View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19673_low_2 (Length: 583)
Name: NF19673_low_2
Description: NF19673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19673_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 2174667 - 2174876
Alignment:
| Q |
1 |
acctggacaagggtactaggccaccacatatgggctggctccaccacgtacttcctcagcaacccagcccatccgtatcccaggacctacaaatacacat |
100 |
Q |
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| T |
2174667 |
acctggacaagggtactaggccaccacatatgggctggctccaccacgtacttcctcagcaacccagcccatccgtatcccaggacctacaaatacacat |
2174766 |
T |
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| Q |
101 |
tgtcagtaaagaaggcataaatcaaaggtccatttccatcacaa-tttgttcaattattacaaaagcaatagctaatgtatgtttttagggcatgttatg |
199 |
Q |
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| T |
2174767 |
tgtcactaaagaaggcataaatcaaaggtccatttccatcacaattttgttcaattattacaaaagcaatagctaatgtatgtttttagggcatgttatg |
2174866 |
T |
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| Q |
200 |
aaacaaattg |
209 |
Q |
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|||||||||| |
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| T |
2174867 |
aaacaaattg |
2174876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 274 - 455
Target Start/End: Original strand, 2174941 - 2175122
Alignment:
| Q |
274 |
attctttaacaagtttctcaaaagcatgtgttagcaaaacccttagtaaccaaacatcgtgcaatcaaaatcaacatcagtagctcccaaatgaatatct |
373 |
Q |
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| T |
2174941 |
attctttaaccagtttctcaaaagcatgtgttagcaaaacccttagcaaccaaacatcgtgcaatcaaaatcaatatcagtagctcccaaataaatatct |
2175040 |
T |
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| Q |
374 |
ccgaaattaatctaaaatattaacatnnnnnnntacaccctttcgatgaaaaataaataaatacatcgaaatggttaaccaa |
455 |
Q |
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| T |
2175041 |
tcgaaatgaatctaaaatattaacataaaaaaatacaccctttggatgaaaaataaataaatacatccaaatggttaaccaa |
2175122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 502 - 566
Target Start/End: Original strand, 2175602 - 2175666
Alignment:
| Q |
502 |
taacaagtcaaaatgagatatataaacaaacagatctactacctaacataagatttgaatcatat |
566 |
Q |
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| T |
2175602 |
taacaagtcaaaatgaaatatataaacaaacagatctactatctaacataagatttgaatcatat |
2175666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 36900522 - 36900447
Alignment:
| Q |
7 |
acaagggtactaggccaccacatatgggctggctccaccacgtacttcctcagcaacccagcccatccgtatccca |
82 |
Q |
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| T |
36900522 |
acaagggtaccaggccaccacatatgagctggttcaacaacatacttcctaagcaaaccagcccatccatatccca |
36900447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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