View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19673_low_9 (Length: 402)
Name: NF19673_low_9
Description: NF19673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19673_low_9 |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 244 - 385
Target Start/End: Complemental strand, 6792567 - 6792426
Alignment:
| Q |
244 |
tagaaattggcattaatctcaaaacaattttttacaaatgttatgtgatggagtagttaacaaaagaaaaacagaattaaatttatttgaaggaatttgt |
343 |
Q |
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| T |
6792567 |
tagaaattagcattaatctcaaaacagatttttacaaatgttatgtgatggagtagttaacaaaagaaaaacagaattaaaattatttgaaggaatttgt |
6792468 |
T |
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| Q |
344 |
gtactaccaaggaattgtacttttagaagacaaatgaggttt |
385 |
Q |
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| T |
6792467 |
gtacaagcaaggaattgtacttatagaagacaaatgaggttt |
6792426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 6849352 - 6849278
Alignment:
| Q |
10 |
aaatgaacaccattgtgataaaatacagttcctatcgttactacaccttgtttaagaatatttggtaaaatgtaa |
84 |
Q |
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| T |
6849352 |
aaatgaacaccaatgtgataaaatacagatgctattattactacaccttttttaagaatatttcgtaaaaagtaa |
6849278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 254 - 347
Target Start/End: Complemental strand, 6786482 - 6786388
Alignment:
| Q |
254 |
cattaatctcaaaacaattttttacaaatgttatg-tgatggagtagttaacaaaagaaaaacagaattaaatttatttgaaggaatttgtgtac |
347 |
Q |
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| T |
6786482 |
cattaattttaaaacaaaattttacaaatattatgatggaggagtagttaacaaaagaaaaacagatataaaattatttgaaagaacttgtgtac |
6786388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 6411353 - 6411288
Alignment:
| Q |
14 |
gaacaccattgtgataaaatacagttcctatcgttactacaccttgtttaagaatatttggtaaaa |
79 |
Q |
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| T |
6411353 |
gaacacaaatgtaataaaatacagctgctattattactacatcttgtttaagaatatttggtaaaa |
6411288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 6938353 - 6938387
Alignment:
| Q |
50 |
ctacaccttgtttaagaatatttggtaaaatgtaa |
84 |
Q |
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| T |
6938353 |
ctacaccttgtttaagaatatttggtaaaaagtaa |
6938387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 6558371 - 6558322
Alignment:
| Q |
197 |
gtcttatagttaagcttgtcattgatacatagaagaaatgttgcacatag |
246 |
Q |
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| T |
6558371 |
gtcttatagttaagctggtccttgatacaatgaagaactgttgcacatag |
6558322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 12460 - 12386
Alignment:
| Q |
10 |
aaatgaacaccattgtgataaaatacagttcctatcgttactacaccttgtttaagaatatttggtaaaatgtaa |
84 |
Q |
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|||||||||||| ||||||||||||||| | |||| |||||||||||| ||||||||||||| |||||| |||| |
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| T |
12460 |
aaatgaacaccaatgtgataaaatacagatgctattattactacaccttttttaagaatatttcgtaaaaagtaa |
12386 |
T |
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