View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19673_low_7 (Length: 422)
Name: NF19673_low_7
Description: NF19673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19673_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 116 - 413
Target Start/End: Complemental strand, 714402 - 714098
Alignment:
| Q |
116 |
tgaacaaagaatatagcatgaattctataatacaactctctttgttctaattaggaagtattgttttattgtactaaggtaatagacatgtggtgtcaca |
215 |
Q |
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| T |
714402 |
tgaacaaagaatatagcatgaattctataatacaactctctttgttctaattaagaagtattgttttattgtactaagttaatagacatgtggagtcaca |
714303 |
T |
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| Q |
216 |
aactggaaacctcacttccctatccctgaagcaatagttgttcattttgtgaaaattgactggaagacatttaagactgcatcaaattattctagtcaca |
315 |
Q |
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| T |
714302 |
aactggaaacctcacttccctttcgctgaagcaatagttgtttattttgtgaaaattgactggaagacatttaagactgcatcaaattattctactcaca |
714203 |
T |
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| Q |
316 |
att----------aaattgattgataccttttccattattattacatataagattacaaacattctctttatttgccaatcacaatgctagagtgtgtgt |
405 |
Q |
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| T |
714202 |
attcatgtttaaaaaattgattgataccttttcc---attattacatataagattacaaacattctctttatttgccaatcacaatgctagagtgtgtgt |
714106 |
T |
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| Q |
406 |
agtattat |
413 |
Q |
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| T |
714105 |
agtattat |
714098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 820831 - 820730
Alignment:
| Q |
17 |
agatagttgaagatcttctagaactggacatgcgtctagaagcatcatcagttgacattgttggtcaaagataaagtctttcaaatgtagtgttttgagt |
116 |
Q |
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| T |
820831 |
agatagttgaagatcttctagaactggacatgcgtctagaagcatcatcagttgacattgttggtcaaagataatgtctttcaaatgtagtgttttgagt |
820732 |
T |
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| Q |
117 |
ga |
118 |
Q |
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|| |
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| T |
820731 |
ga |
820730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 810548 - 810477
Alignment:
| Q |
116 |
tgaacaaagaatatagcatgaattctataatacaactctctttgttctaattaggaagtattgttttattgt |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
810548 |
tgaacaaagaatatagcatgaattctataatacaactctctttgttctaattaggaagtattgttttattgt |
810477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 975127 - 975226
Alignment:
| Q |
19 |
atagttgaagatcttctagaactggacatgcgtctagaagcatcatcagttgacattgttggtcaaagataaagtctttcaaatgtagtgttttgagtga |
118 |
Q |
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| T |
975127 |
atagttgaagatcttcaagaactggacatccatctagaagcatcataaaatcacgttgctgatcaaagtaaatctctttcaaatgtagggtttttagtga |
975226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 1459698 - 1459742
Alignment:
| Q |
14 |
atcagatagttgaagatcttctagaactggacatgcgtctagaag |
58 |
Q |
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| T |
1459698 |
atcatatagttgaagatcttcaagaactggacatccctctagaag |
1459742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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