View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19673_low_4 (Length: 493)

Name: NF19673_low_4
Description: NF19673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19673_low_4
NF19673_low_4
[»] chr5 (4 HSPs)
chr5 (4-475)||(38434635-38435106)
chr5 (12-199)||(26354249-26354436)
chr5 (12-200)||(9815643-9815831)
chr5 (296-344)||(9816746-9816794)
[»] chr3 (19 HSPs)
chr3 (4-191)||(19956685-19956872)
chr3 (4-193)||(19819161-19819350)
chr3 (4-197)||(19832471-19832664)
chr3 (4-192)||(19838994-19839182)
chr3 (4-198)||(19812884-19813078)
chr3 (4-199)||(20033656-20033851)
chr3 (4-197)||(26653749-26653942)
chr3 (4-199)||(19951725-19951920)
chr3 (4-171)||(20035953-20036120)
chr3 (6-200)||(20046723-20046917)
chr3 (6-199)||(26647607-26647800)
chr3 (12-200)||(20015522-20015710)
chr3 (4-194)||(19990126-19990316)
chr3 (49-150)||(20007643-20007744)
chr3 (4-108)||(24839387-24839491)
chr3 (4-214)||(19849597-19849807)
chr3 (4-65)||(19854101-19854162)
chr3 (4-65)||(19858673-19858734)
chr3 (296-342)||(20032689-20032735)
[»] chr8 (3 HSPs)
chr8 (4-197)||(22655640-22655833)
chr8 (4-111)||(11544671-11544778)
chr8 (4-64)||(22689130-22689190)
[»] chr1 (1 HSPs)
chr1 (6-198)||(1717823-1718015)
[»] chr2 (1 HSPs)
chr2 (4-111)||(39191386-39191493)
[»] chr4 (1 HSPs)
chr4 (122-200)||(6397102-6397180)
[»] chr7 (3 HSPs)
chr7 (124-199)||(12579410-12579485)
chr7 (124-201)||(12495311-12495388)
chr7 (124-201)||(12519115-12519192)


Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 4 - 475
Target Start/End: Complemental strand, 38435106 - 38434635
Alignment:
Q  4 aatatctaccacatagagatgctatgtaatttagaattgatcaagatgttccaagttatgtgcttaggttaaatgagactaaatcaattgcttagaaaaa 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38435106 aatatctaccacatagagatgctatgtaatttagaattgatcaagatgttccaagttatgtgcttaggttaaatgagactaaatcaattgcttagaaaaa 38435007  T
Q  104 ctactgcaatctcatatttgataaaaatttgtattttccaccaagattatttgagccagatgttaccaagcgttgtgcaaggtggtggaagcaatcgaca 203  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  38435006 ctaccgcagtctcatatttgataaaaatttgtattttccaccaagattatttgaggcagatgttaccaagcgttatgcaaggtggtggaagcaatcgaca 38434907  T
Q  204 ttaggttgcaaagatgacatatatgcatttatgagtgtctgttgtacttgtgatcatgccaaaatgagatatttttctatgctttaacattttctttagt 303  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38434906 ttaggttgcaacgatgacatatatgcatttatgagtgtctgttgtgcttgtgatcatgccaaaatgagatatttttctatgctttaacattttctttagt 38434807  T
Q  304 agtattggcatgactaaaacatattttgctatgcttttacacacatatgaggaaatctggtgtgaaaactttgtcaaggaaaagtgatgaaacctcaaga 403  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38434806 agtattggcatgactaacacatattttgctatgcttttacacacatatgaggaaatctggtgtgaaaactttgtcaaggaaaagtgatgaaacctcaaga 38434707  T
Q  404 aattgattgctaactcactactgcaattgaaacgtcctcacactaccatccaaaaacacatgatggacaagt 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38434706 aattgattgctaactcactactgcaattgaaacgtcctcacactaccatccaaaaacacatgatggacaagt 38434635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 26354436 - 26354249
Alignment:
Q  12 ccacatagagatgctatgtaatttagaattgatcaagatgttccaagttatgtgcttaggttaaatgagactaaatcaattgcttagaaaaactactgca 111  Q
    |||||||||| ||||||| ||||| |||| ||||||||||||||||||||||||| ||| || |||||||||||||  ||||||| ||||||||| || |    
T  26354436 ccacatagagttgctatgcaatttggaatggatcaagatgttccaagttatgtgcctagatttaatgagactaaattcattgcttggaaaaactattgta 26354337  T
Q  112 atctcatatttgataaaaatttgtattttccaccaagattatttgagccagatgttaccaagcgttgtgcaaggtggtggaagcaatc 199  Q
      || |||||||||| | |||||||||| ||||||||| | | |||| ||||||| ||||  |||| ||||| |||||||| ||||||    
T  26354336 ggcttatatttgatacagatttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggaggcaatc 26354249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 9815643 - 9815831
Alignment:
Q  12 ccacatagagatgctatgtaatttagaattgatcaagatgttccaagttatgtgcttaggttaaatgagactaaatcaattgcttagaaaaactactgca 111  Q
    |||||||||| ||||||| |||||  ||| |||||||||||||||| |||||||| ||| || ||||||||||||   || |||| ||||||||| || |    
T  9815643 ccacatagagttgctatgcaatttgaaatggatcaagatgttccaacttatgtgcctagattcaatgagactaaactcatggcttggaaaaactattgta 9815742  T
Q  112 atctcatatttgataaaaatttgtattttccaccaagattatttgagccagatgttaccaagcgttgtgcaaggtggtggaagcaatcg 200  Q
      || |||| |||| ||||||||||||||||||||||| | |||||| ||||||||||||  || | | ||| ||||||||||||||||    
T  9815743 ggcttatatctgatcaaaatttgtattttccaccaagactttttgaggcagatgttaccacacgatatacaatgtggtggaagcaatcg 9815831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 9816746 - 9816794
Alignment:
Q  296 tctttagtagtattggcatgactaaaacatattttgctatgcttttaca 344  Q
    ||||||||| |||||||||||||||  ||| |||| |||||||||||||    
T  9816746 tctttagtaatattggcatgactaactcatgttttactatgcttttaca 9816794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 19956685 - 19956872
Alignment:
Q  4 aatatctaccacatagagatgctatgtaatttagaattgatcaagatgttccaagttatgtgcttaggttaaatgagactaaatcaattgcttagaaaaa 103  Q
    ||||||| |||||||||| ||||||| ||||| |||||||||||||||||||  |||||||   |||||| |||||||||||||  ||||||| ||||||    
T  19956685 aatatcttccacatagagttgctatgcaatttggaattgatcaagatgttccgggttatgtagctaggttcaatgagactaaatacattgcttggaaaaa 19956784  T
Q  104 ctactgcaatctcatatttgataaaaatttgtattttccaccaagattatttgagccagatgttaccaagcgttgtgcaaggtggtgg 191  Q
    ||||||||  | ||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||  |||| |||||||||||||    
T  19956785 ctactgcagacccatatatgataaaaacttgtattttccaccaagattatttgaggcagatgttaccacacgttatgcaaggtggtgg 19956872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 4 - 193
Target Start/End: Original strand, 19819161 - 19819350
Alignment:
Q  4 aatatctaccacatagagatgctatgtaatttagaattgatcaagatgttccaagttatgtgcttaggttaaatgagactaaatcaattgcttagaaaaa 103  Q
    ||||||| |||||||||| ||||||| | ||| |||||||||||||||||||  ||||||||  |||||| |||||||||||||  ||||||| ||||||    
T  19819161 aatatcttccacatagagttgctatgcagtttggaattgatcaagatgttcctggttatgtggctaggttcaatgagactaaatacattgcttggaaaaa 19819260  T
Q  104 ctactgcaatctcatatttgataaaaatttgtattttccaccaagattatttgagccagatgttaccaagcgttgtgcaaggtggtggaa 193  Q
    ||||||||  |  |||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||  |||| |||||||||||||||    
T  19819261 ctactgcaggccaatatctgataaaaacttgtattttccaccaagattatttgaggcagatgttaccacacgttatgcaaggtggtggaa 19819350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 4 - 197
Target Start/End: Original strand, 19832471 - 19832664
Alignment:
Q  4 aatatctaccacatagagatgctatgtaatttagaattgatcaagatgttccaagttatgtgcttaggttaaatgagactaaatcaattgcttagaaaaa 103  Q
    ||||||| |||||||||| ||||||| |  || |||||||||||||||||||  ||||||||  |||||| |||||||||||||  ||||||| ||||||    
T  19832471 aatatcttccacatagagttgctatgcagattggaattgatcaagatgttcctggttatgtggctaggttcaatgagactaaatacattgcttggaaaaa 19832570  T
Q  104 ctactgcaatctcatatttgataaaaatttgtattttccaccaagattatttgagccagatgttaccaagcgttgtgcaaggtggtggaagcaa 197  Q
    ||||||||  |  |||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||  |||| |||||||||||||||||||    
T  19832571 ctactgcaggccaatatctgataaaaacttgtattttccaccaagattatttgaggcagatgttaccacacgttatgcaaggtggtggaagcaa 19832664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 4 - 192
Target Start/End: Original strand, 19838994 - 19839182
Alignment:
Q  4 aatatctaccacatagagatgctatgtaatttagaattgatcaagatgttccaagttatgtgcttaggttaaatgagactaaatcaattgcttagaaaaa 103  Q
    ||||||| |||||||||| ||||||| ||||  |||| ||||||||||||||| ||||||||  |||||| |||| ||||||||  ||||||| ||||||    
T  19838994 aatatcttccacatagagttgctatgcaattcggaatggatcaagatgttccaggttatgtggctaggttcaatgtgactaaatacattgcttggaaaaa 19839093  T
Q  104 ctactgcaatctcatatttgataaaaatttgtattttccaccaagattatttgagccagatgttaccaagcgttgtgcaaggtggtgga 192  Q
    ||| ||||  | ||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||  |||| ||||||||||||||    
T  19839094 ctattgcagacccatatatgataaaaacttgtattttccaccaagattatttgaggcagatgttaccatacgttatgcaaggtggtgga 19839182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 4 - 198
Target Start/End: Original strand, 19812884 - 19813078
Alignment:
Q  4 aatatctaccacatagagatgctatgtaatttagaattgatcaagatgttccaagttatgtgcttaggttaaatgagactaaatcaattgcttagaaaaa 103  Q
    ||||||| |||||||||| ||||||| ||||| |||||||||||||||||||||||||||||| |||||| ||| | ||||||   ||||| | ||||||    
T  19812884 aatatcttccacatagagttgctatgcaatttggaattgatcaagatgttccaagttatgtgcctaggttcaataaaactaaagtgattgcatggaaaaa 19812983  T
Q  104 ctactgcaatctcatatttgataaaaatttgtattttccaccaagattatttgagccagatgttaccaagcgttgtgcaaggtggtggaagcaat 198  Q
    ||||||||  ||||||| ||||||||| |||||||||||||||||| | |||||| |||||||||||| || || ||  | ||||||||||||||    
T  19812984 ctactgcaggctcatatctgataaaaaattgtattttccaccaagactttttgaggcagatgttaccacgcattatgtcaagtggtggaagcaat 19813078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 4 - 199
Target Start/End: Complemental strand, 20033851 - 20033656
Alignment:
Q  4 aatatctaccacatagagatgctatgtaatttagaattgatcaagatgttccaagttatgtgcttaggttaaatgagactaaatcaattgcttagaaaaa 103  Q
    ||||||| |||||||||| ||||||| ||||| |||| ||||||||||||||||||||||||| |||||| || |||||||||   | ||||| || |||    
T  20033851 aatatcttccacatagagttgctatgcaatttggaatggatcaagatgttccaagttatgtgcctaggttcaacgagactaaagagaatgcttggagaaa 20033752  T
Q  104 ctactgcaatctcatatttgataaaaatttgtattttccaccaagattatttgagccagatgttaccaagcgttgtgcaaggtggtggaagcaatc 199  Q
    ||||||    | ||| | |||| |||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||  ||||||||||||||    
T  20033751 ctactgtcggcccatctctgatgaaaatttgtattttccaccaagattatttgaggcagatgttaccacgcgttatgcaaactggtggaagcaatc 20033656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 4 - 197
Target Start/End: Original strand, 26653749 - 26653942
Alignment:
Q  4 aatatctaccacatagagatgctatgtaatttagaattgatcaagatgttccaagttatgtgcttaggttaaatgagactaaatcaattgcttagaaaaa 103  Q
    ||||||| |||||||||| ||||||| ||||| ||||||| |||||||||||||||||||||  |||||| |||||||||||||  ||||||| | ||||    
T  26653749 aatatcttccacatagagttgctatgcaatttggaattgaccaagatgttccaagttatgtggctaggttcaatgagactaaatacattgcttgggaaaa 26653848  T
Q  104 ctactgcaatctcatatttgataaaaatttgtattttccaccaagattatttgagccagatgttaccaagcgttgtgcaaggtggtggaagcaa 197  Q
    ||||||||  |  || | | ||||||||||||||||||||||||| || |||||| ||||||| | || ||||| ||||| |||||||||||||    
T  26653849 ctactgcaggcctatttcttataaaaatttgtattttccaccaaggttgtttgaggcagatgtcatcatgcgttatgcaaagtggtggaagcaa 26653942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 4 - 199
Target Start/End: Original strand, 19951725 - 19951920
Alignment:
Q  4 aatatctaccacatagagatgctatgtaatttagaattgatcaagatgttccaagttatgtgcttaggttaaatgagactaaatcaattgcttagaaaaa 103  Q
    ||||||| |||||||||| ||||||| |||||  ||| |||||||||||||| |||||||||| |||||| ||| | ||||||   ||||||| ||||||    
T  19951725 aatatcttccacatagagttgctatgcaatttgcaatggatcaagatgttccgagttatgtgcctaggttcaataaaactaaagtgattgcttggaaaaa 19951824  T
Q  104 ctactgcaatctcatatttgataaaaatttgtattttccaccaagattatttgagccagatgttaccaagcgttgtgcaaggtggtggaagcaatc 199  Q
    ||||||||  | ||||| |||||||||||||||||||||| ||| | | |||||| | |||| || || ||||| ||||| ||||||| |||||||    
T  19951825 ctactgcaggcccatatctgataaaaatttgtattttccatcaaaaatttttgaggctgatgctagcatgcgttatgcaaagtggtgggagcaatc 19951920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 4 - 171
Target Start/End: Complemental strand, 20036120 - 20035953
Alignment:
Q  4 aatatctaccacatagagatgctatgtaatttagaattgatcaagatgttccaagttatgtgcttaggttaaatgagactaaatcaattgcttagaaaaa 103  Q
    ||||||| |||||||||| ||||||| ||||| ||||||||||||||||||| ||||| |||  |||||  ||| | ||||||   ||||||| || |||    
T  20036120 aatatcttccacatagagttgctatgcaatttggaattgatcaagatgttccgagttacgtggctaggtgcaataaaactaaagtgattgcttggagaaa 20036021  T
Q  104 ctactgcaatctcatatttgataaaaatttgtattttccaccaagattatttgagccagatgttacca 171  Q
    ||||||||  ||||||| ||||||||| |||||||||||||||||| | |||||| ||||||||||||    
T  20036020 ctactgcaggctcatatctgataaaaaattgtattttccaccaagactttttgaggcagatgttacca 20035953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 6 - 200
Target Start/End: Original strand, 20046723 - 20046917
Alignment:
Q  6 tatctaccacatagagatgctatgtaatttagaattgatcaagatgttccaagttatgtgcttaggttaaatgagactaaatcaattgcttagaaaaact 105  Q
    ||||| |||||||||| | ||||| ||||| || |||| ||||||||||| ||||||||||  ||||  ||  | |  || || | ||||| ||| ||||    
T  20046723 tatcttccacatagagtttctatgcaatttggacttgaccaagatgttccgagttatgtgccaaggtgcaacaatagaaagtctactgcttggaacaact 20046822  T
Q  106 actgcaatctcatatttgataaaaatttgtattttccaccaagattatttgagccagatgttaccaagcgttgtgcaaggtggtggaagcaatcg 200  Q
    ||||||  | ||| | |||||||||||||||||||||||||||||| |||||| |||||||||||| ||||| || || ||||||||||||||||    
T  20046823 actgcaggcccatgtctgataaaaatttgtattttccaccaagattgtttgaggcagatgttaccatgcgttatgtaaagtggtggaagcaatcg 20046917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 6 - 199
Target Start/End: Original strand, 26647607 - 26647800
Alignment:
Q  6 tatctaccacatagagatgctatgtaatttagaattgatcaagatgttccaagttatgtgcttaggttaaatgagactaaatcaattgcttagaaaaact 105  Q
    ||||| |||||||||| ||||||| ||||| |||| |||||||||||||| ||| |||||| | | || ||||||||||||   ||||||| ||||||||    
T  26647607 tatctgccacatagagttgctatgcaatttggaatggatcaagatgttccgagtgatgtgcctcgattcaatgagactaaagacattgcttggaaaaact 26647706  T
Q  106 actgcaatctcatatttgataaaaatttgtattttccaccaagattatttgagccagatgttaccaagcgttgtgcaaggtggtggaagcaatc 199  Q
    |||| |  | ||||| |||||  | ||||||||| ||| | ||||| |||||| |||||||||| |  |||| ||||||||||||||| |||||    
T  26647707 actgtagacgcatatctgataggagtttgtatttcccatcgagattttttgaggcagatgttactacccgttatgcaaggtggtggaaacaatc 26647800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 200
Target Start/End: Complemental strand, 20015710 - 20015522
Alignment:
Q  12 ccacatagagatgctatgtaatttagaattgatcaagatgttccaagttatgtgcttaggttaaatgagactaaatcaattgcttagaaaaactactgca 111  Q
    ||||| |||| ||||||| ||||| |||| ||||||||||||||| || |||||| ||| || ||||||||||||   | ||||| |||| | || || |    
T  20015710 ccacacagagttgctatgcaatttggaatggatcaagatgttccaggtgatgtgcctagattcaatgagactaaaatcactgcttggaaatattattgta 20015611  T
Q  112 atctcatatttgataaaaatttgtattttccaccaagattatttgagccagatgttaccaagcgttgtgcaaggtggtggaagcaatcg 200  Q
      || |||| ||||||||| |||||||||||||||||| | |||||| |||||||  |||  |||| ||||| ||||||||||||||||    
T  20015610 ggcttatatctgataaaaacttgtattttccaccaagactctttgaggcagatgtagccacacgttatgcaatgtggtggaagcaatcg 20015522  T

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Target: chr3; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 194
Target Start/End: Original strand, 19990126 - 19990316
Alignment:
Q  4 aatatctaccacatagagatgctatgtaatttagaattgatcaagatgttccaagttatgtgcttaggttaaatgagactaaatcaattgcttagaaaaa 103  Q
    ||||||| |||||||||| |||| || ||||| |||| ||||||||| |||||||||| |||| |||||| ||||||||| ||||  |||||| | ||||    
T  19990126 aatatctcccacatagagttgctttgcaatttggaatggatcaagatattccaagttacgtgcctaggttcaatgagactgaatctgttgcttgggaaaa 19990225  T
Q  104 ctactgcaatctcatatttgataaaaatttgtattttccaccaagattatttgagccagatgttaccaagcgttgtgcaaggtggtggaag 194  Q
    ||||  ||  | ||||| |||| || || ||||||||||| | || || |||||| ||||||||||||  |||| ||||  ||||||||||    
T  19990226 ctacaacaggcccatatctgatgaacatgtgtattttccatcgaggttgtttgaggcagatgttaccactcgttatgcagagtggtggaag 19990316  T

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Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 20007744 - 20007643
Alignment:
Q  49 atgttccaagttatgtgcttaggttaaatgagactaaatcaattgcttagaaaaactactgcaatctcatatttgataaaaatttgtattttccaccaag 148  Q
    ||||||||| | |||||| |||||| |||||||||||||  ||||||| ||| ||||| |  |  || |||| |||||||||||||||||||||||||||    
T  20007744 atgttccaactaatgtgcctaggttcaatgagactaaattcattgcttggaagaactattttaggcttatatctgataaaaatttgtattttccaccaag 20007645  T
Q  149 at 150  Q
    ||    
T  20007644 at 20007643  T

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Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 24839491 - 24839387
Alignment:
Q  4 aatatctaccacatagagatgctatgtaatttagaattgatcaagatgttccaagttatgtgcttaggttaaatgagactaaatcaattgcttagaaaaa 103  Q
    |||||||||||||||||| ||||||| ||||  || ||||||||||||||||  ||||||||  |||  | |||||||||||| | ||||||| ||||||    
T  24839491 aatatctaccacatagagttgctatgcaattcggatttgatcaagatgttcctggttatgtgtctagactcaatgagactaaagccattgcttggaaaaa 24839392  T
Q  104 ctact 108  Q
     ||||    
T  24839391 ttact 24839387  T

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Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 4 - 214
Target Start/End: Original strand, 19849597 - 19849807
Alignment:
Q  4 aatatctaccacatagagatgctatgtaatttagaattgatcaagatgttccaagttatgtgcttaggttaaatgagactaaatcaattgcttagaaaaa 103  Q
    ||||||| ||||||||||   || || ||||  |||| |||||||||||||||||||||||||  ||||||||||| ||||||   ||||||| | ||||    
T  19849597 aatatctcccacatagagtctctttgcaattcggaatggatcaagatgttccaagttatgtgccgaggttaaatgatactaaagacattgcttggcaaaa 19849696  T
Q  104 ctactgcaatctcatatttgataaaaatttgtattttccaccaagattatttgagccagatgttaccaagcgttgtgcaaggtggtggaagcaatcgaca 203  Q
    ||| ||||  | | |   |||||||  ||||||||||||||| ||  | || ||| | |||||||||   |||| ||||| |||||||||||| |||  |    
T  19849697 ctattgcagacccgtccatgataaacgtttgtattttccaccgaggcttttcgaggctgatgttaccgtacgttatgcaaagtggtggaagcactcggta 19849796  T
Q  204 ttaggttgcaa 214  Q
    || ||||||||    
T  19849797 ttgggttgcaa 19849807  T

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Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 19854101 - 19854162
Alignment:
Q  4 aatatctaccacatagagatgctatgtaatttagaattgatcaagatgttccaagttatgtg 65  Q
    |||||||||||||||||| ||||| | ||||| || ||||||||||||||||  ||||||||    
T  19854101 aatatctaccacatagagttgctaggcaatttggatttgatcaagatgttcctggttatgtg 19854162  T

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Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 19858673 - 19858734
Alignment:
Q  4 aatatctaccacatagagatgctatgtaatttagaattgatcaagatgttccaagttatgtg 65  Q
    |||||||||||||||||| ||||||| |||||  | ||||||||||||||||  ||||||||    
T  19858673 aatatctaccacatagagttgctatgcaatttgaatttgatcaagatgttcctggttatgtg 19858734  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 342
Target Start/End: Complemental strand, 20032735 - 20032689
Alignment:
Q  296 tctttagtagtattggcatgactaaaacatattttgctatgctttta 342  Q
    |||||||||  ||| |||||||||| |||||||||||||||||||||    
T  20032735 tctttagtaagattagcatgactaatacatattttgctatgctttta 20032689  T

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Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 4 - 197
Target Start/End: Complemental strand, 22655833 - 22655640
Alignment:
Q  4 aatatctaccacatagagatgctatgtaatttagaattgatcaagatgttccaagttatgtgcttaggttaaatgagactaaatcaattgcttagaaaaa 103  Q
    ||||||| |||| ||||| | ||||| ||||| |||||||||||||||||||  |||||||   |||||| |||||||||||||  ||||||| ||||||    
T  22655833 aatatcttccacgtagagtttctatgcaatttggaattgatcaagatgttccgggttatgtagctaggttcaatgagactaaatacattgcttggaaaaa 22655734  T
Q  104 ctactgcaatctcatatttgataaaaatttgtattttccaccaagattatttgagccagatgttaccaagcgttgtgcaaggtggtggaagcaa 197  Q
    ||||||||  | ||||| ||||||||| |||||||||||||||||||||||||||  |||||||||||  | || |||||||||||||||||||    
T  22655733 ctactgcagacccatatctgataaaaacttgtattttccaccaagattatttgagatagatgttaccacacattatgcaaggtggtggaagcaa 22655640  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 11544671 - 11544778
Alignment:
Q  4 aatatctaccacatagagatgctatgtaatttagaattgatcaagatgttccaagttatgtgcttaggttaaatgagactaaatcaattgcttagaaaaa 103  Q
    ||||||| |||||||||| ||||||| ||||| |||| |||||||||||||||  || ||||| ||| || ||||||| | || | ||||||| ||||||    
T  11544671 aatatcttccacatagagttgctatgcaatttggaatggatcaagatgttccagcttgtgtgcctagattcaatgagaatgaaaccattgcttggaaaaa 11544770  T
Q  104 ctactgca 111  Q
     |||||||    
T  11544771 ttactgca 11544778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 22689190 - 22689130
Alignment:
Q  4 aatatctaccacatagagatgctatgtaatttagaattgatcaagatgttccaagttatgt 64  Q
    |||||||||||||||||| ||||| | | ||| |||| ||||||||||||||  |||||||    
T  22689190 aatatctaccacatagagttgctaggcagtttggaatggatcaagatgttcctggttatgt 22689130  T

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Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 6 - 198
Target Start/End: Original strand, 1717823 - 1718015
Alignment:
Q  6 tatctaccacatagagatgctatgtaatttagaattgatcaagatgttccaagttatgtgcttaggttaaatgagactaaatcaattgcttagaaaaact 105  Q
    ||||| |||||||||| ||||||| ||||| |||| |||||||||||||||||| |||||| ||| || |||||| ||||||| ||||||| |||| |||    
T  1717823 tatctgccacatagagttgctatgcaatttggaatggatcaagatgttccaagtgatgtgcctagattcaatgaggctaaatccattgcttggaaacact 1717922  T
Q  106 actgcaatctcatatttgataaaaatttgtattttccaccaagattatttgagccagatgttaccaagcgttgtgcaaggtggtggaagcaat 198  Q
    ||||||  | ||||| |||||||||  ||||||||||| | ||||| ||||||  | ||||||||   |||| ||||||||||||||||||||    
T  1717923 actgcaggcccatatctgataaaaaaatgtattttccatcgagattttttgagggaaatgttacctcacgttatgcaaggtggtggaagcaat 1718015  T

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Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 39191493 - 39191386
Alignment:
Q  4 aatatctaccacatagagatgctatgtaatttagaattgatcaagatgttccaagttatgtgcttaggttaaatgagactaaatcaattgcttagaaaaa 103  Q
    ||||||| |||||||||| ||||||| ||||| |||| |||||||||||||||  || ||||| ||| || ||||||||| || | ||||||| ||||||    
T  39191493 aatatcttccacatagagttgctatgcaatttggaatggatcaagatgttccagattgtgtgcctagattcaatgagactgaaaccattgcttggaaaaa 39191394  T
Q  104 ctactgca 111  Q
     |||||||    
T  39191393 ttactgca 39191386  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 6397180 - 6397102
Alignment:
Q  122 tgataaaaatttgtattttccaccaagattatttgagccagatgttaccaagcgttgtgcaaggtggtggaagcaatcg 200  Q
    |||||||||||||||||||||||||||| | |||||| | |||||||| | || || ||||| ||||| ||||||||||    
T  6397180 tgataaaaatttgtattttccaccaagactgtttgaggctgatgttactatgcattatgcaaagtggtagaagcaatcg 6397102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 12579485 - 12579410
Alignment:
Q  124 ataaaaatttgtattttccaccaagattatttgagccagatgttaccaagcgttgtgcaaggtggtggaagcaatc 199  Q
    ||||||||||||||||| ||||| || | |||||| ||||| |||||| ||||| || || |||||||||||||||    
T  12579485 ataaaaatttgtattttgcaccatgactgtttgaggcagatattaccatgcgttatgtaaagtggtggaagcaatc 12579410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 124 - 201
Target Start/End: Complemental strand, 12495388 - 12495311
Alignment:
Q  124 ataaaaatttgtattttccaccaagattatttgagccagatgttaccaagcgttgtgcaaggtggtggaagcaatcga 201  Q
    ||||||||||||||||| ||||| || | |||||| ||||| |||||| ||||| || || || ||||||||||||||    
T  12495388 ataaaaatttgtattttgcaccatgactgtttgaggcagatattaccatgcgttatgtaaagttgtggaagcaatcga 12495311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 124 - 201
Target Start/End: Complemental strand, 12519192 - 12519115
Alignment:
Q  124 ataaaaatttgtattttccaccaagattatttgagccagatgttaccaagcgttgtgcaaggtggtggaagcaatcga 201  Q
    ||||||||||||||||| ||||| || | |||||| ||||  |||||| ||||| || || |||||||||||||||||    
T  12519192 ataaaaatttgtattttgcaccatgactgtttgaggcagaaattaccatgcgttatgtaaagtggtggaagcaatcga 12519115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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