View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19674_low_13 (Length: 248)
Name: NF19674_low_13
Description: NF19674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19674_low_13 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 4 - 248
Target Start/End: Original strand, 24852201 - 24852446
Alignment:
| Q |
4 |
agaagcaggactactattagtagaaccagtaggaaactaaagcttgaaaggcttgaacttgtataggcaatctaaaccaactgcaccttcaaggagcact |
103 |
Q |
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| T |
24852201 |
agaagcagtactactattagtagagccagtaggaaactaaagcttgaaaggcttgaacttgtataggcaatctaaaccaactgcaccttcaaggagcact |
24852300 |
T |
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| Q |
104 |
tgattagatgcctgggatttaataaaacacttctgagcatgaagttcaaacaaaacattatcgtcatgagcaaatttagtaactgacatgagattatata |
203 |
Q |
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| T |
24852301 |
tgattagatgcctgggatttaataaaacacttctgagcatgaagttcaaacaaaacattatcgtcatgagcaaatttagtaactgacatgagattatata |
24852400 |
T |
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| Q |
204 |
gttaaattaatgaaaagctacactaggtcgaggt-gagtataagaa |
248 |
Q |
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| T |
24852401 |
gttaaattaatgaaaagctacactaggtcgaggtcgagtataagaa |
24852446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 24839872 - 24839938
Alignment:
| Q |
47 |
ttgaaaggcttgaacttgtataggcaatctaaaccaactgcaccttcaaggagcacttgattagatg |
113 |
Q |
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| T |
24839872 |
ttgaaaggcttgaacttgtataggccatctaaaccaactgcaccttcaaggagcacctgattagatg |
24839938 |
T |
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