View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19673_low_5 (Length: 466)

Name: NF19673_low_5
Description: NF19673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19673_low_5
NF19673_low_5
[»] chr1 (4 HSPs)
chr1 (16-449)||(22816830-22817264)
chr1 (53-92)||(21191228-21191267)
chr1 (53-90)||(6605399-6605436)
chr1 (16-44)||(22817275-22817303)
[»] chr7 (1 HSPs)
chr7 (53-92)||(24687302-24687341)
[»] chr5 (1 HSPs)
chr5 (53-92)||(24855698-24855737)
[»] chr4 (2 HSPs)
chr4 (53-92)||(45659308-45659347)
chr4 (53-92)||(47985468-47985507)
[»] chr2 (2 HSPs)
chr2 (53-92)||(15113127-15113166)
chr2 (53-92)||(16739190-16739229)


Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 449
Target Start/End: Complemental strand, 22817264 - 22816830
Alignment:
Q  16 atagaacaaatatacataacatagccttagnnnnnnn--tagaacaaatatacataacataaatagaagcaacataagannnnnnngttgtgctaagtga 113  Q
    |||||||||||||||||||||||||||||          |||||||||||||||||| ||| |||||||||||||||||       ||||||||||||||    
T  22817264 atagaacaaatatacataacatagccttaaaaaaaaaaatagaacaaatatacataagatacatagaagcaacataagatttttt-gttgtgctaagtga 22817166  T
Q  114 ttttctgtccacaaatattttatgaaaccgctgagccattctttcgagcgctaagcaatttcaaaacataaaatcagagtgaaattgttttgaggcagct 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22817165 ttttctgtccacaaatattttatgaaaccgctgagccattctttcgagcgctaagcaatttcaaaacataaaatcagagtgaaattgttttgaggcagct 22817066  T
Q  214 tcacaaattttggaagggctaagccatttttacagaaacatttaagtgtaattctcattcatttctcaataaatcgctcaatgtgtgttataactggttc 313  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||| ||||    
T  22817065 tcacaaattttggaagggataagccatttttacataaacatttaagtgtaatttacattcatttctcaaaaaatcgctcaatgtgtgttataactagttc 22816966  T
Q  314 nnnnnnnnttgctaatacataaacactcagatgacttaaaatgaatgacaaaggcgagaaaattgggttgcctccnnnnnnncgcttgacaacacttgat 413  Q
            |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  22816965 aaaaaacattgccaatacataaacactcagatgacttaaaatgaatgacaaaggcgagaaaattgggttgcctccaaaaaaacgcttgacaacacttgat 22816866  T
Q  414 ttattagggaagcaataatgacacagagtacgtcat 449  Q
    ||||||||||||||||||||| ||||||||||||||    
T  22816865 ttattagggaagcaataatgagacagagtacgtcat 22816830  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 92
Target Start/End: Original strand, 21191228 - 21191267
Alignment:
Q  53 tagaacaaatatacataacataaatagaagcaacataaga 92  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  21191228 tagaacaaaggtacataacataaatagaagcaacataaga 21191267  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 6605436 - 6605399
Alignment:
Q  53 tagaacaaatatacataacataaatagaagcaacataa 90  Q
    |||||||||  |||||||||||||||||||||||||||    
T  6605436 tagaacaaaggtacataacataaatagaagcaacataa 6605399  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 22817303 - 22817275
Alignment:
Q  16 atagaacaaatatacataacatagcctta 44  Q
    |||||||||||||||||||||||||||||    
T  22817303 atagaacaaatatacataacatagcctta 22817275  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 24687341 - 24687302
Alignment:
Q  53 tagaacaaatatacataacataaatagaagcaacataaga 92  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  24687341 tagaacaaaggtacataacataaatagaagcaacataaga 24687302  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 24855737 - 24855698
Alignment:
Q  53 tagaacaaatatacataacataaatagaagcaacataaga 92  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  24855737 tagaacaaagatacataacataaattgaagcaacataaga 24855698  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 45659347 - 45659308
Alignment:
Q  53 tagaacaaatatacataacataaatagaagcaacataaga 92  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  45659347 tagaacaaaggtacataacataaatagaagcaacataaga 45659308  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 47985507 - 47985468
Alignment:
Q  53 tagaacaaatatacataacataaatagaagcaacataaga 92  Q
    |||||||||| |||||||||||||||||| ||||||||||    
T  47985507 tagaacaaatgtacataacataaatagaatcaacataaga 47985468  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 15113166 - 15113127
Alignment:
Q  53 tagaacaaatatacataacataaatagaagcaacataaga 92  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  15113166 tagaacaaaggtacataacataaatagaagcaacataaga 15113127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 16739229 - 16739190
Alignment:
Q  53 tagaacaaatatacataacataaatagaagcaacataaga 92  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  16739229 tagaacaaaggtacataacataaatagaagcaacataaga 16739190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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