
chr3 (74-118)||(20952399-20952443)
chr3 (66-118)||(27943628-27943680)
[»] scaffold0068 (1 HSPs)
scaffold0068 (41-193)||(2229-2382)
[»] chr7 (30 HSPs)
chr7 (37-141)||(1633292-1633396)
chr7 (62-137)||(1537969-1538044)
chr7 (57-194)||(12163333-12163467)
chr7 (43-129)||(980919-981005)
chr7 (45-131)||(28780179-28780265)
chr7 (40-141)||(11295355-11295461)
chr7 (70-141)||(4463449-4463521)
chr7 (40-128)||(14073790-14073877)
chr7 (40-128)||(14383818-14383905)
chr7 (47-141)||(22849520-22849614)
chr7 (70-194)||(15468274-15468398)
chr7 (70-141)||(28937335-28937407)
chr7 (74-129)||(1862350-1862405)
chr7 (44-141)||(10996364-10996459)
chr7 (70-141)||(4407428-4407500)
chr7 (74-134)||(12727796-12727856)
chr7 (40-131)||(3399540-3399631)
chr7 (69-180)||(11842706-11842815)
chr7 (74-121)||(37375017-37375064)
chr7 (74-125)||(38993120-38993171)
chr7 (45-95)||(2040072-2040122)
chr7 (76-125)||(20382337-20382386)
chr7 (62-134)||(24573681-24573753)
chr7 (102-141)||(9411264-9411303)
chr7 (36-126)||(5461496-5461586)
chr7 (149-194)||(7324257-7324301)
chr7 (47-128)||(23050630-23050711)
chr7 (70-194)||(32021900-32022026)
chr7 (74-141)||(17157579-17157647)
chr7 (74-134)||(18270319-18270379)
[»] chr5 (29 HSPs)
chr5 (41-193)||(21711528-21711681)
chr5 (44-198)||(15614666-15614822)
chr5 (44-141)||(2259390-2259485)
chr5 (40-141)||(19068683-19068784)
chr5 (40-141)||(35341877-35341977)
chr5 (74-194)||(28682780-28682901)
chr5 (40-131)||(5781069-5781160)
chr5 (51-141)||(24765501-24765589)
chr5 (44-141)||(4120507-4120604)
chr5 (74-141)||(21027039-21027109)
chr5 (40-141)||(6129684-6129786)
chr5 (62-194)||(10720815-10720948)
chr5 (40-141)||(34995438-34995539)
chr5 (74-129)||(11725648-11725703)
chr5 (74-121)||(28637626-28637673)
chr5 (74-129)||(39324369-39324424)
chr5 (40-202)||(32038410-32038569)
chr5 (40-201)||(21877890-21878050)
chr5 (40-125)||(31329266-31329351)
chr5 (36-92)||(24122975-24123031)
chr5 (74-121)||(22602054-22602101)
chr5 (43-86)||(25538844-25538887)
chr5 (75-125)||(28122342-28122393)
chr5 (40-141)||(13642797-13642898)
chr5 (69-133)||(25247627-25247692)
chr5 (69-133)||(25311411-25311476)
chr5 (45-141)||(29998565-29998662)
chr5 (149-194)||(37634472-37634516)
chr5 (152-192)||(36489303-36489343)
[»] chr8 (33 HSPs)
chr8 (40-134)||(26657662-26657756)
chr8 (40-141)||(16290844-16290945)
chr8 (44-193)||(24184744-24184894)
chr8 (64-214)||(29250256-29250409)
chr8 (46-202)||(26867384-26867541)
chr8 (40-141)||(29840849-29840950)
chr8 (40-141)||(10568289-10568391)
chr8 (40-194)||(23595309-23595466)
chr8 (40-194)||(23604231-23604388)
chr8 (40-131)||(45268824-45268915)
chr8 (40-141)||(21593170-21593272)
chr8 (64-194)||(15234775-15234905)
chr8 (40-141)||(16889962-16890063)
chr8 (45-141)||(41600712-41600808)
chr8 (40-141)||(6001409-6001511)
chr8 (45-141)||(44337-44431)
chr8 (44-125)||(24317404-24317484)
chr8 (44-115)||(18036809-18036880)
chr8 (69-133)||(19742037-19742102)
chr8 (62-127)||(26393353-26393418)
chr8 (69-136)||(21499360-21499427)
chr8 (40-141)||(16325609-16325708)
chr8 (40-134)||(17274705-17274799)
chr8 (45-127)||(17959894-17959976)
chr8 (152-193)||(29233297-29233338)
chr8 (69-136)||(24527796-24527864)
chr8 (75-141)||(4206432-4206499)
chr8 (40-194)||(14413270-14413426)
chr8 (43-141)||(16932555-16932651)
chr8 (74-129)||(43856118-43856173)
chr8 (51-125)||(43848102-43848176)
chr8 (40-141)||(14335295-14335396)
chr8 (76-125)||(40263681-40263730)
[»] scaffold0012 (3 HSPs)
scaffold0012 (64-202)||(52637-52774)
scaffold0012 (62-134)||(103701-103773)
scaffold0012 (40-138)||(55765-55863)
[»] scaffold0195 (2 HSPs)
scaffold0195 (64-202)||(9000-9133)
scaffold0195 (64-202)||(14389-14522)
[»] scaffold0911 (1 HSPs)
scaffold0911 (40-193)||(2208-2361)
[»] scaffold0607 (1 HSPs)
scaffold0607 (40-131)||(296-387)
[»] scaffold0093 (1 HSPs)
scaffold0093 (40-202)||(15949-16113)
[»] scaffold0291 (2 HSPs)
scaffold0291 (68-233)||(15567-15738)
scaffold0291 (74-134)||(21897-21957)
[»] scaffold0006 (1 HSPs)
scaffold0006 (41-134)||(36662-36755)
[»] scaffold0886 (1 HSPs)
scaffold0886 (46-134)||(2777-2865)
[»] scaffold0166 (1 HSPs)
scaffold0166 (51-141)||(7998-8086)
[»] scaffold0123 (1 HSPs)
scaffold0123 (67-215)||(29985-30140)
[»] scaffold0013 (1 HSPs)
scaffold0013 (72-139)||(100967-101033)
[»] scaffold0114 (1 HSPs)
scaffold0114 (51-197)||(2976-3119)
[»] scaffold0111 (1 HSPs)
scaffold0111 (51-141)||(41235-41328)
[»] scaffold0029 (1 HSPs)
scaffold0029 (74-141)||(129409-129476)
[»] scaffold0002 (1 HSPs)
scaffold0002 (74-141)||(307226-307293)
[»] scaffold0134 (1 HSPs)
scaffold0134 (40-129)||(2481-2570)
[»] scaffold0045 (1 HSPs)
scaffold0045 (53-122)||(80342-80411)
[»] scaffold0041 (1 HSPs)
scaffold0041 (76-125)||(3417-3466)
[»] scaffold0292 (1 HSPs)
scaffold0292 (40-96)||(21253-21309)
[»] scaffold0265 (1 HSPs)
scaffold0265 (74-134)||(19591-19651)
[»] scaffold1821 (1 HSPs)
scaffold1821 (74-129)||(980-1035)
[»] scaffold1667 (1 HSPs)
scaffold1667 (74-141)||(726-792)
[»] scaffold0363 (1 HSPs)
scaffold0363 (40-194)||(5285-5441)
[»] scaffold0356 (1 HSPs)
scaffold0356 (73-120)||(13734-13781)
[»] scaffold0238 (1 HSPs)
scaffold0238 (75-134)||(4434-4493)
[»] scaffold0196 (2 HSPs)
scaffold0196 (167-206)||(31328-31367)
scaffold0196 (62-96)||(797-831)
[»] scaffold0044 (1 HSPs)
scaffold0044 (74-141)||(20847-20913)
[»] scaffold0295 (1 HSPs)
scaffold0295 (149-195)||(18128-18173)
[»] scaffold0007 (1 HSPs)
scaffold0007 (74-140)||(173857-173923)
[»] scaffold0741 (1 HSPs)
scaffold0741 (149-194)||(6679-6723)
[»] scaffold0257 (1 HSPs)
scaffold0257 (43-92)||(16233-16282)
[»] scaffold0065 (1 HSPs)
scaffold0065 (149-194)||(42777-42821)
[»] scaffold0001 (1 HSPs)
scaffold0001 (161-194)||(20786-20819)


Alignment Details
Target: chr4 (Bit Score: 112; Significance: 9e-57; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 36 - 238
Target Start/End: Original strand, 11415960 - 11416161
Alignment:
Q  36 ctaggcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaat 135  Q
    ||||||||||||||||||||  ||| || ||||||||||||||||||||||| |||||||| | || |||||||||| |||||| |||||||||||||||    
T  11415960 ctaggcaaggagagaggacaaacatcaaaaggaaacaccgacatcccaactaagttggcaccctggaaaacccccattctatgctgccaaactctaaaat 11416059  T
Q  136 tttattnnnnnnn-gggaaaaatatatacaagaagaggggggactatgccaaaaccctcagaagaaaataaacagaaaaaactaaaacatactacaacat 234  Q
    ||||||        ||| ||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  11416060 tttattaaaaaaaaggggaaaatatatacaagaagagggg--actatgccaaaaccctaagaagaaaataaacagaaaaagctaaaacatactacaacat 11416157  T
Q  235 acta 238  Q
    ||||    
T  11416158 acta 11416161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 40 - 214
Target Start/End: Complemental strand, 25219742 - 25219567
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttta 139  Q
    ||||||||  ||||||| ||| | |||||||||||||||| ||||||||||||||||  ||||||||  ||  |||||||||||||||||||||||||||    
T  25219742 gcaaggagtaaggacatacatcaggaggaaacaccgacattccaactaggttggcacctcgggaaacttccgccctatgccgccaaactctaaaatttta 25219643  T
Q  140 ttnnnnnnngggaaaaatatatacaagaagaggggggactatgccaaaaccctcaga-agaaaataaacagaaaaa 214  Q
    ||       ||||||||||||||||| |||| ||| ||||| ||||||||||||| | | |||| |||||||||||    
T  25219642 ttaaaaaaagggaaaaatatatacaaaaagaagggagactaggccaaaaccctcaaagaaaaaacaaacagaaaaa 25219567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 8667087 - 8667187
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttta 139  Q
    |||||||||| ||||| |||| |||||| |||| |||||||| ||||||||||| || ||| |||||| ||||||||||||||||||||||||||| |||    
T  8667087 gcaaggagagtggacaggcatcaagaggcaacatcgacatcctaactaggttgg-accccgagaaacctccatcctatgccgccaaactctaaaatatta 8667185  T
Q  140 tt 141  Q
    ||    
T  8667186 tt 8667187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 72 - 215
Target Start/End: Complemental strand, 23795519 - 23795374
Alignment:
Q  72 accgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnnnnnnngggaaaaatatatacaagaagag 171  Q
    ||||||||||||||||||||||||  | | |||||| ||||||||||||| ||||||||||||||||||        ||| |||||||||||||||||||    
T  23795519 accgacatcccaactaggttggcatcctgtgaaacctccatcctatgccgtcaaactctaaaattttatcaaaaaaaggggaaaatatatacaagaagag 23795420  T
Q  172 gggggactatgccaaaaccctca--gaagaaaataaacagaaaaaa 215  Q
    |||  | ||  ||||||||||||  ||| |||| ||||||||||||    
T  23795419 gggacattagaccaaaaccctcaatgaaaaaaacaaacagaaaaaa 23795374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 194
Target Start/End: Original strand, 44453103 - 44453224
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgcc-gccaaactctaaaattttattnnnnnnngggaaaaatatatacaagaagagg 172  Q
    ||||||||||||||||||||||| ||||||| || || |||||| || | |||||||||||||||||||       ||| |||| ||||||||| |||||    
T  44453103 cgacatcccaactaggttggcaccccgggaagcctccgtcctatacccgtcaaactctaaaattttattaaaaaagggggaaaaaatatacaaggagagg 44453202  T
Q  173 ggggactatgccaaaaccctca 194  Q
    |||||||| |||||||||||||    
T  44453203 ggggactaggccaaaaccctca 44453224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 33040563 - 33040664
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttta 139  Q
    |||| ||||| | ||||| || |||||  |||| ||||||||||||||||||||||| ||| |||||| ||||| ||||||| |||||||||||||||||    
T  33040563 gcaaagagagtgaacatgtatcaagagacaacatcgacatcccaactaggttggcaccccgagaaacctccatcatatgccgtcaaactctaaaatttta 33040662  T
Q  140 tt 141  Q
    ||    
T  33040663 tt 33040664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 39406806 - 39406897
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactcta 131  Q
    |||||||| ||||| | |||| |||||| |||| |||| | |||||||||||||||| ||| |||||| |||||||||||||||||||||||    
T  39406806 gcaaggagtgaggataggcatcaagaggcaacatcgacttaccaactaggttggcaccccgagaaacctccatcctatgccgccaaactcta 39406897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 18234331 - 18234230
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttta 139  Q
    |||||||||||||||| |||||| |||  | || |||||| |||||||||||||||| ||| || ||| |||||||||||||||||| || |||| ||||    
T  18234331 gcaaggagagaggacaggcatgaggagtcatcatcgacattccaactaggttggcaccccgagatacctccatcctatgccgccaaattcaaaaaattta 18234232  T
Q  140 tt 141  Q
    ||    
T  18234231 tt 18234230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 34657915 - 34657979
Alignment:
Q  53 acatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctat 117  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| | |||||||    
T  34657915 acatgcatcaagaggaaacaccgacatcccaactaggttggcaccccggggaacctctatcctat 34657979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 44673686 - 44673758
Alignment:
Q  62 aagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaa 134  Q
    |||||| |||| ||||||||||||||||||||||| |||  ||| | ||||||||||||||||||||||||||    
T  44673686 aagaggcaacatcgacatcccaactaggttggcaccccgcaaaatctccatcctatgccgccaaactctaaaa 44673758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 37005893 - 37005984
Alignment:
Q  43 aggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacc-----cccatcctatgccgccaaactc 129  Q
    |||||||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||  ||||     || |||||||||||||||||||    
T  37005893 aggagagaggacatgcatcaagaggaagcaccgacatcccaattaggttggcaccccggagaacctctatcctatcctatgccgccaaactc 37005984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 193
Target Start/End: Complemental strand, 34512146 - 34511995
Alignment:
Q  43 aggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc-taaaattttatt 141  Q
    ||||||| ||||| |||| |||||| | || ||||||||||||||||||||||| |||||| |||  ||| ||| || |||||||||  |||||||||||    
T  34512146 aggagagtggacaggcatcaagaggcatcatcgacatcccaactaggttggcaccccgggagaccttcattctacgctgccaaactcgaaaaattttatt 34512047  T
Q  142 nnnnnnngggaaaaatatatacaagaagaggggggactatgccaaaaccctc 193  Q
           ||||||||||  ||||| | ||||||||||||  |||||||||||    
T  34512046 aaaaaaggggaaaaataattacaaaaggaggggggactagaccaaaaccctc 34511995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 137
Target Start/End: Original strand, 11485197 - 11485284
Alignment:
Q  51 ggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc-taaaattt 137  Q
    |||||||||| |||||| | |  ||||||||||||||||||||||| ||| ||  || ||||||||||||||||||||| ||||||||    
T  11485197 ggacatgcatcaagaggtatcttcgacatcccaactaggttggcaccccgagaggcctccatcctatgccgccaaactcataaaattt 11485284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 194
Target Start/End: Complemental strand, 6192640 - 6192520
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnnnnnnngggaaaa-atatatacaagaagagg 172  Q
    |||||||||||||||||||||||  || || ||| ||||| ||||||||||||||| |||| ||||||       ||||||| |||| |||||   ||||    
T  6192640 cgacatcccaactaggttggcacctcgagatacctccatcttatgccgccaaactcgaaaa-tttattaaaaaaggggaaaagatatttacaaagggagg 6192542  T
Q  173 ggggactatgccaaaaccctca 194  Q
    |||||||| |||||||||||||    
T  6192541 ggggactaagccaaaaccctca 6192520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 41068922 - 41068852
Alignment:
Q  64 gaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgcc-gccaaactctaaa 133  Q
    |||| |||||||||||||||||| ||||||||  ||||||| || || ||||||||| |||||||||||||    
T  41068922 gaggcaacaccgacatcccaactgggttggcatcccgggaagcctccgtcctatgcctgccaaactctaaa 41068852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 15159468 - 15159407
Alignment:
Q  65 aggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaa 126  Q
    |||||||| |||||||||||||| |||| ||| ||| |||||| ||| ||||||||||||||    
T  15159468 aggaaacaacgacatcccaactaagttgacactccgcgaaacctccaacctatgccgccaaa 15159407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 16913388 - 16913453
Alignment:
Q  69 aacaccgacatcccaactaggttggcacaccgggaaacccccatcctatg-ccgccaaactctaaa 133  Q
    |||||||||||||||||| ||||||||| ||||||| || || ||||||| | |||||||||||||    
T  16913388 aacaccgacatcccaactgggttggcactccgggaagcctccgtcctatgtctgccaaactctaaa 16913453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 19298804 - 19298877
Alignment:
Q  46 agagaggacatgcatgaagaggaaacaccgacatcccaactaggttggca-caccgggaaacccccatcctatg 118  Q
    |||||| |||| ||| |||||||||||| |||||| |||||||||||||| | ||||| |||| ||||||||||    
T  19298804 agagagaacatacatcaagaggaaacactgacatctcaactaggttggcacccccggggaacctccatcctatg 19298877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 38499875 - 38499924
Alignment:
Q  76 acatcccaactaggttggcacaccgggaaacccccatcctatgccgccaa 125  Q
    ||||||||||||||||||||| |||  |||||| ||||||||||||||||    
T  38499875 acatcccaactaggttggcaccccgcaaaaccctcatcctatgccgccaa 38499924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 1924677 - 1924737
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaa 134  Q
    ||||||||||||||||||||||| ||| || ||| |||||||||||| ||| |||| ||||    
T  1924677 cgacatcccaactaggttggcaccccgagacacctccatcctatgccaccacactcgaaaa 1924737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 18487513 - 18487442
Alignment:
Q  62 aagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaa 134  Q
    ||||||||||| |||||||| || ||||||||||| ||| |||||  | ||||||||||||||||||| ||||    
T  18487513 aagaggaaacaacgacatcc-aattaggttggcaccccgcgaaacatctatcctatgccgccaaactcaaaaa 18487442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 4936092 - 4936025
Alignment:
Q  62 aagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc 129  Q
    ||||||||||| |||||||||||||| |||||||| ||| ||||||  |||| ||  |||||||||||    
T  4936092 aagaggaaacatcgacatcccaactaagttggcaccccgcgaaaccttcatcatacaccgccaaactc 4936025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 193
Target Start/End: Complemental strand, 17941106 - 17940951
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttta 139  Q
    |||||||||||||||| ||||   |||| | || |||||| |||||||| |||| || | |||| ||  ||||||||||||||||| ||| |||| ||||    
T  17941106 gcaaggagagaggacaggcatcgggaggcatcatcgacattccaactagattggtaccctgggatacatccatcctatgccgccaagctcgaaaaattta 17941007  T
Q  140 ttnnnnnnnggg--aaaaatatatacaagaagaggggggactatgccaaaaccctc 193  Q
    ||       |||  ||| |||||||||| | |||| |||||||| |||||||||||    
T  17941006 ttaaaaaagggggaaaagatatatacaaaaggaggagggactataccaaaaccctc 17940951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 13337009 - 13336939
Alignment:
Q  70 acaccgacatcccaactaggttggcacaccgggaaacccccatcctatg-ccgccaaactctaaaatttta 139  Q
    ||||||||||||||||||| ||| ||| ||||||| || || ||||||| |||  ||||||||||||||||    
T  13337009 acaccgacatcccaactagattgacaccccgggaagcctccgtcctatgcccgttaaactctaaaatttta 13336939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 194
Target Start/End: Original strand, 20367524 - 20367644
Alignment:
Q  64 gaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnnnnnnngggaaaaatatatac 163  Q
    ||||||||||| ||||||||   |||||| ||   ||||||||| |  |||||||||| ||||||||||||||||||         ||||||||||||||    
T  20367524 gaggaaacaccaacatcccagtcaggttgacatctcgggaaacctctgtcctatgccgtcaaactctaaaattttat---------ggaaaaatatatac 20367614  T
Q  164 aagaagaggggggactatgccaaaaccctca 194  Q
    || |||| ||||||||| || ||||||||||    
T  20367615 aaaaaga-gggggactaggctaaaaccctca 20367644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 3007309 - 3007366
Alignment:
Q  77 catcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaa 134  Q
    ||||||||||||||||| || ||| || ||| |||||||||||||||| |||| ||||    
T  3007309 catcccaactaggttggtaccccgagacacctccatcctatgccgccacactcgaaaa 3007366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 20383974 - 20383937
Alignment:
Q  104 aacccccatcctatgccgccaaactctaaaattttatt 141  Q
    |||||||||||||||||||||| || ||||||||||||    
T  20383974 aacccccatcctatgccgccaagctataaaattttatt 20383937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 36 - 208
Target Start/End: Complemental strand, 26544 - 26373
Alignment:
Q  36 ctaggcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaat 135  Q
    |||||||| ||||||||||||||||  |||||||||||| ||||||| | ||||||||||  |||||||||| ||||||||| ||| |||||||||||||    
T  26544 ctaggcaaagagagaggacatgcatcgagaggaaacaccaacatccc-attaggttggcatcccgggaaacctccatcctataccgtcaaactctaaaat 26446  T
Q  136 tttattnnnnnnngggaaaaatatatacaagaagaggggggactatgccaaaaccctcagaagaaaataaaca 208  Q
     ||||        |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26445 attatcaaaaaatgggaaaaagatatacaagaagaggggggactaggccaaaaccctcagaagaaaataaaca 26373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 49)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 64 - 202
Target Start/End: Original strand, 31633595 - 31633733
Alignment:
Q  64 gaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnnnnnnngggaaaaatatatac 163  Q
    ||||||||||||||||||||||||| ||||||  | |||||||| || ||||||||||||||||||||||||||||||        ||||||||||||||    
T  31633595 gaggaaacaccgacatcccaactagattggcatcctgggaaacctccgtcctatgccgccaaactctaaaattttattaaaaaaaaggaaaaatatatac 31633694  T
Q  164 aagaagaggggggactatgccaaaaccctcagaagaaaa 202  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  31633695 aagaagaggggggactaggccaaaaccctcagaagaaaa 31633733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 37 - 214
Target Start/End: Original strand, 8212241 - 8212419
Alignment:
Q  37 taggcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatt 136  Q
    ||||||||||||||| |||  ||| || | |||||| ||||||  ||| ||||||||||| ||| |||||| |||||||||||||| |||||||||||||    
T  8212241 taggcaaggagagagaacagacatcaacatgaaacagcgacatttcaattaggttggcaccccgcgaaacctccatcctatgccgctaaactctaaaatt 8212340  T
Q  137 ttatt-nnnnnnngggaaaaatatatacaagaagaggggggactatgccaaaaccctcagaagaaaataaacagaaaaa 214  Q
    |||||        ||||||||||||||||| |||||||||||||| ||||||||||||  ||||||||||| |||||||    
T  8212341 ttattaaaaaaaagggaaaaatatatacaaaaagaggggggactaggccaaaaccctcgtaagaaaataaatagaaaaa 8212419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 64 - 202
Target Start/End: Original strand, 33325856 - 33325992
Alignment:
Q  64 gaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnnnnnnngggaaaaatatatac 163  Q
    |||||||||||||||| ||||||||| |||||  |||||||||| || |||||||||| |||||||||||||||||||       || ||||||||||||    
T  33325856 gaggaaacaccgacataccaactaggctggcat-ccgggaaacctccgtcctatgccgtcaaactctaaaattttattaaaaaaagg-aaaaatatatac 33325953  T
Q  164 aagaagaggggggactatgccaaaaccctcagaagaaaa 202  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  33325954 aagaagaggggggactaggccaaaaccctcagaagaaaa 33325992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 44 - 198
Target Start/End: Complemental strand, 14641521 - 14641368
Alignment:
Q  44 ggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnn 143  Q
    ||||||||||||  ||| |||||| |||||||||||||||||||||||||||| ||||||| || ||||||||||||||||| |||||||| ||||||      
T  14641521 ggagagaggacaaacatcaagagggaacaccgacatcccaactaggttggcaccccgggaaccctccatcctatgccgccaatctctaaaactttatt-a 14641423  T
Q  144 nnnnngggaaaaatatatacaagaagaggggggactatgccaaaaccctcagaag 198  Q
         ||||||||  | |||||||||||||||||||| |||||||||||| ||||    
T  14641422 aaaaagggaaaaaactgtacaagaagaggggggactaggccaaaaccctctgaag 14641368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 20899051 - 20898950
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttta 139  Q
    |||||||||||||||| |||| |||||| |||||||||||||||||||||||||||| || ||||||| ||| ||||||| ||||||||||||||| |||    
T  20899051 gcaaggagagaggacaagcatcaagaggcaacaccgacatcccaactaggttggcaccccaggaaacctccaccctatgctgccaaactctaaaatatta 20898952  T
Q  140 tt 141  Q
    ||    
T  20898951 tt 20898950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 44 - 197
Target Start/End: Complemental strand, 13565998 - 13565841
Alignment:
Q  44 ggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt-- 141  Q
    ||||||||||||||||| |||||| |||| |||||||||||||||||||||||| |  |||||| | ||||||| |||||||||||||||| ||||||      
T  13565998 ggagagaggacatgcatcaagagggaacaacgacatcccaactaggttggcacatcaagaaacctctatcctataccgccaaactctaaaaatttattaa 13565899  T
Q  142 --nnnnnnngggaaaaatatatacaagaagaggggggactatgccaaaaccctcagaa 197  Q
              || ||||||| ||||||||||||||||| || ||||||||||||||||    
T  13565898 aaaaaaaaaagggaaaatatgtacaagaagaggggggattaggccaaaaccctcagaa 13565841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 9351116 - 9351214
Alignment:
Q  43 aggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt 141  Q
    ||||||| |||||||||| || ||  |||| ||||||||||||||||||||||| ||| |||||| |||||||||||||||||| ||||||||||||||    
T  9351116 aggagagtggacatgcatcaatagacaacatcgacatcccaactaggttggcaccccgagaaacctccatcctatgccgccaaattctaaaattttatt 9351214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 13575086 - 13574997
Alignment:
Q  44 ggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaa 133  Q
    ||||||| ||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||  |||||||| ||||||| |||||||    
T  13575086 ggagagaagacatgcatcaagagggaacaccgacatcccaactaggttggcactccgggaaaccttcatcctataccgccaatctctaaa 13574997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 13577625 - 13577536
Alignment:
Q  44 ggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaa 133  Q
    ||||||| ||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||  |||||||| ||||||| |||||||    
T  13577625 ggagagaagacatgcatcaagagggaacaccgacatcccaactaggttggcactccgggaaaccttcatcctataccgccaatctctaaa 13577536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 40 - 193
Target Start/End: Complemental strand, 12436043 - 12435888
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttta 139  Q
    ||||||||||||||||||||| | |||| | || ||||||||||||||||||||||| |||  ||||| ||||||||||||||||| ||| |||| ||||    
T  12436043 gcaaggagagaggacatgcatcaggaggcatcatcgacatcccaactaggttggcaccccgacaaacctccatcctatgccgccaagctcaaaaaattta 12435944  T
Q  140 ttnnnnnnnggg--aaaaatatatacaagaagaggggggactatgccaaaaccctc 193  Q
    ||       |||  ||| |||| ||||| | ||||||||||||| |||||||||||    
T  12435943 ttaaaaaagggggaaaagatatttacaaaaggaggggggactataccaaaaccctc 12435888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 194
Target Start/End: Original strand, 15141904 - 15142045
Alignment:
Q  51 ggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnnnnnnngg 150  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||  ||||||||||  |||| | ||||||||| ||| |||| ||||||       ||    
T  15141904 ggacgtgcatcaagaggaaacaccgacatcccaactaggttggcaacccgggaaacctgcatcgtctgccgccaacctc-aaaactttattaaacaaagg 15142002  T
Q  151 g-aaaaatatatacaagaagaggggggactatgccaaaaccctca 194  Q
    | |||||||||||||  |||||||||||||| |||||||||||||    
T  15142003 gaaaaaatatataca--aagaggggggactaggccaaaaccctca 15142045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 197
Target Start/End: Original strand, 26592511 - 26592667
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttta 139  Q
    |||||||||||| |||||||| |||||  ||||| ||||| ||||||||||||| ||   |||||||| |||||||||||||||||||||||||  ||||    
T  26592511 gcaaggagagagaacatgcatcaagagagaacactgacattccaactaggttggtaccttgggaaacctccatcctatgccgccaaactctaaatattta 26592610  T
Q  140 ttnnnnnnngggaaaaatatatacaagaagaggggggactatgccaaaaccctcagaa 197  Q
    ||       |||  |||| | |||||||||| ||||||||| ||||| ||||||||||    
T  26592611 ttaaaaaaaggg-gaaatctgtacaagaagatgggggactaggccaagaccctcagaa 26592667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 44 - 211
Target Start/End: Complemental strand, 13570550 - 13570381
Alignment:
Q  44 ggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt-- 141  Q
    ||||||||||||||||| |||||| |||||| ||||||||||||| ||||||| ||| |||||   |||||||| |||| ||||||||||  ||||||      
T  13570550 ggagagaggacatgcatcaagagggaacacctacatcccaactagattggcaccccgagaaacattcatcctataccgcaaaactctaaagatttattaa 13570451  T
Q  142 -nnnnnnngggaaaaatatatacaagaagaggggggactatgccaaaaccctcagaagaaaataaacagaa 211  Q
            ||| ||||||| ||||||||||||| |||||| ||||| |||||||||| |||| ||||||||    
T  13570450 aaaaaaaaggggaaaatatgtacaagaagagggaggactaggccaagaccctcagaa-aaaacaaacagaa 13570381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 40 - 134
Target Start/End: Original strand, 14372175 - 14372269
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaa 134  Q
    |||||||||  |||||  ||| |||||| |||| ||||||||||||||||||||||| ||| |||| | ||||||||||||||||||||||||||    
T  14372175 gcaaggagaatggacagacatcaagaggcaacatcgacatcccaactaggttggcactccgagaaatctccatcctatgccgccaaactctaaaa 14372269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 64 - 199
Target Start/End: Original strand, 17112236 - 17112370
Alignment:
Q  64 gaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnnnnnnngggaaaaatatatac 163  Q
    ||||||||||||||||  ||||||| ||||||  |||||||||| |||||||| | ||||||| | ||||||||||||        ||||||||||||||    
T  17112236 gaggaaacaccgacatatcaactagattggcattccgggaaacctccatcctacgtcgccaaattttaaaattttattaaaaaaa-ggaaaaatatatac 17112334  T
Q  164 aagaagaggggggactatgccaaaaccctcagaaga 199  Q
    |||||||||||| ||||  |||||||| ||||||||    
T  17112335 aagaagagggggcactagaccaaaaccgtcagaaga 17112370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 24617733 - 24617796
Alignment:
Q  51 ggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcc 114  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| ||||||    
T  24617733 ggacatgcatcaagaggaaacaccgacatcccaactaggttggcaccccggaaaacctccatcc 24617796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 1110542 - 1110444
Alignment:
Q  43 aggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt 141  Q
    |||||| ||||||| ||| ||||||||||| ||||||||||  || |||||||| ||| |||||| ||||||| ||||||||||||| ||||| |||||    
T  1110542 aggagaaaggacatacatcaagaggaaacaacgacatcccatttaagttggcactccgcgaaacctccatcctttgccgccaaactcaaaaatattatt 1110444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 32569919 - 32569817
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactcta-aaatttt 138  Q
    ||||||||||||||||  ||| |||||| |||| ||||||||||||||| ||| |||  || |||||| | ||||||||||||||||||||| |||||||    
T  32569919 gcaaggagagaggacagtcattaagaggcaacatcgacatcccaactagattgacacctcgagaaacctctatcctatgccgccaaactctagaaatttt 32569820  T
Q  139 att 141  Q
    |||    
T  32569819 att 32569817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 3057026 - 3056937
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc 129  Q
    |||||||||| ||||| |||| |||||  |||| |||||||||||||| ||||| || ||| |||||| |||||||||||||||||||||    
T  3057026 gcaaggagagtggacaggcatcaagagacaacatcgacatcccaactaagttggtaccccgagaaacctccatcctatgccgccaaactc 3056937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 34338085 - 34338169
Alignment:
Q  42 aaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaa 126  Q
    ||||||||| ||||  ||| |||||||| || ||||||||||||||||||||||| ||| || ||| ||||||||||||||||||    
T  34338085 aaggagagatgacagccatcaagaggaatcatcgacatcccaactaggttggcaccccgagagacctccatcctatgccgccaaa 34338169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 8483632 - 8483698
Alignment:
Q  51 ggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctat 117  Q
    |||||||||| |||||||||||| |||||||||||||||||||||| ||||| |||| | |||||||    
T  8483632 ggacatgcatcaagaggaaacacggacatcccaactaggttggcaccccggggaacctctatcctat 8483698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 194
Target Start/End: Complemental strand, 20589719 - 20589572
Alignment:
Q  43 aggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt- 141  Q
    |||||| |||||| |||| |||||| | | |||||||| ||||||||||||||| ||||  |||| |||||||||||||||| |||| ||||| |||||     
T  20589719 aggagaaaggacaggcatcaagagggacctccgacatctcaactaggttggcaccccggagaacctccatcctatgccgccagactc-aaaatattatta 20589621  T
Q  142 nnnnnnngggaaaaatatatacaagaagaggggggactatgccaaaaccctca 194  Q
           |||||||||||||||||||    ||||||||| |||||||||||||    
T  20589620 aaaaaaagggaaaaatatatacaaga----gggggactaggccaaaaccctca 20589572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 134
Target Start/End: Original strand, 24127813 - 24127907
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaa 134  Q
    ||||| ||||||||||  ||| |||||| | || |||||||||| ||||||||||||  || |||||| ||||||||||||||||||||| ||||    
T  24127813 gcaagaagagaggacagacatcaagaggtatcatcgacatcccagctaggttggcacctcgagaaacctccatcctatgccgccaaactcgaaaa 24127907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 26522780 - 26522711
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactct--aaaattttatt 141  Q
    ||||||||||||||||||||||| ||| || ||| ||||||||||||||||||||||  |||||||||||    
T  26522780 cgacatcccaactaggttggcaccccgagagacctccatcctatgccgccaaactctagaaaattttatt 26522711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 9696847 - 9696948
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttta 139  Q
    |||||||||||||||| |||| |  ||  | || |||||||||||||| |||||||| ||| || ||| ||||||||||||||||||||| |||| ||||    
T  9696847 gcaaggagagaggacaggcatcagaagtcatcatcgacatcccaactaagttggcacgccgagatacctccatcctatgccgccaaactcgaaaaattta 9696946  T
Q  140 tt 141  Q
    ||    
T  9696947 tt 9696948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 18306717 - 18306817
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttta 139  Q
    |||||||||||||||| |||| | |||  | || ||||||||||||||||||||||| ||| || ||| ||||||||||||| ||||||| |||| ||||    
T  18306717 gcaaggagagaggacaggcatcaggagtcatcatcgacatcccaactaggttggcac-ccgagatacctccatcctatgccgtcaaactcgaaaaattta 18306815  T
Q  140 tt 141  Q
    ||    
T  18306816 tt 18306817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 141
Target Start/End: Complemental strand, 24373599 - 24373503
Alignment:
Q  45 gagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt 141  Q
    |||| ||||||||||| | |||||| ||| ||||||||||||||||||| || | ||  |||| ||||||||||||||||| ||| ||||| |||||    
T  24373599 gagaaaggacatgcatcacgaggaagcactgacatcccaactaggttggtaccctggagaacctccatcctatgccgccaatctcaaaaatattatt 24373503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 194
Target Start/End: Complemental strand, 30492381 - 30492279
Alignment:
Q  90 ttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnnnnnnnggg--aaaaatatatacaagaagaggggggactatgccaaa 187  Q
    |||||||||||| ||||| ||||||||||||||||||||| |||||||||||       |||  ||||||||||||   |||||||||||||| ||||||    
T  30492381 ttggcacaccggaaaacctccatcctatgccgccaaactc-aaaattttattaaaaaaaggggaaaaaatatatac---aagaggggggactaggccaaa 30492286  T
Q  188 accctca 194  Q
    |||||||    
T  30492285 accctca 30492279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 14982476 - 14982378
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttta 139  Q
    ||||||||||||||||  |   |||||| |||| ||||||||||||| ||||| |||  || |||||  ||||||||||||||||||||||||| |||||    
T  14982476 gcaaggagagaggacagac---aagaggcaacatcgacatcccaacttggttgacacctcgagaaacttccatcctatgccgccaaactctaaattttta 14982380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 841306 - 841383
Alignment:
Q  53 acatgcatgaagaggaaacaccgacatcccaactaggttggcacaccg-ggaaacccccatcctatgccgccaaactc 129  Q
    |||||||| | ||| |||||||||||||||||||| |||||||| ||| || |||| |||||||||| ||||||||||    
T  841306 acatgcatcatgagaaaacaccgacatcccaactaagttggcaccccgagggaacctccatcctatgtcgccaaactc 841383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 11319555 - 11319502
Alignment:
Q  43 aggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcac 96  Q
    |||||||||||||||||| |||||||| |||| ||||| |||||||||||||||    
T  11319555 aggagagaggacatgcatcaagaggaagcaccaacatctcaactaggttggcac 11319502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 135
Target Start/End: Complemental strand, 9344564 - 9344472
Alignment:
Q  43 aggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaat 135  Q
    |||||| | ||||| ||| ||||| ||||| ||||||||||||||||||||||| |||  ||||| ||| |||||||  |||||||| |||||    
T  9344564 aggagaaatgacatacatcaagagaaaacaacgacatcccaactaggttggcactccgcaaaacctccaccctatgcttccaaactcaaaaat 9344472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 141
Target Start/End: Original strand, 24353202 - 24353282
Alignment:
Q  62 aagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactcta-aaattttatt 141  Q
    |||||| |||| |||||| |||||||| ||||||| ||| |||||| | ||||| ||||||||||||||| ||||||||||    
T  24353202 aagagggaacatcgacataccaactagattggcaccccgagaaacctctatcctgtgccgccaaactctagaaattttatt 24353282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 1448873 - 1448790
Alignment:
Q  46 agagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc 129  Q
    |||||||| |||| | |||||||| ||||||||||| |||||||| |||||  |||  |||| | |||||||||||||||||||    
T  1448873 agagaggatatgcgtcaagaggaagcaccgacatcctaactaggtcggcaccacggagaacctctatcctatgccgccaaactc 1448790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 30884486 - 30884390
Alignment:
Q  43 aggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt 141  Q
    |||||||||||||||||| |||  ||| || ||||||||||||||||||| ||| |||  ||||  ||||||||| |||||||  ||| ||||||||||    
T  30884486 aggagagaggacatgcatcaaggagaatcaacgacatcccaactaggttgacaccccgataaacttccatcctataccgccaa--tctcaaattttatt 30884390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 11650900 - 11650839
Alignment:
Q  68 aaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc 129  Q
    ||||||| ||||||||||||||||||||| |  || |||| ||||| |||||||||||||||    
T  11650900 aaacacctacatcccaactaggttggcaccctagggaacctccatcttatgccgccaaactc 11650839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 15050036 - 15050081
Alignment:
Q  51 ggacatgcatgaagaggaaacaccgacatcccaactaggttggcac 96  Q
    |||||||||| ||||||||||| ||| |||||||||||||||||||    
T  15050036 ggacatgcatcaagaggaaacaacgatatcccaactaggttggcac 15050081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 20898929 - 20898888
Alignment:
Q  161 tacaagaagaggggggactatgccaaaaccctcagaagaaaa 202  Q
    ||||||||||||||| |||| |||||||||||||||||||||    
T  20898929 tacaagaagagggggaactaggccaaaaccctcagaagaaaa 20898888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 24205546 - 24205493
Alignment:
Q  43 aggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcac 96  Q
    ||||||||||||||||||  |||||||| | |||||||||||||| ||||||||    
T  24205546 aggagagaggacatgcatcgagaggaaagaacgacatcccaactaagttggcac 24205493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 10138926 - 10138871
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc 129  Q
    ||||||||||||||||||||||| ||| || ||| | ||||||| |||||||||||    
T  10138926 cgacatcccaactaggttggcaccccgagacacctctatcctataccgccaaactc 10138871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 22955814 - 22955759
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc 129  Q
    ||||||||||||||||||||||| ||| || | | ||||||| |||||||||||||    
T  22955814 cgacatcccaactaggttggcaccccgagacatcgccatcctttgccgccaaactc 22955759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 23832579 - 23832634
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc 129  Q
    ||||||||||||||||||||||| ||| || | | ||||||| |||||||||||||    
T  23832579 cgacatcccaactaggttggcaccccgagacatcgccatcctttgccgccaaactc 23832634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 27962066 - 27962121
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc 129  Q
    ||||||||||||||||||||||| ||| || | | |||||||||||||||| ||||    
T  27962066 cgacatcccaactaggttggcaccccgagacatctccatcctatgccgccagactc 27962121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 96
Target Start/End: Complemental strand, 22705382 - 22705348
Alignment:
Q  62 aagaggaaacaccgacatcccaactaggttggcac 96  Q
    |||||| ||||||||||||||||||||||||||||    
T  22705382 aagaggtaacaccgacatcccaactaggttggcac 22705348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 7242881 - 7242941
Alignment:
Q  57 gcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctat 117  Q
    |||| |||||||| |  ||||||||||||||||||||||| ||| | ||||||||| ||||    
T  7242881 gcatcaagaggaagcgacgacatcccaactaggttggcaccccgaggaacccccattctat 7242941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 8462062 - 8462014
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgc 122  Q
    |||||||||||||||||||||||  || || ||| ||||||||||||||    
T  8462062 cgacatcccaactaggttggcacctcgagagacctccatcctatgccgc 8462014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 10192907 - 10192847
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaa 134  Q
    ||||||||||| |||||||||||  |  || ||| |||||||||||||||| |||||||||    
T  10192907 cgacatcccaattaggttggcacctcaagagacctccatcctatgccgccacactctaaaa 10192847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 13580179 - 13580243
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttt 138  Q
    ||||||||| | ||||||||||| |||   |||||||||||||||||||||| |||  |||||||    
T  13580179 cgacatccccattaggttggcaccccgtagaacccccatcctatgccgccaacctcagaaatttt 13580243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 34214553 - 34214628
Alignment:
Q  52 gacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaact 128  Q
    |||||| || |||| |||| | |||||||||| |||||||||||  ||| |||| ||||||| ||||||||||||||    
T  34214553 gacatgtatcaagaagaaagaacgacatcccacctaggttggcatcccgtgaaa-ccccatcttatgccgccaaact 34214628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 50 - 214
Target Start/End: Original strand, 40926460 - 40926624
Alignment:
Q  50 aggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnnnnnnng 149  Q
    ||||||||||| | ||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| ||||||       |    
T  40926460 aggacatgcatcaggaggaaacatcgacatcccaactaggttggcaccccgggaaacctccatcctatgccgccaaactataaaa-tttatt-aaaaaag 40926557  T
Q  150 ggaaaaatatatacaagaagaggggggactatgccaaaaccctc--agaagaaaataaacagaaaaa 214  Q
    |||||||||||||||||||||||||||| || ||||||||| ||  |||| ||||||||||||||||    
T  40926558 ggaaaaatatatacaagaagaggggggattaggccaaaaccatcaaagaaaaaaataaacagaaaaa 40926624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 64 - 202
Target Start/End: Complemental strand, 17151360 - 17151222
Alignment:
Q  64 gaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt-nnnnnnngggaaaaatatata 162  Q
    |||||||||| ||||| |||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||        || |||||||||||    
T  17151360 gaggaaacactgacatgccaactaggttggcactccgggaaacctccatcctatgccgccaaactct-aaattttattaaaaaaaaggaaaaaatatata 17151262  T
Q  163 caagaagaggggggactatgccaaaaccctcagaagaaaa 202  Q
    ||||||||| |||||||| || |||||||| | |||||||    
T  17151261 caagaagagaggggactaggcaaaaaccctaaaaagaaaa 17151222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 67 - 194
Target Start/End: Original strand, 24270833 - 24270959
Alignment:
Q  67 gaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnnnnnnngggaaaaatatatacaag 166  Q
    ||||||| ||||||||||||||||||||||  ||||||||| ||||||||||| | |||||||||||||||||||       ||| ||||| | ||||||    
T  24270833 gaaacactgacatcccaactaggttggcactgcgggaaacctccatcctatgctgtcaaactctaaaattttattaaaaaaaggg-aaaatctgtacaag 24270931  T
Q  167 aagaggggggactatgccaaaaccctca 194  Q
    |||||||||||||| ||||| |||||||    
T  24270932 aagaggggggactaggccaataccctca 24270959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 194
Target Start/End: Complemental strand, 24297403 - 24297277
Alignment:
Q  67 gaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnnnnnnngggaaaaatatatacaag 166  Q
    ||||||| ||||||||||||||||||||||  ||||||||| ||||||||||| | |||||| ||||||||||||       ||| ||||| | ||||||    
T  24297403 gaaacactgacatcccaactaggttggcactgcgggaaacctccatcctatgctgtcaaactttaaaattttattaaaaaaaggg-aaaatctgtacaag 24297305  T
Q  167 aagaggggggactatgccaaaaccctca 194  Q
    |||||||||||||| ||||| |||||||    
T  24297304 aagaggggggactaggccaataccctca 24297277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 134
Target Start/End: Original strand, 36802254 - 36802348
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaa 134  Q
    |||||||||||||||  | || |||||| |||| ||||||| ||||||||||||||| ||| |||||| ||||||||||||||||||||||||||    
T  36802254 gcaaggagagaggacgggtattaagaggcaacatcgacatctcaactaggttggcaccccgagaaacctccatcctatgccgccaaactctaaaa 36802348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 44 - 141
Target Start/End: Original strand, 17377499 - 17377596
Alignment:
Q  44 ggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt 141  Q
    |||||| |||||||||| |||||| |||| ||| ||| ||||||||||||||| ||  |||||| |||||||||| |||||||||||||||| |||||    
T  17377499 ggagagtggacatgcatcaagaggcaacaacgatatctcaactaggttggcaccccaagaaacctccatcctatgacgccaaactctaaaatattatt 17377596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 51 - 141
Target Start/End: Original strand, 20434182 - 20434275
Alignment:
Q  51 ggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc---taaaattttatt 141  Q
    |||||||||| ||| | ||||| ||||||| ||||||||||||||| |||  |||||||||||||||||||||||||||   ||||||||||||    
T  20434182 ggacatgcattaagggtaaacaacgacatcacaactaggttggcaccccgcaaaacccccatcctatgccgccaaactcagataaaattttatt 20434275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 12102898 - 12102796
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaa-atttt 138  Q
    ||||||||||||||||| ||| |||||| |||| |||||||||||||| ||||| |  ||| |||| |  |||||||||||||||||||||||| |||||    
T  12102898 gcaaggagagaggacatacatcaagaggcaacatcgacatcccaactatgttggtatcccgagaaatcttcatcctatgccgccaaactctaaagatttt 12102799  T
Q  139 att 141  Q
    |||    
T  12102798 att 12102796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 20477514 - 20477420
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaa 134  Q
    ||||||||| ||||||  ||| |||||| | || ||||||||||||||||||||||| ||| || ||| ||||||||||||| ||||||||||||    
T  20477514 gcaaggagaaaggacagacatcaagaggcatcatcgacatcccaactaggttggcaccccgagatacctccatcctatgccgtcaaactctaaaa 20477420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 191
Target Start/End: Complemental strand, 28948931 - 28948810
Alignment:
Q  69 aacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgcc-gccaaactctaaaattttattnnnnnnngggaaaaatatatacaaga 167  Q
    ||||||||||||||||||| |||||||| |||||||||| || |||| |||| |||||||||||||| ||||||        | ||||||||||||| |     
T  28948931 aacaccgacatcccaactatgttggcaccccgggaaacctccgtcctctgcctgccaaactctaaaaatttattaataaa--gaaaaaatatatacatgg 28948834  T
Q  168 agaggggggactatgccaaaaccc 191  Q
    ||||||||||||| ||||||||||    
T  28948833 agaggggggactaggccaaaaccc 28948810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 43 - 193
Target Start/End: Complemental strand, 28522938 - 28522789
Alignment:
Q  43 aggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt- 141  Q
    |||||||||||||  ||| |||||||||||  |||||||||||||||||||||| |  |  |||| |||||||||||||||||  ||| ||||||||||     
T  28522938 aggagagaggacagacatcaagaggaaacattgacatcccaactaggttggcaccctagagaacctccatcctatgccgccaa--tctcaaattttatta 28522841  T
Q  142 --nnnnnnngggaaaaatatatacaagaagaggggggactatgccaaaaccctc 193  Q
             ||||||||||||||||  |||||||||||||| ||||||||||||    
T  28522840 aaaaaaatggggaaaaatatataca--aagaggggggactaggccaaaaccctc 28522789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 38376856 - 38376955
Alignment:
Q  43 aggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc-taaaattttatt 141  Q
    ||||||| |||||||||| |||||| | || |||||||| ||||||||||||||  || ||  || ||||||||||||||||||||| ||||||||||||    
T  38376856 aggagagtggacatgcatcaagaggtatcatcgacatcctaactaggttggcacctcgagaggcctccatcctatgccgccaaactcataaaattttatt 38376955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 130
Target Start/End: Original strand, 22169955 - 22170045
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactct 130  Q
    |||||||||||||||| |||| |||||| | || | ||||||||| ||||||||||  ||| || ||| ||||||||||||||||||||||    
T  22169955 gcaaggagagaggacaggcatcaagaggcatcatcaacatcccaattaggttggcatcccgagagacctccatcctatgccgccaaactct 22170045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 21565923 - 21565846
Alignment:
Q  64 gaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt 141  Q
    |||||||||| ||||| |||||||||||||||  |||| ||||| || |||||||||| ||||||||| |||||||||    
T  21565923 gaggaaacactgacattccaactaggttggcatcccggaaaacctccgtcctatgccgtcaaactctacaattttatt 21565846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 194
Target Start/End: Complemental strand, 30419033 - 30418911
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctat-gccgccaaactctaaaattttattnnnnnnnggg-aaaaatatatacaagaagag 171  Q
    |||||||||||||||||||||||  |||||| || || |||||| |||| | |||||||||||||||||       ||| ||||| |||||||||  |||    
T  30419033 cgacatcccaactaggttggcaccacgggaatcctccgtcctatggccgtctaactctaaaattttattaaaaaaagggaaaaaaaatatacaaggggag 30418934  T
Q  172 gggggactatgccaaaaccctca 194  Q
    ||||||||| |||||||||||||    
T  30418933 gggggactaggccaaaaccctca 30418911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 192
Target Start/End: Complemental strand, 29216692 - 29216539
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaa-atttt 138  Q
    ||||||||||||||||||||| |||||| | || ||||||||||| || ||||||||   | || ||| ||||||||| ||||||||||| ||| |||||    
T  29216692 gcaaggagagaggacatgcatcaagaggcatcatcgacatcccaattaagttggcacctagagagacctccatcctataccgccaaactcaaaagatttt 29216593  T
Q  139 attnnnnnnngggaaaaatatatacaagaagaggggggactatgccaaaaccct 192  Q
    |||       | ||||||||| ||||| | |||||||||||   ||||||||||    
T  29216592 attaaaaagggagaaaaatatttacaaaaggaggggggacttgaccaaaaccct 29216539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 192
Target Start/End: Complemental strand, 29329991 - 29329838
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaa-atttt 138  Q
    ||||||||||||||||||||| |||||| | || ||||||||||| || ||||||||   | || ||| ||||||||| ||||||||||| ||| |||||    
T  29329991 gcaaggagagaggacatgcatcaagaggcatcatcgacatcccaattaagttggcacctagagagacctccatcctataccgccaaactcaaaagatttt 29329892  T
Q  139 attnnnnnnngggaaaaatatatacaagaagaggggggactatgccaaaaccct 192  Q
    |||       | ||||||||| ||||| | |||||||||||   ||||||||||    
T  29329891 attaaaaagggagaaaaatatttacaaaaggaggggggacttgaccaaaaccct 29329838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 132
Target Start/End: Complemental strand, 34454979 - 34454887
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaa 132  Q
    |||||||||||||| | |||| |||||  | || ||||||||||| ||||||||||| ||| || | | ||||||||||||||||||||||||    
T  34454979 gcaaggagagaggagaggcatcaagagacatcatcgacatcccaattaggttggcaccccgagacatctccatcctatgccgccaaactctaa 34454887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 38242124 - 38242225
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttta 139  Q
    |||| ||||| ||||| |||| ||| || | || ||||||||||||||||||||||| ||| || |||  ||||||||||||||| |||| |||| ||||    
T  38242124 gcaatgagagtggacaagcatcaagcggtatcatcgacatcccaactaggttggcaccccgagacaccttcatcctatgccgccacactcgaaaaattta 38242223  T
Q  140 tt 141  Q
    ||    
T  38242224 tt 38242225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 13619093 - 13619165
Alignment:
Q  50 aggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgc 122  Q
    ||||||||||| ||||||||||||  ||||||||||||||||||||   |||  |||| ||||||||||||||    
T  13619093 aggacatgcatcaagaggaaacactaacatcccaactaggttggcaactcggagaacctccatcctatgccgc 13619165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 194
Target Start/End: Original strand, 24440001 - 24440121
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccg-ccaaactctaaaattttattnnnnnnngggaaaaatatatacaagaagagg 172  Q
    ||||||||||||||||||||||  || ||||||| || |||| | ||  ||||||||| ||| ||||||       || ||||||||||||||| |||||    
T  24440001 cgacatcccaactaggttggcat-cctggaaacctccgtcctctacccaccaaactcttaaaatttattaataaagggaaaaaatatatacaaggagagg 24440099  T
Q  173 ggggactatgccaaaaccctca 194  Q
     |||||||||||||||||||||    
T  24440100 tgggactatgccaaaaccctca 24440121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 32234445 - 32234517
Alignment:
Q  70 acaccgacatcccaactaggttggcacaccgggaaacccccatcctatgcc-gccaaactctaaaattttatt 141  Q
    |||||||||||||||||||||||||||  |||||| || || ||||||||| | | |||||||||||||||||    
T  32234445 acaccgacatcccaactaggttggcacctcgggaagcctccgtcctatgcctgtctaactctaaaattttatt 32234517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 6083802 - 6083735
Alignment:
Q  62 aagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc 129  Q
    ||||||||||||||||||||| ||||||||||||   ||| ||||| ||||| ||||||| |||||||    
T  6083802 aagaggaaacaccgacatcccgactaggttggcatctcggaaaacctccatcatatgccgtcaaactc 6083735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 134
Target Start/End: Original strand, 17679703 - 17679797
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaa 134  Q
    |||||||||| |||||  ||| ||| || | || ||||||||||||||||||||||| ||| || ||| |||||||||||| ||| |||| ||||    
T  17679703 gcaaggagagtggacaaacatcaagcggcatcatcgacatcccaactaggttggcaccccgagacacctccatcctatgccaccacactcgaaaa 17679797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 28698282 - 28698188
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaa 134  Q
    ||||||||||||||||  ||| ||| || |||| |||||| |||| ||||||||||  ||| |||||  | |||||| |||||||||||||||||    
T  28698282 gcaaggagagaggacaaacattaaggggtaacatcgacattccaattaggttggcatcccgagaaacatctatcctaagccgccaaactctaaaa 28698188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 17678312 - 17678372
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaa 134  Q
    ||||||||||| |||||||||||  || || ||| |||||||||||||||| |||||||||    
T  17678312 cgacatcccaattaggttggcacctcgagagacctccatcctatgccgccacactctaaaa 17678372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 20374140 - 20374210
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc---taaaattttatt 141  Q
    ||||||||||||||||||| ||| |||   |||||||||||||||| |||||||||   ||||||||||||    
T  20374140 cgacatcccaactaggttgccaccccgcagaacccccatcctatgctgccaaactcagataaaattttatt 20374210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 24524099 - 24524154
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc 129  Q
    ||||||||||||||||||||||| ||| || | | |||||||||||||||| ||||    
T  24524099 cgacatcccaactaggttggcaccccgagacatctccatcctatgccgccagactc 24524154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 26916683 - 26916628
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc 129  Q
    ||||||||||||||||||||||| ||| || | | |||||||||||||||| ||||    
T  26916683 cgacatcccaactaggttggcaccccgagacatctccatcctatgccgccagactc 26916628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 194
Target Start/End: Complemental strand, 1490710 - 1490591
Alignment:
Q  73 ccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt--nnnnnnngggaaaaatatatacaagaaga 170  Q
    |||||||||||||||||||| ||| ||||  |||| |||||||| |||||||| ||| ||||| |||||         |||||||||||||||   ||||    
T  1490710 ccgacatcccaactaggttgtcaccccggagaacctccatcctacgccgccaagctc-aaaatattattaaaaaaaaggggaaaaatatatac---aaga 1490615  T
Q  171 ggggggactatgccaaaaccctca 194  Q
    |||||||||| ||||| |||||||    
T  1490614 ggggggactaggccaagaccctca 1490591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 16110058 - 16110091
Alignment:
Q  167 aagaggggggactatgccaaaaccctcagaagaa 200  Q
    |||||||||||||| |||||||||||||||||||    
T  16110058 aagaggggggactaggccaaaaccctcagaagaa 16110091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 20428712 - 20428668
Alignment:
Q  149 gggaaaaatatatacaagaagaggggggactatgccaaaaccctca 194  Q
    ||||||||||| ||||| |||||||||||||| |||||||||||||    
T  20428712 gggaaaaatatgtacaa-aagaggggggactaggccaaaaccctca 20428668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 27206407 - 27206452
Alignment:
Q  76 acatcccaactaggttggcacaccgggaaacccccatcctatgccg 121  Q
    ||||||||||||||||||||| |||   ||||||||||||||||||    
T  27206407 acatcccaactaggttggcaccccgcagaacccccatcctatgccg 27206452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 24933718 - 24933750
Alignment:
Q  72 accgacatcccaactaggttggcacaccgggaa 104  Q
    ||||||||||||||||||||||||| |||||||    
T  24933718 accgacatcccaactaggttggcactccgggaa 24933750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 39 - 202
Target Start/End: Original strand, 1482 - 1646
Alignment:
Q  39 ggcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttt 138  Q
    ||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||  |||||||||||||| ||    
T  1482 ggcaaggagagaggacaagcatcaagaggcaacaccgacatcccaactaggttggcaccccgggaaacctccatcctatgcttccaaactctaaaatatt 1581  T
Q  139 att-nnnnnnngggaaaaatatatacaagaagaggggggactatgccaaaaccctcagaagaaaa 202  Q
    |||        |||  |||  | |||||||||||||||||||| |||||||||||||||||||||    
T  1582 attaaaaaaaggggggaaaactttacaagaagaggggggactaggccaaaaccctcagaagaaaa 1646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 36 - 199
Target Start/End: Original strand, 41574284 - 41574446
Alignment:
Q  36 ctaggcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaat 135  Q
    ||||||||||||| ||||||  ||| || |||||||||| ||||||||||||||||| ||| || ||||||| |||||||||||||||||||||||||||    
T  41574284 ctaggcaaggagaaaggacagacatcaaaaggaaacaccaacatcccaactaggttgacac-cctggaaacctccatcctatgccgccaaactctaaaat 41574382  T
Q  136 tttattnnnnnnngggaaaaatatatacaagaagaggggggactatgccaaaaccctcagaaga 199  Q
    ||||||        |||||||||||||||||||||||| ||||||  |||||||| ||||||||    
T  41574383 tttattaaaaaaaaggaaaaatatatacaagaagagggcggactagaccaaaaccttcagaaga 41574446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 68 - 202
Target Start/End: Original strand, 12629266 - 12629400
Alignment:
Q  68 aaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnnnnnnngggaaaaatatatacaaga 167  Q
    ||||||||||||||||||||| ||||||  |||||||||| || ||||||||||||||||||||||||||||||         |||||||||||||||||    
T  12629266 aaacaccgacatcccaactagattggcatcccgggaaacctccgtcctatgccgccaaactctaaaattttattaaaaaaaaagaaaaatatatacaaga 12629365  T
Q  168 agaggggggactatgccaaaaccctcagaagaaaa 202  Q
    |||||||||| || |||||||||||||||||||||    
T  12629366 agaggggggattaggccaaaaccctcagaagaaaa 12629400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 36 - 140
Target Start/End: Original strand, 34528904 - 34529008
Alignment:
Q  36 ctaggcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaat 135  Q
    |||||||||||||||| ||  |||| ||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  34528904 ctaggcaaggagagagaacgggcatcaagaggaaacagcgacatcccaactaggttggcaccccgggaaacctccatcctatgccgccaaactctaaaat 34529003  T
Q  136 tttat 140  Q
    |||||    
T  34529004 tttat 34529008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 39 - 199
Target Start/End: Original strand, 43021723 - 43021884
Alignment:
Q  39 ggcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccggg-aaacccccatcctatgccgccaaactctaaaattt 137  Q
    ||||| |||||||||||||||| ||||| |||||||||||  |||  ||||||||||| ||||| ||||| |||||||||||||||||||||||||||||    
T  43021723 ggcaatgagagaggacatgcatcaagagaaaacaccgacaaaccacttaggttggcaccccggggaaacctccatcctatgccgccaaactctaaaattt 43021822  T
Q  138 tattnnnnnnngggaaaaatatatacaagaagaggggggactatgccaaaaccctcagaaga 199  Q
    ||||       || ||||||||||||| ||||||||||||||| ||||||| ||||| ||||    
T  43021823 tattaaaagggggaaaaaatatatacaggaagaggggggactaggccaaaatcctcataaga 43021884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 36 - 206
Target Start/End: Original strand, 10032073 - 10032238
Alignment:
Q  36 ctaggcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaat 135  Q
    |||||||||||||  ||||| |||| |||||||||||||||||||||||||||||||  || |||| ||| |  |||||||||||||| |||||||||||    
T  10032073 ctaggcaaggagaagggacaggcatcaagaggaaacaccgacatcccaactaggttgataccccggaaaaacttcatcctatgccgcc-aactctaaaat 10032171  T
Q  136 tttattnnnnnnngggaaaaatatatacaagaagaggggggactatgccaaaaccctcagaagaaaataaa 206  Q
     |||||        |||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||    
T  10032172 attattaaaa----ggaaaaatatgtacaagaagaggggggactaggccaaaaccctcggaagaaaataaa 10032238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 64 - 202
Target Start/End: Complemental strand, 19100349 - 19100213
Alignment:
Q  64 gaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnnnnnnngggaaaaatatatac 163  Q
    ||||||||| |||||| |||||||||||||||  |||||||||| || |||||||||| |||||||||||||||||||        ||||||||||||||    
T  19100349 gaggaaacatcgacataccaactaggttggcat-ccgggaaaccaccgtcctatgccgtcaaactctaaaattttattaaaaaaa-ggaaaaatatatac 19100252  T
Q  164 aagaagaggggggactatgccaaaaccctcagaagaaaa 202  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  19100251 aagaagagggggaactaggccaaaaccctcagaagaaaa 19100213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 64 - 202
Target Start/End: Complemental strand, 32943815 - 32943678
Alignment:
Q  64 gaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnnnnnnngggaaaaatatatac 163  Q
    |||||||||||||||| |||| ||||||||||  |||||||||| || || ||||||||||||||| |||| ||||||        ||||||||||||||    
T  32943815 gaggaaacaccgacataccaattaggttggcat-ccgggaaacctccgtcttatgccgccaaactcaaaaaatttattaaaaaaaaggaaaaatatatac 32943717  T
Q  164 aagaagaggggggactatgccaaaaccctcagaagaaaa 202  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  32943716 aagaagaggggggactaggccaaaaccctcagaagaaaa 32943678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 65 - 193
Target Start/End: Complemental strand, 28016060 - 28015932
Alignment:
Q  65 aggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnnnnnnngggaaaaatatataca 164  Q
    ||||||||||||||||||||||| |||| ||| || ||||| | || |||||| |||||||||| ||||||||||||       ||||||||||||||||    
T  28016060 aggaaacaccgacatcccaactaagttgacaccccaggaaatctccgtcctattccgccaaactataaaattttattaaaaaaagggaaaaatatataca 28015961  T
Q  165 agaagaggggggactatgccaaaaccctc 193  Q
    |||||||||||||||| ||||||||||||    
T  28015960 agaagaggggggactaggccaaaaccctc 28015932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 40 - 206
Target Start/End: Complemental strand, 19088963 - 19088796
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactct-aaaatttt 138  Q
    ||||||||||||||||||||| |||||||||||| |||||| ||| |||||||| ||   |||||||| ||||| |||||||||||||||| |||| |||    
T  19088963 gcaaggagagaggacatgcatcaagaggaaacactgacatctcaattaggttggaaccttgggaaacctccatcttatgccgccaaactctaaaaaattt 19088864  T
Q  139 attnnnnnnngggaaaaatatatacaagaagaggggggactatgccaaaaccctcagaagaaaataaa 206  Q
    |||       |||  |||||| ||||||||||||||||| || | ||||||||||| |||||||||||    
T  19088863 attaaaaaaaggggtaaatatgtacaagaagaggggggattaggtcaaaaccctcaaaagaaaataaa 19088796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 64 - 202
Target Start/End: Original strand, 34507883 - 34508020
Alignment:
Q  64 gaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnnnnnnngggaaaaatatatac 163  Q
    ||||||| || ||||| |||||||||||||||  | |||||||| || |||||||| |||||||||||||||||||||       || ||||||||||||    
T  34507883 gaggaaatactgacataccaactaggttggcattc-gggaaacctccgtcctatgcagccaaactctaaaattttattaaaaaaagg-aaaaatatatac 34507980  T
Q  164 aagaagagggggg-actatgccaaaaccctcagaagaaaa 202  Q
    ||||||||||||| |||| |||||||||||||||||||||    
T  34507981 aagaagagggggggactaggccaaaaccctcagaagaaaa 34508020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 10423790 - 10423891
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttta 139  Q
    |||||||||| ||||| |||| |||||| |||| ||||||||||||||||||||||| ||| |||||| ||||| ||||||  |||||||||||||||||    
T  10423790 gcaaggagagtggacaagcatcaagaggcaacatcgacatcccaactaggttggcaccccgagaaacctccatcttatgccctcaaactctaaaatttta 10423889  T
Q  140 tt 141  Q
    ||    
T  10423890 tt 10423891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 51 - 194
Target Start/End: Original strand, 19054385 - 19054525
Alignment:
Q  51 ggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt-nnnnnnng 149  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||| | |||| ||||  ||||||||||        |    
T  19054385 ggacatgcatcaagaggaaacaccgacatcccaactaggttggcaccccggggaacctccatcctatacagccacactc--aaattttattaaaaaaggg 19054482  T
Q  150 ggaaaaatatatacaagaagaggggggactatgccaaaaccctca 194  Q
    |||||||||  ||||  |||||||||||||| |||||||||||||    
T  19054483 ggaaaaataattaca--aagaggggggactaggccaaaaccctca 19054525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 18332693 - 18332790
Alignment:
Q  43 aggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt 141  Q
    |||||| | |||| |||| ||||| ||||| ||||||||||||||||||||||| ||||  |||| ||||||||||||||||||||| |||||||||||    
T  18332693 aggagaaaagacaagcattaagagaaaacatcgacatcccaactaggttggcaccccggagaacctccatcctatgccgccaaactc-aaaattttatt 18332790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 42 - 194
Target Start/End: Original strand, 27035843 - 27035997
Alignment:
Q  42 aaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaa-attttat 140  Q
    |||||||||||||| |||| |||||| | || ||||||||||||||||||||||  ||| || ||| ||||||||||||||||||||| ||| |||||||    
T  27035843 aaggagagaggacaagcatcaagaggcatcatcgacatcccaactaggttggcatcccgagagacctccatcctatgccgccaaactcaaaagattttat 27035942  T
Q  141 t-nnnnnnngggaaaaatatatacaagaagaggggggactatgccaaaaccctca 194  Q
    |        ||| ||||||| ||||| | ||||||||||||  ||||||||||||    
T  27035943 taaaaacggggggaaaatatttacaaaaggaggggggactagaccaaaaccctca 27035997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 70 - 194
Target Start/End: Complemental strand, 31893173 - 31893046
Alignment:
Q  70 acaccgacatcccaactaggttggcacaccgggaaacccccatcctatg-ccgccaaactctaaaattttattnnnnnnnggg--aaaaatatatacaag 166  Q
    ||||||||||||||||||||||||||  ||| ||| || |||||||||| ||| |||||||||||||||||||       |||  ||||| ||||||||     
T  31893173 acaccgacatcccaactaggttggcatcccgagaagcctccatcctatgcccgtcaaactctaaaattttattaaaaaaaggggaaaaaaaatatacaaa 31893074  T
Q  167 aagaggggggactatgccaaaaccctca 194  Q
     ||||||||||||| |||||||||||||    
T  31893073 gagaggggggactaggccaaaaccctca 31893046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 44 - 141
Target Start/End: Original strand, 16816227 - 16816322
Alignment:
Q  44 ggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt 141  Q
    |||||| |||||||||| ||||||||||||| ||||||||||||||||||| |  |||| |||| ||||||||||| | |||||||  ||||||||||    
T  16816227 ggagagtggacatgcatcaagaggaaacaccaacatcccaactaggttggcgcctcggggaacctccatcctatgcagtcaaactc--aaattttatt 16816322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 215
Target Start/End: Original strand, 34879933 - 34880081
Alignment:
Q  68 aaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnnnnnnngggaaaaatatatacaaga 167  Q
    |||||||||||||| |||||||||||||| |||  ||||| || |||||||  |   |||||||||||||||||        ||||||||||||| ||||    
T  34879933 aaacaccgacatcctaactaggttggcaccccgaaaaacctccgtcctatgttgtacaactctaaaattttattaaaaaaatggaaaaatatata-aaga 34880031  T
Q  168 agaggggggactatgccaaaaccctc--agaagaaaataaacagaaaaaa 215  Q
    | ||||||||||| ||||||||||||  |||| |||| ||||||||||||    
T  34880032 aaaggggggactaggccaaaaccctcaaagaaaaaaacaaacagaaaaaa 34880081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 26505975 - 26505887
Alignment:
Q  36 ctaggcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgcca 124  Q
    ||||||||||||||||||||||||| |||||||||||| ||||  ||| |||||||||||| |||  ||| | ||||| ||||||||||    
T  26505975 ctaggcaaggagagaggacatgcatcaagaggaaacactgacaaaccagctaggttggcaccccgaaaaatctccatcgtatgccgcca 26505887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 174
Target Start/End: Complemental strand, 42264501 - 42264373
Alignment:
Q  46 agagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnnnn 145  Q
    |||||||||||  || || |||||||| |||||  ||||||||||||| |  ||| |||||| ||||| ||| |||||||||||||||||||||||        
T  42264501 agagaggacatatatcaaaaggaaacatcgacaaaccaactaggttggtatcccgagaaacctccatcatataccgccaaactctaaaattttattaaaa 42264402  T
Q  146 nnngggaaaaatatatacaagaagagggg 174  Q
       | ||||||||||||||| ||||||||    
T  42264401 aatgagaaaaatatatacaaaaagagggg 42264373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 21487828 - 21487914
Alignment:
Q  43 aggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc 129  Q
    ||||||| ||||| |||| ||||||||    ||||||||||||||||||||||| |||   ||||||||||||||||||||||||||    
T  21487828 aggagagtggacaggcatcaagaggaagtgacgacatcccaactaggttggcaccccgaagaacccccatcctatgccgccaaactc 21487914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 34517768 - 34517674
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaa 134  Q
    ||||||||| | |||| |||| |||| |||||| |||||||||||  |||||||||  ||| |||||| ||||||||||| ||||||||||||||    
T  34517768 gcaaggagaaatgacaagcatcaagaagaaacatcgacatcccaataaggttggcatcccgagaaacctccatcctatgctgccaaactctaaaa 34517674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 907648 - 907749
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttta 139  Q
    ||||||||||| ||||  ||| |||||  | || ||||||||||||||| ||||||| | | || ||| |||||||||||||||||||||||||| ||||    
T  907648 gcaaggagagatgacagacatcaagagacatcatcgacatcccaactagattggcaccctgagagacctccatcctatgccgccaaactctaaaaattta 907747  T
Q  140 tt 141  Q
    ||    
T  907748 tt 907749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 128
Target Start/End: Original strand, 13309371 - 13309456
Alignment:
Q  43 aggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaact 128  Q
    ||||||| ||||| |||| |||||| | || ||||||||||||||||||||||| ||| || ||| |||||||| |||||||||||    
T  13309371 aggagagtggacaggcatcaagaggcatcatcgacatcccaactaggttggcaccccgagagacctccatcctaagccgccaaact 13309456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 3833445 - 3833517
Alignment:
Q  70 acaccgacatcccaactaggttggcacaccgggaaacccccatcctatg-ccgccaaactctaaaattttatt 141  Q
    ||||||||||||||||||||||||||| ||||||| || || ||||||| ||| | |||||||||||||||||    
T  3833445 acaccgacatcccaactaggttggcaccccgggaagcctccgtcctatgcccgtctaactctaaaattttatt 3833517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 193
Target Start/End: Complemental strand, 23487540 - 23487385
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttta 139  Q
    |||||||||||||||| |||| | |||| | || |||||| |||||||| |||| || ||| || ||| ||||||||||||||||| ||| |||| ||||    
T  23487540 gcaaggagagaggacaggcatcaggaggcatcatcgacattccaactagattggtaccccgagatacctccatcctatgccgccaagctcgaaaaattta 23487441  T
Q  140 ttnnnnnnnggg--aaaaatatatacaagaagaggggggactatgccaaaaccctc 193  Q
    ||       |||  ||| |||||||||| | ||||||||| ||| |||||||||||    
T  23487440 ttaaaaaagggggaaaagatatatacaaaaggaggggggattataccaaaaccctc 23487385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 194
Target Start/End: Original strand, 15120877 - 15121006
Alignment:
Q  64 gaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnnnnnnngg-gaaaaatatata 162  Q
    |||||||||| ||||| |||| |||||| |||| |||||||||| ||||||||||| ||||| ||| |||||||||||       ||  ||||||| |||    
T  15120877 gaggaaacactgacatgccaattaggttagcaccccgggaaacctccatcctatgctgccaagctc-aaaattttatttaaaaaaggaaaaaaataaata 15120975  T
Q  163 caagaagaggggggactatgccaaaaccctca 194  Q
    ||||| || ||||||||| |||||||||||||    
T  15120976 caagagga-gggggactaggccaaaaccctca 15121006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 194
Target Start/End: Original strand, 15145065 - 15145194
Alignment:
Q  64 gaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnnnnnnngg-gaaaaatatata 162  Q
    |||||||||| ||||| |||| |||||| |||| |||||||||| ||||||||||| ||||| ||| |||||||||||       ||  ||||||| |||    
T  15145065 gaggaaacactgacatgccaattaggttagcaccccgggaaacctccatcctatgctgccaagctc-aaaattttatttaaaaaaggaaaaaaataaata 15145163  T
Q  163 caagaagaggggggactatgccaaaaccctca 194  Q
    ||||| || ||||||||| |||||||||||||    
T  15145164 caagagga-gggggactaggccaaaaccctca 15145194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 127
Target Start/End: Complemental strand, 10433283 - 10433199
Alignment:
Q  43 aggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaac 127  Q
    |||||| |||||| |||| |||||||| ||||||||||||||||||||| ||||  |||  |||| ||||| ||||| |||||||    
T  10433283 aggagaaaggacaagcatcaagaggaagcaccgacatcccaactaggtttgcacctcggagaacctccatcatatgctgccaaac 10433199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 17122884 - 17122829
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc 129  Q
    ||||||||||||||||||||||| |||   ||||| ||||||||||||||||||||    
T  17122884 cgacatcccaactaggttggcaccccgcagaaccctcatcctatgccgccaaactc 17122829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 33064820 - 33064894
Alignment:
Q  51 ggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaa 125  Q
    ||||| |||| ||| |||| || ||||||||||||||||||||||| |||   |||||||||||||| |||||||    
T  33064820 ggacaggcatcaaggggaagcaacgacatcccaactaggttggcaccccgcagaacccccatcctataccgccaa 33064894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 46391557 - 46391653
Alignment:
Q  96 caccgggaaacccccatcctatgccgccaaactctaaaattttattnnnnnnnggg--aaaaatatatacaagaagaggggggactatgccaaaaccctc 193  Q
    |||||||||||| ||||||||||| ||||||||| |||||||||||       |||  ||||||||||||   |||||||||||||| ||||||||||||    
T  46391557 caccgggaaacctccatcctatgctgccaaactc-aaaattttattaaaaaaaggggaaaaaatatatac---aagaggggggactaggccaaaaccctc 46391652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 14986172 - 14986127
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaac 85  Q
    |||| |||||||||||||||| ||||||||||||||||||| ||||    
T  14986172 gcaatgagagaggacatgcatcaagaggaaacaccgacatcacaac 14986127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 15114153 - 15114218
Alignment:
Q  64 gaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc 129  Q
    |||||||||| ||||| |||| |||||| |||| || ||||||| ||||||||||| |||||||||    
T  15114153 gaggaaacactgacatgccaattaggttagcaccccaggaaacctccatcctatgcagccaaactc 15114218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 15127169 - 15127234
Alignment:
Q  64 gaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc 129  Q
    |||||||||| ||||| |||| |||||| |||| || ||||||| ||||||||||| |||||||||    
T  15127169 gaggaaacactgacatgccaattaggttagcaccccaggaaacctccatcctatgcagccaaactc 15127234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 41917131 - 41917086
Alignment:
Q  76 acatcccaactaggttggcacaccgggaaacccccatcctatgccg 121  Q
    ||||||||||||||||||||| ||||  ||||||||||||||||||    
T  41917131 acatcccaactaggttggcaccccggagaacccccatcctatgccg 41917086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 141
Target Start/End: Original strand, 11779316 - 11779416
Alignment:
Q  42 aaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaa-attttat 140  Q
    ||||||||||||||  ||| |||||| |||| ||  ||||||| ||||||||||| ||| | || | ||||||| ||||| ||||||||||| |||||||    
T  11779316 aaggagagaggacagacatcaagaggcaacatcggtatcccaattaggttggcaccccgagtaaactccatcctctgccgtcaaactctaaagattttat 11779415  T
Q  141 t 141  Q
    |    
T  11779416 t 11779416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 15318104 - 15318171
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactcta-aaattttatt 141  Q
    ||||||||||||||| ||||||| |||   |||||||||||||||||||||||||| | ||||||||||    
T  15318104 cgacatcccaactagattggcac-ccgcagaacccccatcctatgccgccaaactcaagaaattttatt 15318171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 21813218 - 21813158
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaa 134  Q
    ||||||||||||||||||||||| ||| || ||| |||||||||||| ||| |||| ||||    
T  21813218 cgacatcccaactaggttggcaccccgagacacctccatcctatgccaccacactcgaaaa 21813158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 141
Target Start/End: Original strand, 1624028 - 1624127
Alignment:
Q  42 aaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt 141  Q
    |||||||| |||||  ||| |||||| |||| | | |||||||||||||||| || |||  ||| | ||||||||  |||||||||||||||| ||||||    
T  1624028 aaggagagtggacacacatcaagaggcaacatcaatatcccaactaggttggtaccccgataaatctccatcctacaccgccaaactctaaaaatttatt 1624127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 27177654 - 27177599
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc 129  Q
    ||||||||||||||||||||||| ||| || | | ||||||| |||||||||||||    
T  27177654 cgacatcccaactaggttggcactccgagacatcgccatcctttgccgccaaactc 27177599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 2583068 - 2583170
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaa-atttt 138  Q
    ||||||||||||||||  ||| |||||| | || |||||||||||||| ||||||||  |  || ||| || || ||||||||||||||| ||| |||||    
T  2583068 gcaaggagagaggacagacatcaagaggcatcatcgacatcccaactaagttggcacctcaagagacctccgtcgtatgccgccaaactcaaaagatttt 2583167  T
Q  139 att 141  Q
    |||    
T  2583168 att 2583170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 9133067 - 9133119
Alignment:
Q  149 gggaaaaatatatacaagaagaggggggactatgccaaaaccctcagaagaaaa 202  Q
    ||||||||||| ||||  || ||||||||||||||||||||||||| |||||||    
T  9133067 gggaaaaatatttacattaa-aggggggactatgccaaaaccctcaaaagaaaa 9133119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 13533500 - 13533423
Alignment:
Q  64 gaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt 141  Q
    ||||||||||||| |||  |||||| || |||| |||  ||||| || ||||||||  ||||||||||||||||||||    
T  13533500 gaggaaacaccgatatctaaactagattagcaccccgaaaaacctccgtcctatgctcccaaactctaaaattttatt 13533423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 19068611 - 19068688
Alignment:
Q  64 gaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt 141  Q
    |||||||||||| ||||  |||||| || ||||  || |||||| || ||||||||  ||||||||||||||||||||    
T  19068611 gaggaaacaccgccatctgaactagattagcacctcgagaaacctccgtcctatgctcccaaactctaaaattttatt 19068688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 19116501 - 19116578
Alignment:
Q  64 gaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt 141  Q
    |||||||||||| ||||  |||||| || ||||  || |||||| || ||||||||  ||||||||||||||||||||    
T  19116501 gaggaaacaccgccatctgaactagattagcacctcgagaaacctccgtcctatgctcccaaactctaaaattttatt 19116578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0437 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 44 - 198
Target Start/End: Complemental strand, 11499 - 11345
Alignment:
Q  44 ggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnn 143  Q
    ||||||||||||  ||| |||||| |||||||||||||||||||||||||||| ||||||| || ||||||||||||||||| |||||||| ||||||      
T  11499 ggagagaggacaaacatcaagagggaacaccgacatcccaactaggttggcaccccgggaaccctccatcctatgccgccaatctctaaaactttattaa 11400  T
Q  144 nnnnngggaaaaatatatacaagaagaggggggactatgccaaaaccctcagaag 198  Q
         ||||||||  | |||||||||||||||||||| |||||||||||| ||||    
T  11399 aaaaagggaaaaaactgtacaagaagaggggggactaggccaaaaccctctgaag 11345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0437; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 14319 - 14421
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaa-atttt 138  Q
    ||||||||||||||||  ||| |||||| | || ||||||||||||||||||||||  ||| || ||| ||||||||||||||||||||| ||| |||||    
T  14319 gcaaggagagaggacagacatcaagaggcatcatcgacatcccaactaggttggcatcccgagagacctccatcctatgccgccaaactcaaaagatttt 14418  T
Q  139 att 141  Q
    |||    
T  14419 att 14421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 43 - 202
Target Start/End: Complemental strand, 25760106 - 25759947
Alignment:
Q  43 aggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattn 142  Q
    ||||||||||||| |||| |||||| ||||||||||||||||||||||||||||  ||| ||||| ||||||||||| ||||||||||||||| |||||     
T  25760106 aggagagaggacaagcatcaagaggcaacaccgacatcccaactaggttggcacttcggaaaacctccatcctatgctgccaaactctaaaatattatta 25760007  T
Q  143 nnnnnngggaaaaatatatacaagaaga-ggggggactatgccaaaaccctcagaagaaaa 202  Q
          ||| ||||  | |||||||||| ||||||||||||||||||||||||||||||||    
T  25760006 aaaaagggggaaaa-ctgtacaagaagagggggggactatgccaaaaccctcagaagaaaa 25759947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 37 - 208
Target Start/End: Original strand, 26953937 - 26954104
Alignment:
Q  37 taggcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatt 136  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||   | | ||||| ||||| ||||||||||||||||||||||    
T  26953937 taggcaaggagagacgacatgcatcaagaggaaacaccgacatcccaactaggttggcatctcagaaaacctccatcatatgccgccaaactctaaaatt 26954036  T
Q  137 ttattnnnnnnngggaaaaatatatacaagaagaggggggactatgccaaaaccctcagaagaaaataaaca 208  Q
    |||||        ||||||| ||||||   ||||| ||||| ||  ||||||||||||||||||||||||||    
T  26954037 ttattaaaaaaa-ggaaaaacatatac---aagagaggggattagaccaaaaccctcagaagaaaataaaca 26954104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 40 - 193
Target Start/End: Original strand, 1051306 - 1051458
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttta 139  Q
    ||||||||||||||||  ||| |||||| ||||||||||||||||||||||||||||  ||||||||| |||||||| ||||||||||||||||  ||||    
T  1051306 gcaaggagagaggacaaacatcaagagggaacaccgacatcccaactaggttggcacctcgggaaacctccatcctaagccgccaaactctaaagattta 1051405  T
Q  140 ttnnnnnnngggaaaaatatatacaagaagaggggggactatgccaaaaccctc 193  Q
    ||       ||| ||||| | |||||||||||||||||||| ||||| ||||||    
T  1051406 ttaaaaaaaggg-aaaatctgtacaagaagaggggggactaggccaagaccctc 1051458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 18517767 - 18517666
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttta 139  Q
    |||||||||| |||||||||| |||||| |||| ||||||||||||||||||||||  ||| || | | ||||||||||||| |||||||||||||||||    
T  18517767 gcaaggagagtggacatgcatcaagaggcaacatcgacatcccaactaggttggcatcccgagatagctccatcctatgccgtcaaactctaaaatttta 18517668  T
Q  140 tt 141  Q
    ||    
T  18517667 tt 18517666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 41 - 202
Target Start/End: Complemental strand, 26430345 - 26430185
Alignment:
Q  41 caaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttat 140  Q
    |||||||||||||||| ||| |||||| | || |||||||| |||||||||||||| |||  | ||| ||||||||||||||||||||||||||  ||||    
T  26430345 caaggagagaggacatacatcaagaggcatcatcgacatcctaactaggttggcaccccgtaatacctccatcctatgccgccaaactctaaaaaattat 26430246  T
Q  141 tnnnnnnngggaaaaatatatacaagaagaggggggactatgccaaaaccctcagaagaaaa 202  Q
    |        |||||||||  ||||| | || ||||||||| |||||||||||||||||||||    
T  26430245 tgaaaaagtggaaaaataattacaa-aggaagggggactaggccaaaaccctcagaagaaaa 26430185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 202
Target Start/End: Complemental strand, 40790718 - 40790594
Alignment:
Q  76 acatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnnnnnnngggaaaaatatatacaagaagaggggg 175  Q
    |||| |||||||||||||||  |||||||||| | ||||||||||| |||| ||||||||||||||       || ||||||| ||||||||||||||||    
T  40790718 acataccaactaggttggcat-ccgggaaacctcaatcctatgccgtcaaattctaaaattttattaaaaaaagg-aaaaatacatacaagaagaggggg 40790621  T
Q  176 gactatgccaaaaccctcagaagaaaa 202  Q
    ||||| ||||||| |||||||||||||    
T  40790620 gactaggccaaaatcctcagaagaaaa 40790594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 215
Target Start/End: Complemental strand, 10997489 - 10997341
Alignment:
Q  67 gaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnnnnnnnggg-aaaaatatatacaa 165  Q
    |||||||||||||||||| ||||||||||| ||| |||||| || || |||| || ||||||||||||||||||        ||| ||||| ||||| ||    
T  10997489 gaaacaccgacatcccaattaggttggcaccccgagaaacctccgtcttatgtcgtcaaactctaaaattttatcaaaaaaagggaaaaaaaatataaaa 10997390  T
Q  166 gaagaggggggactatgccaaaaccctcagaagaaaataaacagaaaaaa 215  Q
    ||||| ||||||||| ||||||||||||  ||||||| ||||| ||||||    
T  10997389 gaaga-gggggactaggccaaaaccctcgaaagaaaacaaacaaaaaaaa 10997341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 19826401 - 19826492
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactcta 131  Q
    |||||||| || |||| |||| |||||| |||| ||||||||||||||||||||||| ||  |||||| || ||||||||||||||||||||    
T  19826401 gcaaggagggaagacaagcattaagaggcaacatcgacatcccaactaggttggcaccccaagaaacctccgtcctatgccgccaaactcta 19826492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 62 - 141
Target Start/End: Complemental strand, 51661747 - 51661668
Alignment:
Q  62 aagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt 141  Q
    |||||| |||| ||||||||||||||||||||||| ||| |||  | ||||||||||||| |||||||||||||||||||    
T  51661747 aagaggcaacatcgacatcccaactaggttggcaccccgagaactctccatcctatgccgtcaaactctaaaattttatt 51661668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 138
Target Start/End: Complemental strand, 16038046 - 16037948
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttt 138  Q
    ||||||||||| ||||  ||| |||||| | || ||||||| |||||||||||| || ||| || ||| ||||||||||||||||||||||||||||||    
T  16038046 gcaaggagagatgacagacatcaagaggcatcatcgacatctcaactaggttggaaccccgagagacctccatcctatgccgccaaactctaaaatttt 16037948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 10623238 - 10623301
Alignment:
Q  54 catgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctat 117  Q
    ||||||| |||||||||||||||||||| |||||||||||||| ||||| |||| |||||||||    
T  10623238 catgcatcaagaggaaacaccgacatcctaactaggttggcaccccggggaacctccatcctat 10623301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 134
Target Start/End: Complemental strand, 16041587 - 16041497
Alignment:
Q  44 ggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaa 134  Q
    ||||||| ||||  ||| |||||| | || ||||||| |||||||||||| || ||| || ||| ||||||||||||||||||||||||||    
T  16041587 ggagagatgacagacatcaagaggcatcatcgacatctcaactaggttggaaccccgagagacctccatcctatgccgccaaactctaaaa 16041497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 16053542 - 16053448
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaa 134  Q
    ||||||||||| ||||  ||| |||||| | || ||||||| ||||||||||| ||  ||| |||||| ||||||||||| ||||||||||||||    
T  16053542 gcaaggagagatgacagacatcaagaggcatcatcgacatctcaactaggttgacatcccgagaaacctccatcctatgctgccaaactctaaaa 16053448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 16309657 - 16309743
Alignment:
Q  43 aggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc 129  Q
    |||||||||||||  ||| |||||| | |  |||||||||||||| |||||||| ||||  |||| |||||||||||||||||||||    
T  16309657 aggagagaggacagacatcaagaggtagcttcgacatcccaactaagttggcaccccggagaacctccatcctatgccgccaaactc 16309743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 18490651 - 18490737
Alignment:
Q  43 aggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc 129  Q
    |||||||||||||  ||| |||||| | |  |||||||||||||| |||||||| ||||  |||| |||||||||||||||||||||    
T  18490651 aggagagaggacagacatcaagaggtagcttcgacatcccaactaagttggcaccccggagaacctccatcctatgccgccaaactc 18490737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 19256207 - 19256127
Alignment:
Q  49 gaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc 129  Q
    ||||||||| || ||||||||||| |||||||| |||||||||||||| |||  ||| | |||| ||||| ||||||||||    
T  19256207 gaggacatgtatcaagaggaaacaacgacatcctaactaggttggcaccccgcaaaatctccattctatgtcgccaaactc 19256127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 19185162 - 19185066
Alignment:
Q  43 aggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt 141  Q
    ||||||||||||| |||| |||  ||| || ||||||||||||||||||||||| |||   ||| |||||||||| || ||||||||  ||||||||||    
T  19185162 aggagagaggacaggcatcaaggagaagcaacgacatcccaactaggttggcaccccgaagaactcccatcctataccaccaaactc--aaattttatt 19185066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 192
Target Start/End: Complemental strand, 2899988 - 2899863
Alignment:
Q  70 acaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgc-caaactctaaaattttattnnnnnnn--gggaaaaatatatacaag 166  Q
    |||| |||||||||||||||||||||| | || || || || |||||||||   | |||||||||||||||||         |||||||| |||||||||    
T  2899988 acactgacatcccaactaggttggcaccctggaaagcctccgtcctatgcccatctaactctaaaattttattaaaaaaaaggggaaaaaaatatacaag 2899889  T
Q  167 aagaggggggactatgccaaaaccct 192  Q
     ||||||||||||| |||||||||||    
T  2899888 gagaggggggactaggccaaaaccct 2899863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 47165909 - 47165969
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaa 134  Q
    ||||||||||||||||||||||| ||| || | | ||||||||||||||||  ||||||||    
T  47165909 cgacatcccaactaggttggcaccccgagagaactccatcctatgccgccacgctctaaaa 47165969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 189
Target Start/End: Complemental strand, 3736570 - 3736419
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaa-atttt 138  Q
    |||||||||| |||||  ||| ||| || | || ||||||||||||||||||||||| ||| || ||| ||||||| ||| |||| |||| ||| | |||    
T  3736570 gcaaggagagtggacaaacatcaagcggcatcatcgacatcccaactaggttggcaccccgagacacctccatcctctgctgccacactcgaaataattt 3736471  T
Q  139 att-nnnnnnngggaaaaatatatacaagaagaggggggactatgccaaaac 189  Q
    |||        ||||||||||  ||||| |||||||||||||| ||||||||    
T  3736470 attaaaaaagggggaaaaataattacaaaaagaggggggactaggccaaaac 3736419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 2928563 - 2928664
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttta 139  Q
    |||||||||| |||||  ||| |||| | |||| |||||| |||||||||||||||   || || ||| ||||| ||||| || |||||||||||| |||    
T  2928563 gcaaggagagtggacagtcatcaagaagcaacatcgacattccaactaggttggcaattcgagagacctccatcttatgctgctaaactctaaaatatta 2928662  T
Q  140 tt 141  Q
    ||    
T  2928663 tt 2928664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 131
Target Start/End: Original strand, 5813554 - 5813639
Alignment:
Q  46 agagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactcta 131  Q
    |||||||| | |||| |||||| |||| |||| | |||||||||||||||  ||| ||||||  |||||||||| | |||||||||    
T  5813554 agagaggataggcatcaagaggcaacatcgacttaccaactaggttggcatcccgagaaaccttcatcctatgctgtcaaactcta 5813639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 20952443 - 20952399
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatg 118  Q
    ||||||||||||||||||||||| |||   |||||||||||||||    
T  20952443 cgacatcccaactaggttggcaccccgcagaacccccatcctatg 20952399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 27943628 - 27943680
Alignment:
Q  66 ggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatg 118  Q
    |||||||||||||||||||||||||| |||| ||  | |||| ||||||||||    
T  27943628 ggaaacaccgacatcccaactaggttagcaccccatggaacctccatcctatg 27943680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 41 - 193
Target Start/End: Complemental strand, 2382 - 2229
Alignment:
Q  41 caaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttat 140  Q
    ||||||||||||||| |||| |||||| |||||||||||||||||||||||||||| ||||||| || ||||||||||||||||| |||||||| |||||    
T  2382 caaggagagaggacaagcatcaagagggaacaccgacatcccaactaggttggcaccccgggaaccctccatcctatgccgccaatctctaaaactttat 2283  T
Q  141 t-nnnnnnngggaaaaatatatacaagaagaggggggactatgccaaaaccctc 193  Q
    |        ||||||||  | |||||||||| ||||||||| ||||||||||||    
T  2282 taaaaaaaggggaaaaaattgtacaagaagaagggggactaggccaaaaccctc 2229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 37 - 141
Target Start/End: Complemental strand, 1633396 - 1633292
Alignment:
Q  37 taggcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatt 136  Q
    |||||||||||||||||||||||| |||||||||||||||||  |||||||||||| ||| ||| |||||| | ||||||||||||||||||||||||||    
T  1633396 taggcaaggagagaggacatgcatcaagaggaaacaccgacaatccaactaggttgacaccccgagaaacctcaatcctatgccgccaaactctaaaatt 1633297  T
Q  137 ttatt 141  Q
    |||||    
T  1633296 ttatt 1633292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 62 - 137
Target Start/End: Original strand, 1537969 - 1538044
Alignment:
Q  62 aagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattt 137  Q
    ||||||||||||||||||||||||||||||| |||   |||||||| |||||||||||||||||||||||||||||    
T  1537969 aagaggaaacaccgacatcccaactaggttgccacctagggaaacctccatcctatgccgccaaactctaaaattt 1538044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 57 - 194
Target Start/End: Complemental strand, 12163467 - 12163333
Alignment:
Q  57 gcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnnnnnnngggaaaaa 156  Q
    |||| |||||| ||||||||||||||||||||||||||||  ||||||||| ||||| | ||||||||| ||| |||| ||||||       ||||||||    
T  12163467 gcatcaagaggcaacaccgacatcccaactaggttggcacctcgggaaacctccatcgtctgccgccaacctc-aaaactttattaaacaaagggaaaaa 12163369  T
Q  157 tatatacaagaagaggggggactatgccaaaaccctca 194  Q
    ||||||||   ||||||||||||| |||||||||||||    
T  12163368 tatataca--gagaggggggactaggccaaaaccctca 12163333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 981005 - 980919
Alignment:
Q  43 aggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc 129  Q
    |||||||||||||  ||| |||||| | | |||||||||||||||||||||||| ||||  |||| |||||||||||||||||||||    
T  981005 aggagagaggacaaacatcaagaggcagctccgacatcccaactaggttggcactccggagaacctccatcctatgccgccaaactc 980919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 131
Target Start/End: Complemental strand, 28780265 - 28780179
Alignment:
Q  45 gagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactcta 131  Q
    |||||||||||||||| |||||| |||| ||||||||||||||||||||||  ||  |||| |  ||||||||||||||||||||||    
T  28780265 gagagaggacatgcatcaagaggcaacatcgacatcccaactaggttggcatcccaagaaatcttcatcctatgccgccaaactcta 28780179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 11295355 - 11295461
Alignment:
Q  40 gcaaggagagaggacatgcatgaa----gaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactcta-aaa 134  Q
    ||||||||||||||| ||||| ||    |||| |||| |||||||| |||||||||||||| ||| |||||| | ||||||||||||||||||||| |||    
T  11295355 gcaaggagagaggacgtgcattaattaagaggcaacatcgacatccaaactaggttggcactccgagaaacctctatcctatgccgccaaactctataaa 11295454  T
Q  135 ttttatt 141  Q
    |||||||    
T  11295455 ttttatt 11295461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 4463449 - 4463521
Alignment:
Q  70 acaccgacatcccaactaggttggcacaccgggaaacccccatcctatg-ccgccaaactctaaaattttatt 141  Q
    |||| |||||||||||||||||||||| || |||| || |||||||||| |||||||||||||||||||||||    
T  4463449 acactgacatcccaactaggttggcaccccaggaagcctccatcctatgcccgccaaactctaaaattttatt 4463521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 14073877 - 14073790
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaact 128  Q
    |||||||||||||||| |||| |||||| |||| |||| | |||||||||||||||| | | |||||| ||||||||||||||||||||    
T  14073877 gcaaggagagaggaca-gcatcaagaggcaacatcgacttaccaactaggttggcaccctgagaaacctccatcctatgccgccaaact 14073790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 14383905 - 14383818
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaact 128  Q
    |||||||||||||||| |||| |||||| |||| |||| | |||||||||||||||| | | |||||| ||||||||||||||||||||    
T  14383905 gcaaggagagaggaca-gcatcaagaggcaacatcgacttaccaactaggttggcaccctgagaaacctccatcctatgccgccaaact 14383818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 22849520 - 22849614
Alignment:
Q  47 gagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt 141  Q
    |||||||||||||| | |||  | || ||||||||||||||||||||||| ||| || ||| | ||||||||||||||||||| |||| ||||||    
T  22849520 gagaggacatgcataaggagtcatcatcgacatcccaactaggttggcaccccgagatacctctatcctatgccgccaaactcaaaaaatttatt 22849614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 194
Target Start/End: Original strand, 15468274 - 15468398
Alignment:
Q  70 acaccgacatcccaactaggttggcacaccgggaaacccccatcctatgc-cgccaaactctaaaattttattnnnnnnngggaaaaatatatacaagaa 168  Q
    |||||||||||||||||||||||||||  |||||  || |  |||||||| || | |||||||||||||||||       ||| |||| ||||||||| |    
T  15468274 acaccgacatcccaactaggttggcacctcgggaggcctctgtcctatgctcgtctaactctaaaattttattaaaaaagggggaaaa-atatacaagga 15468372  T
Q  169 gaggggggactatgccaaaaccctca 194  Q
    |||||||||||| |||||||||||||    
T  15468373 gaggggggactaggccaaaaccctca 15468398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 28937407 - 28937335
Alignment:
Q  70 acaccgacatcccaactaggttggcacaccgggaaacccccatcctatg-ccgccaaactctaaaattttatt 141  Q
    ||||||||||||||||||||||||||  |||| || || |||||||||| ||| |||||||||||||||||||    
T  28937407 acaccgacatcccaactaggttggcatcccggaaagcctccatcctatgcccgtcaaactctaaaattttatt 28937335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 1862350 - 1862405
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc 129  Q
    ||||||||||||||||||||||| ||||  |||| |||||||||||||||||||||    
T  1862350 cgacatcccaactaggttggcaccccggagaacctccatcctatgccgccaaactc 1862405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 10996459 - 10996364
Alignment:
Q  44 ggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt 141  Q
    |||||||||| |  ||| ||||||||||||||| ||| |||||| |||||||| || |||||   |||||||||||||||||||||  ||||||||||    
T  10996459 ggagagaggaaaaacatcaagaggaaacaccgatatctcaactaagttggcaccccaggaaaattccatcctatgccgccaaactc--aaattttatt 10996364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 4407428 - 4407500
Alignment:
Q  70 acaccgacatcccaactaggttggcacaccgggaaacccccatcctatg-ccgccaaactctaaaattttatt 141  Q
    ||||||||||||||||||||||||||| || | || || || ||||||| ||| |||||||||||||||||||    
T  4407428 acaccgacatcccaactaggttggcaccccagaaagcctccgtcctatgcccgtcaaactctaaaattttatt 4407500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 12727856 - 12727796
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaa 134  Q
    ||||||||||||||||||||||  ||| || ||||||||||||||||||||  ||||||||    
T  12727856 cgacatcccaactaggttggcatcccgagagacccccatcctatgccgccacgctctaaaa 12727796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 3399540 - 3399631
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactcta 131  Q
    |||||||||||||| |  ||| || ||| |||| |||| | |||||||||||||||| ||| ||||||  |||||||||||| |||||||||    
T  3399540 gcaaggagagaggatagacatcaaaaggcaacatcgacttaccaactaggttggcaccccgagaaaccttcatcctatgccgtcaaactcta 3399631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 180
Target Start/End: Complemental strand, 11842815 - 11842706
Alignment:
Q  69 aacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgcc-gccaaactctaaaattttattnnnnnnngggaaaaatatatacaaga 167  Q
    ||||||||||||||||||||||||| || ||||||| || ||| |||||||| ||||| |||||||  ||||||       ||||||||||||||||||     
T  11842815 aacaccgacatcccaactaggttggtaccccgggaagcctccaccctatgcctgccaatctctaaa--tttatt-aataaagggaaaaatatatacaagt 11842719  T
Q  168 agaggggggacta 180  Q
    ||| |||||||||    
T  11842718 agaagggggacta 11842706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 121
Target Start/End: Complemental strand, 37375064 - 37375017
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccg 121  Q
    ||||||||||||||||||||||| ||| | ||||||||||||||||||    
T  37375064 cgacatcccaactaggttggcaccccgaggaacccccatcctatgccg 37375017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 38993120 - 38993171
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaa 125  Q
    ||||||||||||||||||||||| |||   ||||||||||||||||||||||    
T  38993120 cgacatcccaactaggttggcaccccgcagaacccccatcctatgccgccaa 38993171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 2040072 - 2040122
Alignment:
Q  45 gagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggca 95  Q
    |||| ||||||| |||||||||| | |||||||||||||||||||||||||    
T  2040072 gagaaaggacatacatgaagaggtagcaccgacatcccaactaggttggca 2040122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 20382386 - 20382337
Alignment:
Q  76 acatcccaactaggttggcacaccgggaaacccccatcctatgccgccaa 125  Q
    ||||||||||||||||||||| |||   ||||||||||||||||||||||    
T  20382386 acatcccaactaggttggcaccccgcagaacccccatcctatgccgccaa 20382337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 24573681 - 24573753
Alignment:
Q  62 aagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaa 134  Q
    |||||| |||| |||||||||||||||||||| |  ||| |||| |  ||| |||||||||||||||||||||    
T  24573681 aagaggcaacatcgacatcccaactaggttggtagcccgagaaatcttcattctatgccgccaaactctaaaa 24573753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 141
Target Start/End: Original strand, 9411264 - 9411303
Alignment:
Q  102 gaaacccccatcctatgccgccaaactctaaaattttatt 141  Q
    |||||| ||||||||||||||||||||||||||| |||||    
T  9411264 gaaacctccatcctatgccgccaaactctaaaatattatt 9411303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 126
Target Start/End: Original strand, 5461496 - 5461586
Alignment:
Q  36 ctaggcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaa 126  Q
    |||||| |||||||| ||||  ||| ||||||||| | |||||||||||||| ||| |||| | | ||||||  |||||||||||| ||||    
T  5461496 ctaggctaggagagaagacaaacatcaagaggaaatatcgacatcccaactaagttagcactctgtgaaaccttcatcctatgccggcaaa 5461586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 7324301 - 7324257
Alignment:
Q  149 gggaaaaatatatacaagaagaggggggactatgccaaaaccctca 194  Q
    |||||||||||||| || |||||||||||||| |||||||||||||    
T  7324301 gggaaaaatatatataa-aagaggggggactaggccaaaaccctca 7324257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 23050711 - 23050630
Alignment:
Q  47 gagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaact 128  Q
    ||||||||||| || ||||||||||| |  |||||||||||||||| ||  | | || ||| ||||||||| ||||||||||    
T  23050711 gagaggacatgtatcaagaggaaacaacagcatcccaactaggttgacatccagtgatacctccatcctataccgccaaact 23050630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 194
Target Start/End: Complemental strand, 32022026 - 32021900
Alignment:
Q  70 acaccgacatcccaactaggttggcacaccgggaaacccccatcctatg-ccgccaaactctaaaattttatt-nnnnnnngggaaaaatatatacaaga 167  Q
    |||||||||||||||||||||| |||   || ||| |  |||||||||| ||| |||||||||||||||||||        ||| |||| ||||||||      
T  32022026 acaccgacatcccaactaggttagcatctcgagaagcatccatcctatgcccgtcaaactctaaaattttattaaaaaaagggggaaaaaatatacaaag 32021927  T
Q  168 agaggggggactatgccaaaaccctca 194  Q
    |||||||||||||  ||||||||||||    
T  32021926 agaggggggactagaccaaaaccctca 32021900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 17157579 - 17157647
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaa-attttatt 141  Q
    ||||||||||| |||||||  |  ||| ||| || ||||||||||||||||||||||||| ||||||||    
T  17157579 cgacatcccaattaggttgatatcccgagaagcctccatcctatgccgccaaactctaaagattttatt 17157647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 18270319 - 18270379
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaa 134  Q
    |||||||||||||| |||||||| ||| || ||| ||||||||||| | || |||||||||    
T  18270319 cgacatcccaactaagttggcaccccgagagacctccatcctatgctgtcagactctaaaa 18270379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 41 - 193
Target Start/End: Original strand, 21711528 - 21711681
Alignment:
Q  41 caaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttat 140  Q
    ||||||||||||||| |||| |||||| |||||||||||||||||||||||||||| ||||||| || ||||||||||||||||| |||||||| |||||    
T  21711528 caaggagagaggacaagcatcaagagggaacaccgacatcccaactaggttggcaccccgggaaccctccatcctatgccgccaatctctaaaactttat 21711627  T
Q  141 t-nnnnnnngggaaaaatatatacaagaagaggggggactatgccaaaaccctc 193  Q
    |        ||||||||  | |||||||||| ||||||||| ||||||||||||    
T  21711628 taaaaaaaggggaaaaaattgtacaagaagaagggggactaggccaaaaccctc 21711681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 198
Target Start/End: Complemental strand, 15614822 - 15614666
Alignment:
Q  44 ggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt-- 141  Q
    |||||||||||| |||| |||||| |||||||||||||||||||||||||||| ||||||| || |||||||||||||| || | |||||| ||||||      
T  15614822 ggagagaggacaagcatcaagagggaacaccgacatcccaactaggttggcaccccgggaaccctccatcctatgccgcaaatcgctaaaactttattaa 15614723  T
Q  142 nnnnnnngggaaaaatatatacaagaagaggggggactatgccaaaaccctcagaag 198  Q
           ||||||||  | |||||||||||||||||||| |||||||||||| ||||    
T  15614722 aaaaaaggggaaaaaactgtacaagaagaggggggactaggccaaaaccctctgaag 15614666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 141
Target Start/End: Original strand, 2259390 - 2259485
Alignment:
Q  44 ggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt 141  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||| |||||||||  ||||||||||    
T  2259390 ggagagtggacatgcatcaagaggaaacaccgacatcccaactaggttggcatcccgggaaacctccatcctatgcagccaaactc--aaattttatt 2259485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 19068683 - 19068784
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttta 139  Q
    |||| |||||||||||  ||| |||||| |||| |||||||| |||||||||||||| | | |||||| ||||||||||||||||||||||| || ||||    
T  19068683 gcaatgagagaggacagacattaagaggcaacatcgacatccaaactaggttggcaccctgagaaacctccatcctatgccgccaaactctagaaattta 19068782  T
Q  140 tt 141  Q
    ||    
T  19068783 tt 19068784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 35341977 - 35341877
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttta 139  Q
    |||||||||||||||| |||| |||||  | || ||||||||||||||| ||||||| ||| || ||| ||||||||||||||||||||| |||| ||||    
T  35341977 gcaaggagagaggacaggcatcaagagtcatcatcgacatcccaactag-ttggcaccccgagatacctccatcctatgccgccaaactcgaaaaattta 35341879  T
Q  140 tt 141  Q
    ||    
T  35341878 tt 35341877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 74 - 194
Target Start/End: Original strand, 28682780 - 28682901
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactct-aaaattttattnnnnnnngggaaaaatatatacaagaagagg 172  Q
    ||||||||||||||||||||||  ||| || ||| ||||||||||||||||  |||| |||||||||||       |||||||||| |||||| | ||||    
T  28682780 cgacatcccaactaggttggcatcccgagagacctccatcctatgccgccacgctctaaaaattttattaaaaaaggggaaaaataaatacaaaaggagg 28682879  T
Q  173 ggggactatgccaaaaccctca 194  Q
    ||||||||  ||||||||||||    
T  28682880 ggggactagaccaaaaccctca 28682901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 5781069 - 5781160
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactcta 131  Q
    |||||||| |||||||  ||| |||||| |||| ||||||||||||||||||||||  ||| |||||  |||||||||||| ||||||||||    
T  5781069 gcaaggagggaggacagacattaagaggcaacatcgacatcccaactaggttggcatcccgagaaacttccatcctatgccaccaaactcta 5781160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 141
Target Start/End: Original strand, 24765501 - 24765589
Alignment:
Q  51 ggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt 141  Q
    |||||||||| ||||||||| ||||||||||||||||| ||||||  |||||||||| || || ||||| |||||||||  ||||||||||    
T  24765501 ggacatgcatcaagaggaaataccgacatcccaactagattggcatcccgggaaacctccctcatatgcagccaaactc--aaattttatt 24765589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 4120604 - 4120507
Alignment:
Q  44 ggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt 141  Q
    |||||||||| |  ||| |||||| |||||||||||||||||||||||||||| | ||||| ||  ||| ||||||| |||| |||||||||| ||||    
T  4120604 ggagagaggataaacatcaagagggaacaccgacatcccaactaggttggcaccctgggaacccttcattctatgccaccaatctctaaaattgtatt 4120507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 21027039 - 21027109
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc---taaaattttatt 141  Q
    ||||||||||||||||||||||| |||   ||||||||||||||||||||||||||   ||||||||||||    
T  21027039 cgacatcccaactaggttggcaccccgcagaacccccatcctatgccgccaaactcagataaaattttatt 21027109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 6129684 - 6129786
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaa-atttt 138  Q
    |||||||||||| |||||| |  | ||| |||| |||||||||||| |||||||||| ||| ||| || ||||| |||| |||||||||||||| |||||    
T  6129684 gcaaggagagagaacatgcgtccaaaggcaacatcgacatcccaaccaggttggcaccccgagaagcctccatcatatggcgccaaactctaaagatttt 6129783  T
Q  139 att 141  Q
    |||    
T  6129784 att 6129786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 194
Target Start/End: Complemental strand, 10720948 - 10720815
Alignment:
Q  62 aagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnnnnnnngggaaaaatatat 161  Q
    ||||||||| | |||||||| |||||||||||  |  || |||||| || |||||||| || ||||||||||||||||||       |||||||||||||    
T  10720948 aagaggaaatatcgacatcctaactaggttggtgcttcgagaaacctccgtcctatgctgctaaactctaaaattttatt-aaaaaagggaaaaatatat 10720850  T
Q  162 acaagaag--aggggggactatgccaaaaccctca 194  Q
    ||||||||  ||||||||||| || |||| |||||    
T  10720849 acaagaagaaaggggggactaggcgaaaaacctca 10720815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 34995438 - 34995539
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttta 139  Q
    |||||||| ||||||| |||| | |||  | || ||||||||||||||||||||||| ||| || | | |||||||||||| |||||||| |||| ||||    
T  34995438 gcaaggagggaggacaggcatcaggagtcatcatcgacatcccaactaggttggcaccccgagataactccatcctatgccaccaaactcgaaaaattta 34995537  T
Q  140 tt 141  Q
    ||    
T  34995538 tt 34995539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 11725703 - 11725648
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc 129  Q
    ||||||||||| ||||||||||| ||| || ||| |||||||||||||||||||||    
T  11725703 cgacatcccaattaggttggcactccgagagacctccatcctatgccgccaaactc 11725648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 121
Target Start/End: Complemental strand, 28637673 - 28637626
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccg 121  Q
    ||||||||||||||||||||||| ||| | ||||||||||||||||||    
T  28637673 cgacatcccaactaggttggcaccccgaggaacccccatcctatgccg 28637626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 39324369 - 39324424
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc 129  Q
    ||||||||||||||||||||||| ||| || ||| ||||||||| |||||||||||    
T  39324369 cgacatcccaactaggttggcactccgagagacctccatcctataccgccaaactc 39324424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 202
Target Start/End: Original strand, 32038410 - 32038569
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttta 139  Q
    ||||||||||||| ||  ||| ||||| ||| ||||||||  |||||| ||||| ||   |||||||| |||||||||||||||||||||||| | ||||    
T  32038410 gcaaggagagagg-caaacatcaagagaaaataccgacatttcaactaagttggtaccttgggaaacctccatcctatgccgccaaactctaataattta 32038508  T
Q  140 ttnnnnnnngggaaaaatatatacaagaagaggggggactatgccaaaaccctcagaagaaaa 202  Q
    ||       ||  ||||| | ||||||||||| | |||||| ||||||| |||| ||||||||    
T  32038509 ttaaaaaaggg--aaaatttgtacaagaagagagaggactacgccaaaatcctccgaagaaaa 32038569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 201
Target Start/End: Original strand, 21877890 - 21878050
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttta 139  Q
    |||||||||| |||||  ||| ||| || | || ||||||||||||||||||||||| ||| || ||| |||||||||||| ||| ||   |||||||||    
T  21877890 gcaaggagagtggacaaacatcaagcggcatcatcgacatcccaactaggttggcaccccgagacacctccatcctatgccaccacac-gaaaaatttta 21877988  T
Q  140 ttnnnnnnnggg-aaaaatatatacaagaagaggggggactatgccaaaaccctcagaagaaa 201  Q
    ||       ||| |||||||  ||||| ||||||||||||||  |||||||||||| ||||||    
T  21877989 ttaaaaaaggggaaaaaataattacaa-aagaggggggactagaccaaaaccctcaaaagaaa 21878050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 31329266 - 31329351
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaa 125  Q
    |||||||||||||||| |||| |||||| | || |||||| |||||||| |||| |  ||| || ||| |||||||||||||||||    
T  31329266 gcaaggagagaggacaggcatcaagaggcatcatcgacattccaactagattggtatcccgagatacctccatcctatgccgccaa 31329351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 24123031 - 24122975
Alignment:
Q  36 ctaggcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttg 92  Q
    |||||||||||||  |||||  ||| ||||||||||||||||||| |||||||||||    
T  24123031 ctaggcaaggagaagggacagacatcaagaggaaacaccgacatctcaactaggttg 24122975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 121
Target Start/End: Original strand, 22602054 - 22602101
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccg 121  Q
    ||||||||||||||||||||||| |||   ||||||||||||||||||    
T  22602054 cgacatcccaactaggttggcaccccgcagaacccccatcctatgccg 22602101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 25538887 - 25538844
Alignment:
Q  43 aggagagaggacatgcatgaagaggaaacaccgacatcccaact 86  Q
    |||||| ||||||||||| |||||||||||||||||| ||||||    
T  25538887 aggagataggacatgcatcaagaggaaacaccgacattccaact 25538844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 125
Target Start/End: Original strand, 28122342 - 28122393
Alignment:
Q  75 gacatcccaactaggttggcacacc-gggaaacccccatcctatgccgccaa 125  Q
    |||||||||||||||||||||| || | |||||||||||||| |||||||||    
T  28122342 gacatcccaactaggttggcacccctgagaaacccccatcctctgccgccaa 28122393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 13642797 - 13642898
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttta 139  Q
    |||| |||||||||||  ||| | |||| | || |||||| |||||||| |||| || ||| || ||| ||||||||||||||||| ||| |||| ||||    
T  13642797 gcaatgagagaggacagacatcaggaggcatcatcgacattccaactagattggtaccccgagatacctccatcctatgccgccaatctcgaaaaattta 13642896  T
Q  140 tt 141  Q
    ||    
T  13642897 tt 13642898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 25247627 - 25247692
Alignment:
Q  69 aacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgcc-gccaaactctaaa 133  Q
    |||||||||||||||| |||||||| || || |||| || || ||||||||| |||||||||||||    
T  25247627 aacaccgacatcccaaataggttgggaccccaggaagcctccgtcctatgcctgccaaactctaaa 25247692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 25311411 - 25311476
Alignment:
Q  69 aacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgcc-gccaaactctaaa 133  Q
    |||||||||||||||| |||||||| || || |||| || || ||||||||| |||||||||||||    
T  25311411 aacaccgacatcccaaataggttgggaccccaggaagcctccgtcctatgcctgccaaactctaaa 25311476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 141
Target Start/End: Original strand, 29998565 - 29998662
Alignment:
Q  45 gagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaa-attttatt 141  Q
    ||||||||||| |||| |||||  | || ||||||||||||||||||||||   |  || ||| ||||| ||||||||||||||| ||| ||||||||    
T  29998565 gagagaggacaggcatcaagagacatcatcgacatcccaactaggttggcatctcaagagacctccatcgtatgccgccaaactcaaaagattttatt 29998662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 37634472 - 37634516
Alignment:
Q  149 gggaaaaatatatacaagaagaggggggactatgccaaaaccctca 194  Q
    ||||||||||| ||||| |||||||||||||| |||||||||||||    
T  37634472 gggaaaaatatttacaa-aagaggggggactaggccaaaaccctca 37634516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 36489303 - 36489343
Alignment:
Q  152 aaaaatatatacaagaagaggggggactatgccaaaaccct 192  Q
    ||||||||||||||||||||||| |||||  ||||||||||    
T  36489303 aaaaatatatacaagaagaggggagactagaccaaaaccct 36489343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 26657756 - 26657662
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaa 134  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||  ||||||||| |||||||||||| |||||||||||||    
T  26657756 gcaaggagagaggacatgcatcaagaggaaacaccgacatcccaactaagttggcacttcgggaaacctccatcctatgccaccaaactctaaaa 26657662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 16290945 - 16290844
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttta 139  Q
    ||||||||| ||||||  ||| |||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||| |||    
T  16290945 gcaaggagaaaggacaaacatcaagaggcaacaccgacatcccaactaggttggcaccccgggaaacctccatcctatgctgccaaactctaaaatatta 16290846  T
Q  140 tt 141  Q
    ||    
T  16290845 tt 16290844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 193
Target Start/End: Original strand, 24184744 - 24184894
Alignment:
Q  44 ggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt-n 142  Q
    ||||||||||||  ||| |||||| |||||||||||||||||||||||||||  ||||||| || ||||||||||||||||| |||||||| ||||||      
T  24184744 ggagagaggacaaacatcaagagggaacaccgacatcccaactaggttggcatcccgggaaccctccatcctatgccgccaatctctaaaactttattaa 24184843  T
Q  143 nnnnnngggaaaaatatatacaagaagaggggggactatgccaaaaccctc 193  Q
          ||||||||  | |||||||||||||||||||| ||||||||||||    
T  24184844 aaaaaggggaaaaaactgtacaagaagaggggggactaggccaaaaccctc 24184894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 64 - 214
Target Start/End: Original strand, 29250256 - 29250409
Alignment:
Q  64 gaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttta---ttnnnnnnngggaaaaatata 160  Q
    |||||||||||| ||| |||||||||||||||  |||||||||| || ||||||||||||||||||||||||||||   ||        |||||||||||    
T  29250256 gaggaaacaccggcataccaactaggttggcat-ccgggaaacctccgtcctatgccgccaaactctaaaattttatttttaaaaaaaaggaaaaatata 29250354  T
Q  161 tacaagaagaggggggactatgccaaaaccctcagaaga-aaataaacagaaaaa 214  Q
    |||||||||| |||| |||| |||||||||||||||||| ||| |||||||||||    
T  29250355 tacaagaagaaggggaactaggccaaaaccctcagaagacaaacaaacagaaaaa 29250409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 46 - 202
Target Start/End: Complemental strand, 26867541 - 26867384
Alignment:
Q  46 agagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnnnn 145  Q
    |||||||||| || | |||||| | || |||||||||||||||||||||||  ||||||||| |||||||| ||||||||||||||||| ||||||        
T  26867541 agagaggacaggcttcaagaggcatcatcgacatcccaactaggttggcacctcgggaaacctccatcctacgccgccaaactctaaaaatttattaaat 26867442  T
Q  146 nnngggaaaaatatatacaagaaga-ggggggactatgccaaaaccctcagaagaaaa 202  Q
       ||||||||||| ||||| | || |||||||||| ||||||||||||  |||||||    
T  26867441 aaagggaaaaatatgtacaaaaggagggggggactaggccaaaaccctccaaagaaaa 26867384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 29840950 - 29840849
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttta 139  Q
    |||| ||||| |||||||||| ||||   |||| ||||||||||||||||||||||| ||| |||||| ||||| ||||||||||| |||||||||||||    
T  29840950 gcaaagagagtggacatgcatcaagaaacaacatcgacatcccaactaggttggcaccccgagaaacctccatcatatgccgccaatctctaaaatttta 29840851  T
Q  140 tt 141  Q
    ||    
T  29840850 tt 29840849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 10568289 - 10568391
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaa-atttt 138  Q
    ||||||||||||||||  ||| |||||| |||| |||| | |||||||||||||||| ||| |||||  ||||||||||||||||||||||||| |||||    
T  10568289 gcaaggagagaggacagacatcaagaggcaacatcgacttaccaactaggttggcaccccgagaaacttccatcctatgccgccaaactctaaagatttt 10568388  T
Q  139 att 141  Q
    |||    
T  10568389 att 10568391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 40 - 194
Target Start/End: Complemental strand, 23595466 - 23595309
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaa-atttt 138  Q
    |||||||||||||||| |||| |||||| | || |||||||||||||||||||| || | | || ||| ||||||||||||||||||||| ||| |||||    
T  23595466 gcaaggagagaggacacgcatcaagaggcatcatcgacatcccaactaggttggtaccctgagagacctccatcctatgccgccaaactcaaaagatttt 23595367  T
Q  139 attnnnnnnngggaaaaatatatac--aagaagaggggggactatgccaaaaccctca 194  Q
    |||       ||||||||||| |||  ||| || ||||||||||  ||||||||||||    
T  23595366 attaaaaaaggggaaaaatatttacaaaaggaggggggggactagaccaaaaccctca 23595309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 40 - 194
Target Start/End: Complemental strand, 23604388 - 23604231
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaa-atttt 138  Q
    |||||||||||||||| |||| |||||| | || |||||||||||||||||||| || | | || ||| ||||||||||||||||||||| ||| |||||    
T  23604388 gcaaggagagaggacacgcatcaagaggcatcatcgacatcccaactaggttggtaccctgagagacctccatcctatgccgccaaactcaaaagatttt 23604289  T
Q  139 attnnnnnnngggaaaaatatatac--aagaagaggggggactatgccaaaaccctca 194  Q
    |||       ||||||||||| |||  ||| || ||||||||||  ||||||||||||    
T  23604288 attaaaaaaggggaaaaatatttacaaaaggaggggggggactagaccaaaaccctca 23604231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 45268824 - 45268915
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactcta 131  Q
    |||||||||||||||| |||| |||||| |||| |||| | ||||| |||||||||| ||| |||||| || ||||||||||||||||||||    
T  45268824 gcaaggagagaggacaggcatcaagaggcaacatcgacttaccaaccaggttggcaccccgagaaacctccttcctatgccgccaaactcta 45268915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 21593272 - 21593170
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaa-atttt 138  Q
    |||||||||||||||| |||| |||||| | || |||||| |||||||||||||||| ||| || |||  |||||||||||||||||||| ||| |||||    
T  21593272 gcaaggagagaggacaggcatcaagaggcatcatcgacattccaactaggttggcaccccgagagaccttcatcctatgccgccaaactcaaaagatttt 21593173  T
Q  139 att 141  Q
    |||    
T  21593172 att 21593170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 194
Target Start/End: Original strand, 15234775 - 15234905
Alignment:
Q  64 gaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnnnnnnngggaaaaatatatac 163  Q
    ||||||| || |||||| ||| |||||||||||  ||| ||||| |||||||||| | ||||||||||||||||||||       |||  ||| ||||||    
T  15234775 gaggaaatactgacatctcaattaggttggcacctcggaaaacctccatcctatgtctccaaactctaaaattttattaaaaaaagggggaaaaatatac 15234874  T
Q  164 aagaagaggggggactatgccaaaaccctca 194  Q
    ||| ||| ||||||||| |||||||||||||    
T  15234875 aagtagaagggggactaggccaaaaccctca 15234905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 16890063 - 16889962
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttta 139  Q
    |||||||||||||||| |||| | |||  | || ||||||||||||||||||||||| ||| || ||| ||||| ||||||||||||||| |||| ||||    
T  16890063 gcaaggagagaggacaggcatcaggagtcatcatcgacatcccaactaggttggcaccccgagatacctccatcttatgccgccaaactcaaaaaattta 16889964  T
Q  140 tt 141  Q
    ||    
T  16889963 tt 16889962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 45 - 141
Target Start/End: Complemental strand, 41600808 - 41600712
Alignment:
Q  45 gagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt 141  Q
    ||||| |||||||||| |||||| |||| ||| ||||||||||| ||||||| ||| |||||   ||||||||||||| |||||||||||| |||||    
T  41600808 gagagtggacatgcatcaagaggcaacatcgatatcccaactagattggcaccccgagaaactttcatcctatgccgctaaactctaaaatattatt 41600712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 6001511 - 6001409
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactcta-aaatttt 138  Q
    ||||||||||||||||  ||| |||||| |||| |||||| |||||||||||| |||  || ||||||  |||||||| ||||||||||||| |||||||    
T  6001511 gcaaggagagaggacaaacattaagaggcaacatcgacattccaactaggttgacaccgcgagaaaccttcatcctataccgccaaactctagaaatttt 6001412  T
Q  139 att 141  Q
    |||    
T  6001411 att 6001409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 141
Target Start/End: Complemental strand, 44431 - 44337
Alignment:
Q  45 gagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt 141  Q
    ||||| |||| ||||| || |||||||||||| ||||||| |||||||| || |||||||||| |||| |||||| |||||||||  ||||||||||    
T  44431 gagagtggacttgcatcaaaaggaaacaccgaaatcccaattaggttggtaccccgggaaacctccatactatgcagccaaactc--aaattttatt 44337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 24317484 - 24317404
Alignment:
Q  44 ggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaa 125  Q
    |||||||| |||| ||| ||||||||||||| |||| |||||||||||||||| ||||| |||| | |||||||||||||||    
T  24317484 ggagagagaacatacatcaagaggaaacaccaacataccaactaggttggcaccccggg-aacctctatcctatgccgccaa 24317404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 18036809 - 18036880
Alignment:
Q  44 ggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcct 115  Q
    ||||||||||||  ||| |||||||||||||||||||||||||| |||||||| ||| | |||| |||||||    
T  18036809 ggagagaggacaaacatcaagaggaaacaccgacatcccaactatgttggcaccccgaggaacctccatcct 18036880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 19742102 - 19742037
Alignment:
Q  69 aacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgcc-gccaaactctaaa 133  Q
    |||||||||||||||||||||||||||| ||||||| || ||||||| |||| ||||| |||||||    
T  19742102 aacaccgacatcccaactaggttggcaccccgggaagcctccatcctgtgcctgccaatctctaaa 19742037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 26393353 - 26393418
Alignment:
Q  62 aagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaac 127  Q
    ||||| ||||| |||||||||||||| |||| ||| ||| |||||| |||||||||||||||||||    
T  26393353 aagagaaaacaacgacatcccaactaagttgccaccccgcgaaacctccatcctatgccgccaaac 26393418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 21499360 - 21499427
Alignment:
Q  69 aacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatt 136  Q
    ||||||||||||||||||||||||||||  | | ||||| | |||||| ||||||||||||| |||||    
T  21499360 aacaccgacatcccaactaggttggcaccgcagaaaacctcaatcctacgccgccaaactctgaaatt 21499427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 16325609 - 16325708
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttta 139  Q
    ||||||||  |||||| |||| | ||| |||||| |||||  |||||||||||||||  | | ||||| |||||||||||||||  ||||||||||||||    
T  16325609 gcaaggagtaaggacaggcattaggagaaaacactgacatttcaactaggttggcacctcagaaaacctccatcctatgccgcc--actctaaaatttta 16325706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 17274799 - 17274705
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaa 134  Q
    |||||||||  |||||  ||| |||||| |||| ||||||||||||| |||||||||   | |||| | ||||||||||| ||||||||||||||    
T  17274799 gcaaggagaatggacagacatcaagaggcaacatcgacatcccaacttggttggcaccgtgagaaatctccatcctatgctgccaaactctaaaa 17274705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 127
Target Start/End: Original strand, 17959894 - 17959976
Alignment:
Q  45 gagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaac 127  Q
    ||||||||||| |||| |||||| |||| |||||||| |||||||| |||||  || ||||||  |||||||| |||||||||    
T  17959894 gagagaggacaggcattaagaggcaacatcgacatcctaactaggtaggcaccacgagaaaccttcatcctataccgccaaac 17959976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 29233338 - 29233297
Alignment:
Q  152 aaaaatatatacaagaagaggggggactatgccaaaaccctc 193  Q
    |||||||||||||| |||||||||||||| ||||||||||||    
T  29233338 aaaaatatatacaaaaagaggggggactaggccaaaaccctc 29233297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 24527796 - 24527864
Alignment:
Q  69 aacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgcc-gccaaactctaaaatt 136  Q
    |||||||||||||||| ||| ||| ||| ||||||| || |||||||||||| | ||||||||||||||    
T  24527796 aacaccgacatcccaattagattgacaccccgggaagcctccatcctatgcctgtcaaactctaaaatt 24527864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 4206432 - 4206499
Alignment:
Q  75 gacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc-taaaattttatt 141  Q
    ||||||| |||||||||| ||| ||  || ||| ||||||||||||||||||||| ||||||||||||    
T  4206432 gacatcctaactaggttgacactccaagagacctccatcctatgccgccaaactcataaaattttatt 4206499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 194
Target Start/End: Complemental strand, 14413426 - 14413270
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaa-atttt 138  Q
    |||||||||| |||||  ||| ||| || | || |||||||||||||||||||||||  || || ||| ||||||| ||| |||| |||| ||| | |||    
T  14413426 gcaaggagagtggacaaacatcaagcggcatcatcgacatcccaactaggttggcacctcgagacacctccatcctctgctgccacactcgaaataattt 14413327  T
Q  139 attnnnnnnnggg-aaaaatatatacaagaagaggggggactatgccaaaaccctca 194  Q
    |||       ||| |||||||  ||||| |||||||||||||| |||||||||||||    
T  14413326 attaaaaaagggggaaaaataattacaaaaagaggggggactaggccaaaaccctca 14413270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 16932555 - 16932651
Alignment:
Q  43 aggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt 141  Q
    |||||||||||||| ||| |||  |||||| |||||| ||||||| |||||||| |||   ||| |||||||||| |||||||  ||| ||||||||||    
T  16932555 aggagagaggacatacatcaaggagaaacaacgacattccaactatgttggcaccccgatgaactcccatcctataccgccaa--tctcaaattttatt 16932651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 43856173 - 43856118
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc 129  Q
    ||||||||||||||||||||||| |||   |||| ||||||| |||||||||||||    
T  43856173 cgacatcccaactaggttggcaccccgcagaacctccatcctgtgccgccaaactc 43856118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 43848102 - 43848176
Alignment:
Q  51 ggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaa 125  Q
    ||||| |||| ||| |||| || | ||||||||||||||||||||| |||   ||||| ||||||||||||||||    
T  43848102 ggacaggcatcaaggggaagcaacaacatcccaactaggttggcaccccgcagaaccctcatcctatgccgccaa 43848176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 14335396 - 14335295
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttta 139  Q
    |||| ||||||||||| |||| | |||| | || |||||  |||||||| |||| || ||| || ||| ||||||||||||||||| ||| |||| ||||    
T  14335396 gcaacgagagaggacaggcatcaggaggcatcatcgacaatccaactagattggtaccccgagatacctccatcctatgccgccaagctcgaaaaattta 14335297  T
Q  140 tt 141  Q
    ||    
T  14335296 tt 14335295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 40263681 - 40263730
Alignment:
Q  76 acatcccaactaggttggcacaccgggaaacccccatcctatgccgccaa 125  Q
    ||||||||||||||||||||| | |   ||||||||||||||||||||||    
T  40263681 acatcccaactaggttggcaccctgcagaacccccatcctatgccgccaa 40263730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 64 - 202
Target Start/End: Complemental strand, 52774 - 52637
Alignment:
Q  64 gaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnnnnnnngggaaaaatatatac 163  Q
    ||||||||||||| |||||||||||||||||||   |||||||| || |||||| || ||||||| ||||||||||||       || ||||||||||||    
T  52774 gaggaaacaccgaaatcccaactaggttggcaccttgggaaacctccgtcctataccaccaaactttaaaattttattaaaaaaagg-aaaaatatatac 52676  T
Q  164 aagaagaggggggactatgccaaaaccctcagaagaaaa 202  Q
    || |||||||||||||| |||||||||||||||||||||    
T  52675 aaaaagaggggggactaggccaaaaccctcagaagaaaa 52637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 103773 - 103701
Alignment:
Q  62 aagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaa 134  Q
    |||||| |||| ||||||||||||||||||||||| ||| |||| | ||||||||||||| ||||||||||||    
T  103773 aagaggcaacatcgacatcccaactaggttggcaccccgagaaatctccatcctatgccgtcaaactctaaaa 103701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 138
Target Start/End: Original strand, 55765 - 55863
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttt 138  Q
    |||||||||| |||||  ||| ||| || | || ||||||||||||||||||||||| |||  | ||| |||||||||||| ||| |||| ||||||||    
T  55765 gcaaggagagtggacagacatcaagcggcatcatcgacatcccaactaggttggcaccccgacacacctccatcctatgccaccacactcgaaaatttt 55863  T

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Target: scaffold0195 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0195
Description:

Target: scaffold0195; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 64 - 202
Target Start/End: Original strand, 9000 - 9133
Alignment:
Q  64 gaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnnnnnnngggaaaaatatatac 163  Q
    |||||||||||||||| |||||||||||||||  |||||||||| || |||||||||| |||||||||||||||||||        ||||||||||||||    
T  9000 gaggaaacaccgacataccaactaggttggcat-ccgggaaacctccgtcctatgccgtcaaactctaaaattttattaaaaaaa-ggaaaaatatatac 9097  T
Q  164 aagaagaggggggactatgccaaaaccctcagaagaaaa 202  Q
       |||||||||||||| |||||||||||||||||||||    
T  9098 ---aagaggggggactaggccaaaaccctcagaagaaaa 9133  T

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Target: scaffold0195; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 64 - 202
Target Start/End: Original strand, 14389 - 14522
Alignment:
Q  64 gaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnnnnnnngggaaaaatatatac 163  Q
    |||||||||||||||| |||||||||||||||  |||||||||| || |||||||||| |||||||||||||||||||        ||||||||||||||    
T  14389 gaggaaacaccgacataccaactaggttggcat-ccgggaaacctccgtcctatgccgtcaaactctaaaattttattaaaaaaa-ggaaaaatatatac 14486  T
Q  164 aagaagaggggggactatgccaaaaccctcagaagaaaa 202  Q
       |||||||||||||| |||||||||||||||||||||    
T  14487 ---aagaggggggactaggccaaaaccctcagaagaaaa 14522  T

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Target: scaffold0911 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0911
Description:

Target: scaffold0911; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 40 - 193
Target Start/End: Original strand, 2208 - 2361
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttta 139  Q
    |||||| || ||||||  ||| || ||||||||||||| | |||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  2208 gcaaggggaaaggacagacatcaaaaggaaacaccgacgttccaactagattggcaccccgggaaacctccatcctatgccgccaaactctaaaatttta 2307  T
Q  140 tt-nnnnnnngggaaaaatatatacaagaagaggggggactatgccaaaaccctc 193  Q
    ||        ||||||||||  ||||| |||||||||||||| ||||||||||||    
T  2308 ttaaaaaaaggggaaaaataattacaa-aagaggggggactaggccaaaaccctc 2361  T

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Target: scaffold0607 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 296 - 387
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactcta 131  Q
    ||||| ||||||||||||||| |||||| |||| |||| | |||||||| ||||||| ||| |||||| |||||||||||||||||||||||    
T  296 gcaagaagagaggacatgcatcaagaggcaacatcgacttaccaactagtttggcaccccgagaaacctccatcctatgccgccaaactcta 387  T

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Target: scaffold0093 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 40 - 202
Target Start/End: Complemental strand, 16113 - 15949
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc-taaaatttt 138  Q
    |||||||||| |||||  ||| ||| || | || ||||||||||||||||||||||| ||| || ||| |||| ||||||||||| ||||  ||||||||    
T  16113 gcaaggagagtggacaaacatcaagcggcatcatcgacatcccaactaggttggcactccgagacacctccatgctatgccgccacactcgaaaaatttt 16014  T
Q  139 att-nnnnnnngggaaaaatatatacaagaagaggggggactatgccaaaaccctcagaagaaaa 202  Q
    |||        ||||||||||  ||||| |||||||||||||| ||||||||||||| |||||||    
T  16013 attaaaaaaaggggaaaaataattacaaaaagaggggggactaggccaaaaccctcaaaagaaaa 15949  T

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Target: scaffold0291 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 68 - 233
Target Start/End: Original strand, 15567 - 15738
Alignment:
Q  68 aaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnnnnnnnggg-----aaaaatatata 162  Q
    |||||||||||| ||||| |||||||||| |  ||||| | || ||||||||||||||||||||||||||||||         |     |||||||| ||    
T  15567 aaacaccgacattccaaccaggttggcaccctaggaaatctccgtcctatgccgccaaactctaaaattttattaaaaaaaatggaaaaaaaaatattta 15666  T
Q  163 caagaagaggggggactatgccaaaaccctcagaag-aaaataaacagaaaaaactaaaacatactacaaca 233  Q
    |||| ||||||||||||| |||||||||||| |||| |||| ||||||||||  | |||||| |||||||||    
T  15667 caaggagaggggggactaagccaaaaccctctgaagaaaaacaaacagaaaatgcgaaaacagactacaaca 15738  T

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Target: scaffold0291; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 21897 - 21957
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaa 134  Q
    ||||||||||||||||||||||  ||| || ||| ||||||||||||||||  ||||||||    
T  21897 cgacatcccaactaggttggcatcccgagagacctccatcctatgccgccacgctctaaaa 21957  T

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Target: scaffold0006 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 134
Target Start/End: Original strand, 36662 - 36755
Alignment:
Q  41 caaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaa 134  Q
    ||||||||||| |||| ||| |||||| |||| |||||||||||||||||||| ||  || |||||| ||| | ||||||||||||||||||||    
T  36662 caaggagagagtacatacatcaagaggcaacatcgacatcccaactaggttggtacctcgagaaacctccaacttatgccgccaaactctaaaa 36755  T

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Target: scaffold0886 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 46 - 134
Target Start/End: Complemental strand, 2865 - 2777
Alignment:
Q  46 agagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaa 134  Q
    |||||| |||| ||| |||||| |||| |||||||||||||||||||| ||  || |||||| ||||||||||||||||||||| ||||    
T  2865 agagagaacatacatcaagaggcaacatcgacatcccaactaggttggtacctcgagaaacctccatcctatgccgccaaactcaaaaa 2777  T

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Target: scaffold0166 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 141
Target Start/End: Original strand, 7998 - 8086
Alignment:
Q  51 ggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt 141  Q
    |||||||||| ||||||||| ||||||||||||||||| ||||||  |||||||||| || || ||||| |||||||||  ||||||||||    
T  7998 ggacatgcatcaagaggaaataccgacatcccaactagattggcatcccgggaaacctccctcatatgcagccaaactc--aaattttatt 8086  T

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Target: scaffold0123 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 215
Target Start/End: Original strand, 29985 - 30140
Alignment:
Q  67 gaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttattnnnnnnn-gggaaaaa------tat 159  Q
    |||||||||||||||||||||||||||||  |||| |||||  | |||||||||| || ||| |||||||| |||        ||||||||      |||    
T  29985 gaaacaccgacatcccaactaggttggcatcccggaaaaccttcgtcctatgccgtcagactttaaaatttaattaaaaaaatgggaaaaaaatatatat 30084  T
Q  160 atacaagaagaggggggactatgccaaaaccctcagaagaaaataaacagaaaaaa 215  Q
    ||||||||||||||||||||  ||||||||||||| ||  ||||||||||||||||    
T  30085 atacaagaagaggggggacttggccaaaaccctcaaaaataaataaacagaaaaaa 30140  T

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Target: scaffold0013 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 101033 - 100967
Alignment:
Q  72 accgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaatttta 139  Q
    |||||||| ||||| |||||||||| |||||||||| || ||||||||||||||||||||||||||||    
T  101033 accgacattccaaccaggttggcac-ccgggaaacctccgtcctatgccgccaaactctaaaatttta 100967  T

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Target: scaffold0114 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 197
Target Start/End: Original strand, 2976 - 3119
Alignment:
Q  51 ggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt-nnnnnnng 149  Q
    |||||||||| ||||||||||||||||||||| | ||||||||||  ||||| |||| ||||||||| || ||| ||||  ||||||||||        |    
T  2976 ggacatgcatcaagaggaaacaccgacatcccgattaggttggcatcccggggaacctccatcctataccaccacactc--aaattttattaaaaaaggg 3073  T
Q  150 ggaaaaatatatacaagaagaggggggactatgccaaaaccctcagaa 197  Q
    |||||||||  ||||  ||||||||||||||  |||||||||||||||    
T  3074 ggaaaaataattaca--aagaggggggactagaccaaaaccctcagaa 3119  T

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Target: scaffold0111 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 141
Target Start/End: Original strand, 41235 - 41328
Alignment:
Q  51 ggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc---taaaattttatt 141  Q
    |||||||||| ||| |||| || ||| ||||||||||||||||||| |||   ||||| ||||||||||||||||||||   ||||||||||||    
T  41235 ggacatgcatcaaggggaagcaacgaaatcccaactaggttggcaccccgcagaaccctcatcctatgccgccaaactcagataaaattttatt 41328  T

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Target: scaffold0029 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 129476 - 129409
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt 141  Q
    ||||||||||||||||||||||| ||| || ||| |||||||||||| ||| |||| |||||||||||    
T  129476 cgacatcccaactaggttggcaccccgagacacctccatcctatgccaccacactcgaaaattttatt 129409  T

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Target: scaffold0002 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 307293 - 307226
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt 141  Q
    ||||||||||||||||||||||| ||| || ||| |||||||||||| ||| |||| |||||||||||    
T  307293 cgacatcccaactaggttggcaccccgagacacctccatcctatgccaccacactcgaaaattttatt 307226  T

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Target: scaffold0134 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 2570 - 2481
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc 129  Q
    ||||||||| ||||||||||| | |||  | |  ||||||||||||||||||||||| ||| || | | |||||||||||||||| ||||    
T  2570 gcaaggagaaaggacatgcatcaggagacatcgtcgacatcccaactaggttggcaccccgagacatctccatcctatgccgccagactc 2481  T

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Target: scaffold0045 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 80411 - 80342
Alignment:
Q  53 acatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgc 122  Q
    |||||||| || | |||||| | ||||||||||||||||||||| ||| |||| | ||||||||||||||    
T  80411 acatgcatcaacatgaaacagcaacatcccaactaggttggcaccccgcgaaatctccatcctatgccgc 80342  T

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Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 3417 - 3466
Alignment:
Q  76 acatcccaactaggttggcacaccgggaaacccccatcctatgccgccaa 125  Q
    ||||||||||||||||||||| |||   ||||||||||||||||||||||    
T  3417 acatcccaactaggttggcactccgcagaacccccatcctatgccgccaa 3466  T

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Target: scaffold0292 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0292
Description:

Target: scaffold0292; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 21309 - 21253
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcac 96  Q
    |||||||||| ||||| |||| |||||| | || |||||||||||||||||||||||    
T  21309 gcaaggagagtggacaggcatcaagaggcatcatcgacatcccaactaggttggcac 21253  T

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Target: scaffold0265 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 19591 - 19651
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaa 134  Q
    ||||||||||||||||||||||| ||| || ||| |||||||||||| ||| |||| ||||    
T  19591 cgacatcccaactaggttggcaccccgagacacctccatcctatgccaccacactcgaaaa 19651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1821 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1821
Description:

Target: scaffold1821; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 1035 - 980
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactc 129  Q
    ||||||||||||||||||||||| ||| || | | ||||||| |||||||||||||    
T  1035 cgacatcccaactaggttggcaccccgagacatcgccatcctttgccgccaaactc 980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1667 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1667
Description:

Target: scaffold1667; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 726 - 792
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt 141  Q
    ||||||||| |||||||||||||  ||   |||| ||||||||||||||||||||| |||||||||||    
T  726 cgacatcccgactaggttggcacctcgaagaacctccatcctatgccgccaaactc-aaaattttatt 792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 194
Target Start/End: Original strand, 5285 - 5441
Alignment:
Q  40 gcaaggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaa-atttt 138  Q
    |||||||||| |||||  ||| ||| || | || |||||||||||||||||||||||  || || ||| ||||||| ||| |||| |||| ||| | |||    
T  5285 gcaaggagagtggacaaacatcaagcggcatcatcgacatcccaactaggttggcacctcgagacacctccatcctctgctgccacactcgaaataattt 5384  T
Q  139 attnnnnnnnggg-aaaaatatatacaagaagaggggggactatgccaaaaccctca 194  Q
    |||       ||| |||||||  ||||| |||||||||||||| |||||||||||||    
T  5385 attaaaaaagggggaaaaataattacaaaaagaggggggactaggccaaaaccctca 5441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 13781 - 13734
Alignment:
Q  73 ccgacatcccaactaggttggcacaccgggaaacccccatcctatgcc 120  Q
    |||||||||||||||||||||||| |||||||||  || |||||||||    
T  13781 ccgacatcccaactaggttggcaccccgggaaacttccgtcctatgcc 13734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 4493 - 4434
Alignment:
Q  75 gacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaa 134  Q
    ||||||||||||||||||||||  || || ||| ||||||||||||||||  ||||||||    
T  4493 gacatcccaactaggttggcacctcgagagacctccatcctatgccgccacgctctaaaa 4434  T

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Target: scaffold0196 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 206
Target Start/End: Original strand, 31328 - 31367
Alignment:
Q  167 aagaggggggactatgccaaaaccctcagaagaaaataaa 206  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  31328 aagaggggggactatgccaataccctcaaaagaaaataaa 31367  T

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Target: scaffold0196; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 96
Target Start/End: Complemental strand, 831 - 797
Alignment:
Q  62 aagaggaaacaccgacatcccaactaggttggcac 96  Q
    |||||| ||||||||||||||||||||||||||||    
T  831 aagaggcaacaccgacatcccaactaggttggcac 797  T

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Target: scaffold0044 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 20913 - 20847
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttatt 141  Q
    ||||||||| |||||||||||||  ||   |||| ||||||||||||||||||||| |||||||||||    
T  20913 cgacatcccgactaggttggcacctcgaagaacctccatcctatgccgccaaactc-aaaattttatt 20847  T

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Target: scaffold0295 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 18128 - 18173
Alignment:
Q  149 gggaaaaatatatacaagaagaggggggactatgccaaaaccctcag 195  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||||||    
T  18128 gggaaaaatatgtacaa-aagaggggggactaggccaaaaccctcag 18173  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 140
Target Start/End: Complemental strand, 173923 - 173857
Alignment:
Q  74 cgacatcccaactaggttggcacaccgggaaacccccatcctatgccgccaaactctaaaattttat 140  Q
    ||||||||||||||||||||||| ||| || ||| ||||| ||||| ||||| ||| |||| |||||    
T  173923 cgacatcccaactaggttggcaccccgagatacctccatcttatgctgccaatctcaaaaagtttat 173857  T

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Target: scaffold0741 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0741
Description:

Target: scaffold0741; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 6723 - 6679
Alignment:
Q  149 gggaaaaatatatacaagaagaggggggactatgccaaaaccctca 194  Q
    ||||||||||| ||||| |||||||||||||| |||||||||||||    
T  6723 gggaaaaatatttacaa-aagaggggggactaggccaaaaccctca 6679  T

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Target: scaffold0257 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 16282 - 16233
Alignment:
Q  43 aggagagaggacatgcatgaagaggaaacaccgacatcccaactaggttg 92  Q
    |||||| |||||||| || ||||| || ||||||||||||||||||||||    
T  16282 aggagaaaggacatgtatcaagagaaagcaccgacatcccaactaggttg 16233  T

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Target: scaffold0065 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 42821 - 42777
Alignment:
Q  149 gggaaaaatatatacaagaagaggggggactatgccaaaaccctca 194  Q
    ||||||||||| ||||| |||||||||||||| |||||||||||||    
T  42821 gggaaaaatatttacaa-aagaggggggactaggccaaaaccctca 42777  T

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Target: scaffold0001 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 20786 - 20819
Alignment:
Q  161 tacaagaagaggggggactatgccaaaaccctca 194  Q
    |||||||||||||||||||| |||||||||||||    
T  20786 tacaagaagaggggggactaggccaaaaccctca 20819  T

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