View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19673_low_6 (Length: 460)
Name: NF19673_low_6
Description: NF19673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19673_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 16 - 446
Target Start/End: Complemental strand, 5301075 - 5300645
Alignment:
| Q |
16 |
agaaacctgggaaaaaggagcgaaaaaggaggattccgagaaacaatcctttttgttatgtagctagcactgaagatcatgtgggaacttctcatgtaat |
115 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5301075 |
agaaacctgggaaaaaggagcaaaaaaggaagattccgagaaacaatcctttttgttatgtagctagcactgaagatcatgtgggaacttctcatgtaat |
5300976 |
T |
|
| Q |
116 |
acacaaggaaaacgacccgagtgtgtctcgtctatcattaaacttggaacaattggatctgctcgactcatcaatgacattttgggaggagattacaaat |
215 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5300975 |
acacaaagaaaacgacccgggtgtgtctcgtctatcattaaacttggaacaattggatctgctcgactcatcaatgacattttgggaggagattacaaat |
5300876 |
T |
|
| Q |
216 |
gatgttggtgccgaagttcagcccaagtcactagaactcgacatgaactccatgccagtggtagttgttcctgatccagttgcaactgagacagatgtag |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5300875 |
gatgttggtgccgaagttcagcccaagtcactagaagtcgacatgaactccatgccagtggtagttgttcctgatccagttgcaactgagacagatgtag |
5300776 |
T |
|
| Q |
316 |
ttgttattcctaatcacgttgcaactgagctggatgtaatcgttgttcctaatccggttgcaactgagccagcggtaatcaatgcttccgatcttgttgc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5300775 |
ttgttattcctaatcacgttgcaactgagctggatgtaatcgttgttcctaatccggttgcaactgagccagcggtaatcaatgcttccgatcttgttgc |
5300676 |
T |
|
| Q |
416 |
agttgacccaactgttgcagttgtccctgat |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
5300675 |
agttgacccaactgttgcagttgtccctgat |
5300645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 280 - 345
Target Start/End: Original strand, 52000304 - 52000369
Alignment:
| Q |
280 |
ttgttcctgatccagttgcaactgagacagatgtagttgttattcctaatcacgttgcaactgagc |
345 |
Q |
| |
|
||||||||||||| ||||||||| || ||| |||||||| |||||||||| ||||||||||||| |
|
|
| T |
52000304 |
ttgttcctgatcctgttgcaactaagccagtgctagttgttgttcctaatcatgttgcaactgagc |
52000369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 346
Target Start/End: Original strand, 15621297 - 15621415
Alignment:
| Q |
228 |
gaagttcagcccaagtcactagaactcgacatgaactccatgccagtggtagttgttcctgatccagttgcaactgagacagatgtagttgttattccta |
327 |
Q |
| |
|
||||||| ||||||||||| ||| |||||||||| ||||| |||||||||||| |||||||| |||| ||| | | |||||| ||||||||| |
|
|
| T |
15621297 |
gaagttcgccccaagtcactggaaagtgacatgaactatgtgccattggtagttgttcttgatccagatgcatctgggccgaatgtagctgttattcccg |
15621396 |
T |
|
| Q |
328 |
atcacgttgcaactgagct |
346 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
15621397 |
atctagttgcaactgagct |
15621415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 15621096 - 15621168
Alignment:
| Q |
37 |
gaaaaaggaggattccgagaaacaatcctttttgttatgtagctagcactgaagatcatgtgggaacttctca |
109 |
Q |
| |
|
||||||||||||||| ||||| |||| ||||| | ||||||| | || |||||||||||| |||||||||| |
|
|
| T |
15621096 |
gaaaaaggaggattcaaagaaagaatcatttttataatgtagcaatcattgaagatcatgtttgaacttctca |
15621168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University