View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19674_high_10 (Length: 254)
Name: NF19674_high_10
Description: NF19674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19674_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 22 - 232
Target Start/End: Original strand, 13853689 - 13853899
Alignment:
| Q |
22 |
attaacaaaacaaccaattatgtcactaaccggaaggtgtcccttaacaggaagatccttaataggaggtgtctcatcttgaacaggtgcaaaattacca |
121 |
Q |
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| T |
13853689 |
attaacaaaacaaccaattatgtcactaaccggaaggtgtcccttaacaggaagatccttaataggaggtgtctcatcttgaacaggtgcaaaattacca |
13853788 |
T |
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| Q |
122 |
gcaagccaatgatgacaaagtgaagaatcataaaagaatttcacaacaagcttctccaacaagtcaacagcttttgaactgaaacattttcttggttttg |
221 |
Q |
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| T |
13853789 |
gcaagccaatgatgacaaagtgaagaatcataaaagaatttcacaacaagcttttccaacaagtcaacagcttttgaactgaaacattttcttggttttg |
13853888 |
T |
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| Q |
222 |
gttccactttc |
232 |
Q |
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||||||||||| |
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| T |
13853889 |
gttccactttc |
13853899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 13872539 - 13872750
Alignment:
| Q |
21 |
tattaacaaaacaaccaattatgtcactaaccggaaggtgtcccttaacaggaagatccttaataggaggtgtctcatcttgaacaggtgcaaaattacc |
120 |
Q |
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||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||| ||||||||||| |
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| T |
13872539 |
tattatcaaaacaaccacttatgtcactaaccggaaggtgtcctttaacaggaagatcctttgtaggaggtgtctcatctttgacaggagcaaaattacc |
13872638 |
T |
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| Q |
121 |
agcaagccaatgatgacaaagtgaagaatcataaaagaatttcacaacaagcttctccaacaagtcaacagcttttgaactgaaacattttcttggtttt |
220 |
Q |
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| T |
13872639 |
agcaatccagtgatgagaaagtgaagaatcataaaagaacttcacaacaagattctccaacaaatcaacagcttttgaagtgaaacattttcttggtttt |
13872738 |
T |
|
| Q |
221 |
ggttccactttc |
232 |
Q |
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|||||||||||| |
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| T |
13872739 |
ggttccactttc |
13872750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 44 - 232
Target Start/End: Original strand, 13895030 - 13895218
Alignment:
| Q |
44 |
tcactaaccggaaggtgtcccttaacaggaagatccttaataggaggtgtctcatcttgaacaggtgcaaaattaccagcaagccaatgatgacaaagtg |
143 |
Q |
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||||| |||||||||| || ||||||||||| |||||| |||||||||||||||| | |||||||||||||||||| ||||||||||||||| ||||| |
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| T |
13895030 |
tcacttaccggaaggtagcctttaacaggaaggtccttagtaggaggtgtctcatccttaacaggtgcaaaattaccggcaagccaatgatgaggaagtg |
13895129 |
T |
|
| Q |
144 |
aagaatcataaaagaatttcacaacaagcttctccaacaagtcaacagcttttgaactgaaacattttcttggttttggttccactttc |
232 |
Q |
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| T |
13895130 |
atgaatcataaaacaacttcaccacaagcttctccaacaaatcaacagcttttgaactgaaacattttcttggttttggttccactttc |
13895218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 28 - 232
Target Start/End: Original strand, 13902778 - 13902983
Alignment:
| Q |
28 |
aaaacaaccaatta-tgtcactaaccggaaggtgtcccttaacaggaagatccttaataggaggtgtctcatcttgaacaggtgcaaaattaccagcaag |
126 |
Q |
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|||||||||||||| | |||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| | |||||||||||||||||||||||| |
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| T |
13902778 |
aaaacaaccaattactatcactaaccggaaggtgtcctttaataggaagatccttaataggaggtgtttcatccttaacaggtgcaaaattaccagcaag |
13902877 |
T |
|
| Q |
127 |
ccaatgatgacaaagtgaagaatcataaaagaatttcacaacaagcttctccaacaagtcaacagcttttgaactgaaacattttcttggttttggttcc |
226 |
Q |
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|||||||||| ||| |||||||||||||| || ||||||| || ||||||||| || ||||||||||||||| |||||| || || |||||||||||| |
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| T |
13902878 |
ccaatgatgaggaagcgaagaatcataaaacaacttcacaataatcttctccaataaatcaacagcttttgaagtgaaaccattactgggttttggttcc |
13902977 |
T |
|
| Q |
227 |
actttc |
232 |
Q |
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|||||| |
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|
| T |
13902978 |
actttc |
13902983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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