View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19674_high_1 (Length: 949)

Name: NF19674_high_1
Description: NF19674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19674_high_1
NF19674_high_1
[»] chr5 (26 HSPs)
chr5 (404-929)||(10212821-10213370)
chr5 (428-649)||(9677191-9677412)
chr5 (441-640)||(12105294-12105493)
chr5 (642-926)||(10105150-10105454)
chr5 (108-367)||(9677614-9677867)
chr5 (437-597)||(9683918-9684077)
chr5 (404-565)||(9675660-9675829)
chr5 (122-404)||(10102242-10102525)
chr5 (1-159)||(12107191-12107355)
chr5 (596-742)||(9675522-9675660)
chr5 (496-598)||(10211009-10211111)
chr5 (115-189)||(9660676-9660750)
chr5 (305-404)||(10213629-10213734)
chr5 (1-64)||(9660773-9660836)
chr5 (305-362)||(9676076-9676133)
chr5 (823-926)||(9675292-9675395)
chr5 (309-402)||(12105727-12105826)
chr5 (8-63)||(9676342-9676396)
chr5 (217-305)||(9676163-9676249)
chr5 (766-823)||(9683324-9683380)
chr5 (763-819)||(9675430-9675486)
chr5 (824-860)||(10102593-10102629)
chr5 (147-183)||(12106377-12106413)
chr5 (654-740)||(9683423-9683509)
chr5 (26-64)||(10102179-10102217)
chr5 (658-740)||(10210638-10210720)


Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-141; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 404 - 929
Target Start/End: Complemental strand, 10213370 - 10212821
Alignment:
Q  404 tatttgccatgatttttaaccaagtgattatggttaatatttttcaaaagatagttatctttgttctttccggtttccgagtgcac--------cggggg 495  Q
    ||||||||| ||||||||| ||||||||  || ||||||||||| |||||||| |||||||||| |||| ||| || |||||||||        ||||||    
T  10213370 tatttgccaggatttttaatcaagtgatc-tgattaatatttttaaaaagatacttatctttgtccttttcgggttgcgagtgcactgggtgaccggggg 10213272  T
Q  496 ctttactttatcctatttatggtgaaggagaactaacacaagccttttgttgtcgtgcttctgtcaaaggttgcatttatttaagttttaaagg-attta 594  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||    
T  10213271 ctttgctttatcctatctatggtgaaggagaactaacacaagccttttgtcgccgtgcttctgtcaaaggttgcatttatttaagttttaaagggattta 10213172  T
Q  595 tgaggccgtttcttaaaatttctaaataccttaatttcattctcttgaaatattgcaaattgttgttttgtcgaacttatatgcttatttacgtcttaaa 694  Q
     | ||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||  |||||||||| |||||||| |||||||    
T  10213171 ggcggccgtttcttaaaatttctaaatatctaaatttcattctctttaaatattgcaaattgttgttttgttaaacttatatgtttatttacatcttaaa 10213072  T
Q  695 cttttgcgaatccggttcgctgaatgctggttatttctctgcttatgg------------------tctttgatatgtttatactaatataatatttttg 776  Q
     ||||  ||||| ||||||  ||||||  |||||||||||||||||||                  |||| |||||||||||||||||||||||||||||    
T  10213071 attttctgaatcaggttcgtcgaatgcctgttatttctctgcttatggataaggtacataaatcattcttagatatgtttatactaatataatatttttg 10212972  T
Q  777 agaagaaatgaggttgaaaatcccccaagtgcaaagcaatttcatc--tgtcatatgtaaacgaatgttgcaggtgactgagttgtataaaggtgtcaga 874  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||  |||||| | ||||||||||||||||||||||||||||  ||||||||| |||    
T  10212971 agaagagatgaggttgaatatcccccaagtgcaaagcaatttcatctttgtcatttttaaacgaatgttgcaggtgactgagttgcgtaaaggtgttaga 10212872  T
Q  875 tcagcttatcctagatccatcatttgtaataccatcaacacaatctttgtctaaa 929  Q
    |||||||||    |||||||| |||||||| ||||||||||||||||||| ||||    
T  10212871 tcagcttat----gatccatcctttgtaattccatcaacacaatctttgtttaaa 10212821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 428 - 649
Target Start/End: Complemental strand, 9677412 - 9677191
Alignment:
Q  428 tgattatggttaatatttttcaaaagatagttatctttgttctttccggtttccgagtgcaccgggggctttactttatcctatttatggtgaaggagaa 527  Q
    |||||||||||||| |||||||||||||| |||||||||| ||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||    
T  9677412 tgattatggttaatgtttttcaaaagatacttatctttgtcctttccggtttccgaatgcaccaggggctttgctttatcctatttatggtgaaggagaa 9677313  T
Q  528 ctaacacaagccttttgttgtcgtgcttctgtcaaaggttgcatttatttaagttttaaaggatttatgaggccgtttcttaaaatttctaaatacctta 627  Q
    | ||||||||| || ||  ||| | || |||||||||||  ||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  9677312 ccaacacaagctttctgccgtcatactgctgtcaaaggtcacatttatgtaagttttaaaggatttatgaggctgtttcttaaaatttataaatacctta 9677213  T
Q  628 atttcattctcttgaaatattg 649  Q
    |||||| |||||| ||||||||    
T  9677212 atttcactctctttaaatattg 9677191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 441 - 640
Target Start/End: Complemental strand, 12105493 - 12105294
Alignment:
Q  441 tatttttcaaaagatagttatctttgttctttccggtttccgagtgcaccgggggctttactttatcctatttatggtgaaggagaactaacacaagcct 540  Q
    |||||||||||||||| ||| |||||| ||||||||||||||| |||||| |||||||| |||||||||| |||||||||||||||||||| | ||||||    
T  12105493 tatttttcaaaagataattaactttgtcctttccggtttccgaatgcaccaggggctttgctttatcctacttatggtgaaggagaactaaaagaagcct 12105394  T
Q  541 tttgttgtcgtgcttctgtcaaaggttgcatttatttaagttttaaaggatttatgaggccgtttcttaaaatttctaaataccttaatttcattctctt 640  Q
    ||||| || || || |||||| |||| |||||||| || ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  12105393 tttgtcgttgtactgctgtcataggtcgcatttatgtatgttttaaaggatttatgaggctgtttcttaaaatttctaaatatcttaatttcattctctt 12105294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 642 - 926
Target Start/End: Original strand, 10105150 - 10105454
Alignment:
Q  642 aaatattgcaaattgttgttttgtcgaacttatatgcttatttacgtcttaaacttttgcgaatccggttcgctgaatgctggttatttctctgcttatg 741  Q
    |||||||||||||||||||||||| |||| | ||||||||| ||| ||||||| ||||| ||||| |||||||  |||||  ||||||||||||||||||    
T  10105150 aaatattgcaaattgttgttttgttgaacatgtatgcttatgtacatcttaaaattttgtgaatcaggttcgccaaatgcctgttatttctctgcttatg 10105249  T
Q  742 g-------------------tctttgatatgtttatactaatataatatttttgagaagaaatgaggttgaaaatcccccaagtgcaaagcaatttcatc 822  Q
    |                   ||||  ||||||||| |||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||    
T  10105250 gatgagtgtacagaaataattcttacatatgtttagactaatataatatttttgagaagagatgaggttgaatatcccgcaagtgcaaagcaatttcatc 10105349  T
Q  823 --tgtcatatgtaaacgaatgttgcaggtgactgagttgtataaaggtgtcagatcagcttatcctagatccatcatttgtaataccatcaacacaatct 920  Q
      |||||| | |||| |||||||||||||||||||||||| || ||||||||||||||||||| || ||||| || || |||||||||||||||||||||    
T  10105350 tttgtcatttttaaatgaatgttgcaggtgactgagttgtgtacaggtgtcagatcagcttat-ctggatccttccttcgtaataccatcaacacaatct 10105448  T
Q  921 ttgtct 926  Q
    ||||||    
T  10105449 ttgtct 10105454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 108 - 367
Target Start/End: Complemental strand, 9677867 - 9677614
Alignment:
Q  108 tgtcaacaattcttctcttgcaagcaaggtttagagctgacttttagaacttcacaccctgtgtccattctcttttct----taaaacaaaggttgggtg 203  Q
    ||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||    ||||||||||| |||||     
T  9677867 tgtcaacaattctgctcttgcaaacaaggtttggagctgacttttagaacttcacaccatgtgtccattctcttttcttaaataaaacaaaggctgggtc 9677768  T
Q  204 taaggccatcatgacagatttgtttgatggtgtgagaatttgacaacaaaatgcagatctgcatttatgagtcatttcaaaccagcattcatactctgtg 303  Q
    ||| |||||||| ||| |||||||||||||||| | | |||| ||| |||||||| || |||||||| ||| ||||||||| ||||| ||| |           
T  9677767 taatgccatcataacaaatttgtttgatggtgt-aaactttggcaataaaatgcaaatatgcatttacgagccatttcaaaacagcaatcaca------- 9677676  T
Q  304 tagtgcaacaatatgaattatacaataaagtatactatgttctttaaaaaagttaaattgatca 367  Q
     |||||||||||||||||| |||||| |||| | ||||| | ||||||||||||||||||||||    
T  9677675 -agtgcaacaatatgaattgtacaatgaagtgttctatgct-tttaaaaaagttaaattgatca 9677614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 437 - 597
Target Start/End: Complemental strand, 9684077 - 9683918
Alignment:
Q  437 ttaatatttttcaaaagatagttatctttgttctttccggtttccgagtgcaccgggggctttactttatcctatttatggtgaaggagaactaacacaa 536  Q
    ||||||||||||||  |||| ||||||||||| |||| ||| ||| | ||| ||||||||||| ||||||||||||||||||||||| |||||| |||||    
T  9684077 ttaatatttttcaactgatacttatctttgttttttcaggtatcccaatgccccgggggctttgctttatcctatttatggtgaaggggaactaccacaa 9683978  T
Q  537 gccttttgttgtcgtgcttctgtcaaaggttgcatttatttaagttttaaaggatttatga 597  Q
    || |||||| |||||||| |||||||||||||||||||| |||| ||||||||||||||||    
T  9683977 gctttttgtcgtcgtgctgctgtcaaaggttgcatttatgtaag-tttaaaggatttatga 9683918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 404 - 565
Target Start/End: Complemental strand, 9675829 - 9675660
Alignment:
Q  404 tatttgccatgatttttaaccaagtgattatggttaatatttttcaaaagatagttatctttgttctttccggtttccgagtgcaccgggggctttactt 503  Q
    |||||||| |||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||| |||||||||| ||||  ||    
T  9675829 tatttgccctgatttgtaatcaagtgattatggttaatatttttcaaaagatacttatctttgttctttcagatttccgaatgcaccggggactttgatt 9675730  T
Q  504 tatcctatttatggtgaaggagaa--------ctaacacaagccttttgttgtcgtgcttctgtcaaagg 565  Q
    ||||||| ||||||||||||||||        |||||||||||||||||| |||||||| ||||| ||||    
T  9675729 tatcctacttatggtgaaggagaactaatagtctaacacaagccttttgtcgtcgtgctgctgtctaagg 9675660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 122 - 404
Target Start/End: Original strand, 10102242 - 10102525
Alignment:
Q  122 ctcttgcaagcaaggtttagagctgacttttagaacttcacaccctgtgtccattctcttttcttaaaacaaaggttgggtgtaaggccatcatgacaga 221  Q
    |||||||||| |||| || ||| |||||||||||||||||  || |||||||||||||||||| ||||||||||||||||||||| ||   ||| |||||    
T  10102242 ctcttgcaaggaaggcttggagatgacttttagaacttcattccatgtgtccattctcttttcctaaaacaaaggttgggtgtaatgc---cataacaga 10102338  T
Q  222 tttgtttgatggtg-------tgagaatttgacaacaaaatgcagatctgcatttatgagtcatttcaaaccagcattcatactctgtgtagtgcaacaa 314  Q
    |||| |||||||||       |||| ||||| ||||||||| || ||||| |||||||||||||||||||         ||| | ||   ||||||||||    
T  10102339 tttgattgatggtgtgaggactgaggatttggcaacaaaatacaaatctgtatttatgagtcatttcaaa---------ata-tttgccaagtgcaacaa 10102428  T
Q  315 tatgaattatacaataaagtatactatgttcttt-aaaaaagttaaattgatca---tcttgtgcaat---gagtactatctcatttcatatttcat 404  Q
    ||||||||||||||| || | ||||||||||||| |||||||||||| ||||||   |||||||||||   |||||||||||| |||||||||||||    
T  10102429 tatgaattatacaatgaattgtactatgttctttaaaaaaagttaaactgatcaccttcttgtgcaatgaagagtactatctcgtttcatatttcat 10102525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 12107355 - 12107191
Alignment:
Q  1 tgacttagataacattctgtggtgtaacacaaatagtaaaaagcattcagagttgctacaatga-------aagtaaaaacaaccacacattattaagca 93  Q
    |||||| |||| ||||||| |||| ||||||| |||||||||||||||||||||||||||||||       ||||| |||||||||| ||||||||| ||    
T  12107355 tgactttgatatcattctgaggtgcaacacaa-tagtaaaaagcattcagagttgctacaatgactttgataagtagaaacaaccacgcattattaaaca 12107257  T
Q  94 aacaattgcactagtgtcaacaattcttctcttgcaagcaaggtttagagctgacttttagaactt 159  Q
    ||   ||| |||| ||||||||||||| ||||||||||||||||||  |||| |||||||||||||    
T  12107256 aaatgttgtactattgtcaacaattctgctcttgcaagcaaggtttgaagcttacttttagaactt 12107191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 596 - 742
Target Start/End: Complemental strand, 9675660 - 9675522
Alignment:
Q  596 gaggccgtttcttaaaatttctaaataccttaatttcattctcttgaaatattgcaaattgttgttttgtcgaacttatatgcttatttacgtcttaaac 695  Q
    |||||| |||||| ||||||| |||||||||||||||||||||||  ||||||||| |||||||        ||||||||||||||||||| ||||||||    
T  9675660 gaggccttttctttaaatttccaaataccttaatttcattctcttttaatattgcatattgttg--------aacttatatgcttatttacatcttaaac 9675569  T
Q  696 ttttgcgaatccggttcgctgaatgctggttatttctctgcttatgg 742  Q
    ||||| ||||| ||||||  |||||| |||||| |||||||||||||    
T  9675568 ttttgtgaatcaggttcgacgaatgccggttatatctctgcttatgg 9675522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 496 - 598
Target Start/End: Complemental strand, 10211111 - 10211009
Alignment:
Q  496 ctttactttatcctatttatggtgaaggagaactaacacaagccttttgttgtcgtgcttctgtcaaaggttgcatttatttaagttttaaaggatttat 595  Q
    ||||||||| ||||||||||||||||||| |||||  |||||| |||||| |||||||| || ||||||||||||||||| ||||||||| |||||||||    
T  10211111 ctttactttgtcctatttatggtgaaggaaaactacgacaagctttttgtcgtcgtgctgctatcaaaggttgcatttatgtaagttttataggatttat 10211012  T
Q  596 gag 598  Q
    |||    
T  10211011 gag 10211009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 115 - 189
Target Start/End: Complemental strand, 9660750 - 9660676
Alignment:
Q  115 aattcttctcttgcaagcaaggtttagagctgacttttagaacttcacaccctgtgtccattctcttttcttaaa 189  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  9660750 aattctgctcttgcaagcaaggtttggagctgacttttagaacttcacaccatgtgtccgttctcttttcttaaa 9660676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 305 - 404
Target Start/End: Complemental strand, 10213734 - 10213629
Alignment:
Q  305 agtgcaacaatatgaattatacaataaagtatactatgttctttaaaaaagttaaattgatca---tcttgtgcaat---gagtactatctcatttcata 398  Q
    |||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||   |||| ||||||   |||||||||||| ||| |||    
T  10213734 agtgcaacaatatgaattatacgatgaagtgtactatgttctttaaaaaagttaaattgatcaccttcttatgcaatgaagagtactatctcgttttata 10213635  T
Q  399 tttcat 404  Q
    ||||||    
T  10213634 tttcat 10213629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 9660836 - 9660773
Alignment:
Q  1 tgacttagataacattctgtggtgtaacacaaatagtaaaaagcattcagagttgctacaatga 64  Q
    |||||| |||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||    
T  9660836 tgactttgataacattctgaggtgcaacacaaatagtaaaaagcattcagagtttctacaatga 9660773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 305 - 362
Target Start/End: Complemental strand, 9676133 - 9676076
Alignment:
Q  305 agtgcaacaatatgaattatacaataaagtatactatgttctttaaaaaagttaaatt 362  Q
    ||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||    
T  9676133 agtgcaacaatataaattatacaatgaagtgtactatgttctttaaaaaagttaaatt 9676076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 823 - 926
Target Start/End: Complemental strand, 9675395 - 9675292
Alignment:
Q  823 tgtcatatgtaaacgaatgttgcaggtgactgagttgtataaaggtgtcagatcagcttatcctagatccatcatttgtaataccatcaacacaatcttt 922  Q
    |||||| | ||||| ||||| |||| | ||||||| |||| ||||||| ||||||| ||||||| |||||||| |||||||| ||||||||||| | |||    
T  9675395 tgtcatttttaaactaatgtcgcagatcactgagtcgtatgaaggtgttagatcagtttatcctggatccatcctttgtaattccatcaacacagtgttt 9675296  T
Q  923 gtct 926  Q
    ||||    
T  9675295 gtct 9675292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 309 - 402
Target Start/End: Complemental strand, 12105826 - 12105727
Alignment:
Q  309 caacaatatgaattatacaataaagtatactatgttctttaaaaaagttaaattgatca---tcttgtgcaat---gagtactatctcatttcatatttc 402  Q
    |||||||||||||| |||||| |||| | ||||| ||||| ||||||||||||||||||   |||||||||||   ||||||||||||||||||| ||||    
T  12105826 caacaatatgaattgtacaatgaagtgttctatgctctttgaaaaagttaaattgatcaccttcttgtgcaatgaagagtactatctcatttcatctttc 12105727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 9676396 - 9676342
Alignment:
Q  8 gataacattctgtggtgtaacacaaatagtaaaaagcattcagagttgctacaatg 63  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||    
T  9676396 gataacattctgaggtgcaacacaaatagtaaaaagcattcagagtt-ctacaatg 9676342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 305
Target Start/End: Complemental strand, 9676249 - 9676163
Alignment:
Q  217 acagatttgtttgatggtgtgagaatttgacaacaaaatgcagatctgcatttatgagtcatttcaaaccagcattcatactctgtgta 305  Q
    ||||||||||||||| | ||||| |||||  |||||||| || |||||||||  || ||||||||||| ||||||||||| ||| ||||    
T  9676249 acagatttgtttgatagcgtgaggatttggaaacaaaatacaaatctgcatt--tgtgtcatttcaaagcagcattcataatctctgta 9676163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 766 - 823
Target Start/End: Complemental strand, 9683380 - 9683324
Alignment:
Q  766 taatatttttgagaagaaatgaggttgaaaatcccccaagtgcaaagcaatttcatct 823  Q
    |||||||||||| |||| | ||||||||| |||||| |||||||||||||||||||||    
T  9683380 taatatttttgataagagacgaggttgaatatcccc-aagtgcaaagcaatttcatct 9683324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 763 - 819
Target Start/End: Complemental strand, 9675486 - 9675430
Alignment:
Q  763 atataatatttttgagaagaaatgaggttgaaaatcccccaagtgcaaagcaatttc 819  Q
    ||||| || ||||||||||| | ||||||||| |||||| |||||||||||||||||    
T  9675486 atatattaattttgagaagagacgaggttgaatatccccgaagtgcaaagcaatttc 9675430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 824 - 860
Target Start/End: Original strand, 10102593 - 10102629
Alignment:
Q  824 gtcatatgtaaacgaatgttgcaggtgactgagttgt 860  Q
    ||||| |||||||||||||||||||||||||||||||    
T  10102593 gtcatttgtaaacgaatgttgcaggtgactgagttgt 10102629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 12106413 - 12106377
Alignment:
Q  147 acttttagaacttcacaccctgtgtccattctctttt 183  Q
    ||||||||||||||||||| |||||||||||||||||    
T  12106413 acttttagaacttcacaccatgtgtccattctctttt 12106377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 654 - 740
Target Start/End: Complemental strand, 9683509 - 9683423
Alignment:
Q  654 ttgttgttttgtcgaacttatatgcttatttacgtcttaaacttttgcgaatccggttcgctgaatgctggttatttctctgcttat 740  Q
    |||||||||||  |||| ||||||||||| | | ||||||||||| | | ||| ||||| | |||||| ||||||||| ||||||||    
T  9683509 ttgttgttttgctgaacatatatgcttatatgcatcttaaactttcgtgtatcaggttctcagaatgccggttatttccctgcttat 9683423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 10102179 - 10102217
Alignment:
Q  26 aacacaaatagtaaaaagcattcagagttgctacaatga 64  Q
    |||| |||||||||||||||||||||||| |||||||||    
T  10102179 aacataaatagtaaaaagcattcagagtttctacaatga 10102217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 658 - 740
Target Start/End: Complemental strand, 10210720 - 10210638
Alignment:
Q  658 tgttttgtcgaacttatatgcttatttacgtcttaaacttttgcgaatccggttcgctgaatgctggttatttctctgcttat 740  Q
    ||||||||  ||| ||| |||||||  || ||||||||||||| ||||| ||||| | ||||||| ||||||| |||||||||    
T  10210720 tgttttgttaaacatatgtgcttatacacatcttaaacttttgtgaatcaggttctcagaatgcttgttatttatctgcttat 10210638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University