View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19674_low_2 (Length: 877)

Name: NF19674_low_2
Description: NF19674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19674_low_2
NF19674_low_2
[»] chr8 (13 HSPs)
chr8 (11-861)||(12401935-12402787)
chr8 (695-787)||(24205749-24205841)
chr8 (695-788)||(21465448-21465541)
chr8 (695-796)||(29447472-29447573)
chr8 (695-767)||(6065587-6065659)
chr8 (695-787)||(11944702-11944794)
chr8 (749-792)||(25172682-25172725)
chr8 (698-796)||(4122182-4122280)
chr8 (754-796)||(14634130-14634172)
chr8 (695-796)||(11803287-11803388)
chr8 (695-796)||(15816059-15816160)
chr8 (695-796)||(22652004-22652105)
chr8 (697-794)||(29655910-29656007)
[»] chr1 (15 HSPs)
chr1 (695-796)||(5944311-5944412)
chr1 (695-785)||(31694640-31694730)
chr1 (695-796)||(47989525-47989626)
chr1 (724-796)||(9629859-9629931)
chr1 (695-795)||(12993223-12993323)
chr1 (761-796)||(6427378-6427413)
chr1 (695-796)||(25361914-25362011)
chr1 (695-796)||(6427492-6427593)
chr1 (695-796)||(9828072-9828173)
chr1 (735-796)||(12713297-12713358)
chr1 (735-796)||(12717388-12717449)
chr1 (707-796)||(16164257-16164346)
chr1 (695-736)||(29144321-29144362)
chr1 (743-796)||(44482258-44482311)
chr1 (695-736)||(46940749-46940790)
[»] chr3 (6 HSPs)
chr3 (695-796)||(15796224-15796325)
chr3 (695-796)||(8039765-8039866)
chr3 (696-785)||(13806275-13806363)
chr3 (695-796)||(16789040-16789140)
chr3 (762-796)||(15314873-15314907)
chr3 (767-796)||(3587335-3587364)
[»] chr2 (5 HSPs)
chr2 (695-796)||(35056896-35056997)
chr2 (696-796)||(36756275-36756375)
chr2 (749-787)||(18054787-18054825)
chr2 (695-796)||(4207885-4207985)
chr2 (695-784)||(42511323-42511411)
[»] chr6 (7 HSPs)
chr6 (695-796)||(16766725-16766826)
chr6 (695-785)||(10339055-10339145)
chr6 (695-786)||(7248396-7248487)
chr6 (749-796)||(11424695-11424742)
chr6 (695-765)||(7977771-7977841)
chr6 (750-796)||(15443723-15443769)
chr6 (755-796)||(20576623-20576664)
[»] chr5 (4 HSPs)
chr5 (695-794)||(32766873-32766972)
chr5 (695-787)||(3966540-3966632)
chr5 (744-796)||(18592101-18592153)
chr5 (741-786)||(19453042-19453087)
[»] chr4 (5 HSPs)
chr4 (744-796)||(13134478-13134530)
chr4 (695-787)||(30982808-30982900)
chr4 (695-765)||(35157926-35157996)
chr4 (767-796)||(10013932-10013961)
chr4 (767-796)||(10021073-10021102)
[»] chr7 (8 HSPs)
chr7 (749-796)||(8160444-8160491)
chr7 (742-785)||(35297649-35297692)
chr7 (699-758)||(13770751-13770810)
chr7 (709-796)||(15902850-15902937)
chr7 (766-796)||(38143251-38143281)
chr7 (695-796)||(2334278-2334378)
chr7 (706-779)||(11072341-11072414)
chr7 (695-796)||(24339670-24339771)
[»] scaffold0022 (1 HSPs)
scaffold0022 (755-796)||(99921-99962)
[»] scaffold0003 (1 HSPs)
scaffold0003 (695-796)||(241622-241723)
[»] scaffold0039 (1 HSPs)
scaffold0039 (744-787)||(84952-84995)


Alignment Details
Target: chr8 (Bit Score: 676; Significance: 0; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 676; E-Value: 0
Query Start/End: Original strand, 11 - 861
Target Start/End: Original strand, 12401935 - 12402787
Alignment:
Q  11 atcatcattgtgaattaagccagaaacaaatttagtgtcacaatcacacacaaactagatgcttaaaaatgctatgaagcaatgagacaaacacaaatac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12401935 atcatcattgtgaattaagccagaaacaaatttagtgtcacaatcacacacaaactagatgcttaaaaatgctatgaagcaatgagacaaacacaaatac 12402034  T
Q  111 tggacacgacagtaacacgttgttactgataatttgacaagcgctgacaatannnnnnn-acactcttattattgatgttaattcatgcaagtctcgcta 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||    
T  12402035 tggacacgacagtaacacgttgttactgataatttgacaagcgctgacaatattttttttacactcttattattgatgttaattcatgcaagtctcgcta 12402134  T
Q  210 ctttattagttacattttctatgtggtattaatggtggaatccacatgaatttcaactaataatagaacaagtattgnnnnnnntgtgtcactaatacnn 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||       ||||||||||||||      
T  12402135 ctttattagttacattttctatgtggtattaatggtggaatccacatgaatttcaactaataatagagcaagtattgaaaaaaatgtgtcactaatactt 12402234  T
Q  310 nnnnnngtagaatgcgagtgtaaattggttttattgtttttt--aacaggtgcgaaatattcactagctttgttgatgattaatctcagtatggaaatat 407  Q
          |||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12402235 ttttttgtagaatgtgagtgtaaattggttttattgttttttttaacaggtgcgaaatattcactagctttgttgatgattaatctcagtatggaaatat 12402334  T
Q  408 gactcaa--actttagtgtggtctccttttcaaccacactatttttatcttcaaagcttgaattccaaacatcacttaaggagtccttaatgtctaaata 505  Q
    ||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12402335 gactcgagaactttagtgtggtctccttttcaaccacactatttttatcttcaaagcttgaattccaaacatcacttaaggagtccttaatgtctaaata 12402434  T
Q  506 atgttggtatgatttaaaattatattaacaaacatgcccttaatcatatttatttttgactgaagttcttgatgatatagtaaacatgattttaggaatt 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12402435 atgttggtatgatttaaaattatattaacaaacatgcccttaatcatatttatttttgactgaagttcttgatgatatagtaaacatgattttaggaatt 12402534  T
Q  606 aataatatagtgtgataaaatagtaaaataggagcccttaatcattgaatgtgtttatgccaaacttgttgctcattatattaaagagttatgaagcacg 705  Q
    |||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12402535 aataatatagtgtga--------taaaataggagcccttaatcattgaatgtgtttatgccaaacttgttgctcattatattaaagagttatgaagcacg 12402626  T
Q  706 aacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacat-----cgacacgacaccaacacatataattacattaaattatttgt 800  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||    
T  12402627 aacactcttcaaattatacgtgttccggtgtcgggcatgtgttgtgttcgacatcgacacgacacgacaccaacacatataattacattaaattatttgt 12402726  T
Q  801 ggtatcagtgtccatgtcatatcagatgtttgtgttcatatatgcgcttcttggttaaaga 861  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||| | ||||||||    
T  12402727 ggtatcagtgtccatgtcgtatcaggtgtttgtgttcatatatgcgcttcatagttaaaga 12402787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 695 - 787
Target Start/End: Original strand, 24205749 - 24205841
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattaca 787  Q
    |||||| |||| |||||| || ||||| ||||||||||||||  | |||| ||||||||||||| |||||| |||||||||||||| ||||||    
T  24205749 tatgaaacacggacactcctcggattaggcgtgttccggtgtcagacatgcgttgtgttcgacaccgacacaacaccaacacatattattaca 24205841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 695 - 788
Target Start/End: Complemental strand, 21465541 - 21465448
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattacat 788  Q
    ||||||||||| |||||| ||| |||| |||| | || ||||||| || |||| |||| |||||  |||||||||||||||| | |||||||||    
T  21465541 tatgaagcacggacactcctcaaattaggcgtatccctgtgttggacacgtgtcgtgtccgacactgacacgacaccaacacttgtaattacat 21465448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 695 - 796
Target Start/End: Complemental strand, 29447573 - 29447472
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattacattaaatt 794  Q
    ||||||||||| |||||| || |||||  | ||| ||||||| || ||  ||| ||||  |||| |||||||||||||||||||||||||||| | ||||    
T  29447573 tatgaagcacggacactcctccgattagacctgtcccggtgtcggacacatgtcgtgtctgacaccgacacgacaccaacacatataattacacttaatt 29447474  T
Q  795 at 796  Q
    ||    
T  29447473 at 29447472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 695 - 767
Target Start/End: Original strand, 6065587 - 6065659
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacga 767  Q
    ||||||||||| |||||| |   ||||||||||||||||||| || ||||||| |||| |||||| |||||||    
T  6065587 tatgaagcacggacactccttgaattatgcgtgttccggtgtcggacatgtgtcgtgtccgacattgacacga 6065659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 695 - 787
Target Start/End: Complemental strand, 11944794 - 11944702
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattaca 787  Q
    |||||||||||||||||| || ||||| ||||||  |||||| ||  |  ||| ||||  |||||| |||||||||| |||||||||||||||    
T  11944794 tatgaagcacgaacactcatcggattaggcgtgtctcggtgtcggatacatgtcgtgtatgacatcaacacgacaccgacacatataattaca 11944702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 792
Target Start/End: Original strand, 25172682 - 25172725
Alignment:
Q  749 gtgttcgacatcgacacgacaccaacacatataattacattaaa 792  Q
    |||| |||||| ||||||||||| ||||||||||||||||||||    
T  25172682 gtgtccgacattgacacgacaccgacacatataattacattaaa 25172725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 698 - 796
Target Start/End: Original strand, 4122182 - 4122280
Alignment:
Q  698 gaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattacattaaattat 796  Q
    |||||||| ||||||||  |||||  |||||||||||||    || |||| ||||| ||||| ||||| ||||| ||||||||||||||| | ||||||    
T  4122182 gaagcacggacactctttggattagacgtgttccggtgtccaacacgtgtcgtgtttgacattgacacaacaccgacacatataattacaatgaattat 4122280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 754 - 796
Target Start/End: Original strand, 14634130 - 14634172
Alignment:
Q  754 cgacatcgacacgacaccaacacatataattacattaaattat 796  Q
    |||||||||||||||||||||| ||||||||||| | ||||||    
T  14634130 cgacatcgacacgacaccaacaaatataattacactgaattat 14634172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 796
Target Start/End: Complemental strand, 11803388 - 11803287
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattacattaaatt 794  Q
    ||||||||||| |||||| || |||||  ||||| || |||| || ||||||| || | | ||| | |||| ||||||||||||||||||||| | ||||    
T  11803388 tatgaagcacggacactcctcggattagacgtgtacctgtgtcggacatgtgtcgtatccaacaccaacacaacaccaacacatataattacactgaatt 11803289  T
Q  795 at 796  Q
    ||    
T  11803288 at 11803287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 796
Target Start/End: Original strand, 15816059 - 15816160
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattacattaaatt 794  Q
    ||||||||||| |||||  || ||||| |||||| ||||||| ||    |||| |||| ||||| | |||||||||| |||| |||||||||| ||||||    
T  15816059 tatgaagcacggacacttctcggattaggcgtgtcccggtgtcggattcgtgtcgtgtccgacaccaacacgacaccgacacttataattacactaaatt 15816158  T
Q  795 at 796  Q
    ||    
T  15816159 at 15816160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 796
Target Start/End: Complemental strand, 22652105 - 22652004
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattacattaaatt 794  Q
    ||||||||||| |||||| || |||||  ||||| ||||||| || ||  ||| |||| ||||| |||||||||||| |||| | |||||| ||| ||||    
T  22652105 tatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacatgtcgtgtccgacaccgacacgacaccgacacttgtaattatattgaatt 22652006  T
Q  795 at 796  Q
    ||    
T  22652005 at 22652004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 697 - 794
Target Start/End: Original strand, 29655910 - 29656007
Alignment:
Q  697 tgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattacattaaatt 794  Q
    |||||||| | ||| |||||||||| ||||||| ||||||  |  ||||||||||| |||||  |||||||| || |||| | |||||| ||||||||    
T  29655910 tgaagcacaatcacacttcagattaggcgtgtttcggtgtcagatatgtgttgtgtccgacactgacacgacgcctacacttgtaattatattaaatt 29656007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 4e-19; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 695 - 796
Target Start/End: Complemental strand, 5944412 - 5944311
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattacattaaatt 794  Q
    |||||||||||||||||| || ||||| |||| | ||||||| || |||||||||||| || ||||||||||||||| |||| |||||||||| | ||||    
T  5944412 tatgaagcacgaacactcctcggattaggcgtatcccggtgtcggacatgtgttgtgtccgtcatcgacacgacaccgacacttataattacactgaatt 5944313  T
Q  795 at 796  Q
    ||    
T  5944312 at 5944311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 695 - 785
Target Start/End: Original strand, 31694640 - 31694730
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataatta 785  Q
    ||||||||||| |||||| |||||||| |||||||||||||| |   ||||||||||| ||||| |||||||||||| |||| | ||||||    
T  31694640 tatgaagcacggacactcctcagattaggcgtgttccggtgtcgaatatgtgttgtgtccgacaccgacacgacaccgacacttgtaatta 31694730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 695 - 796
Target Start/End: Complemental strand, 47989626 - 47989525
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattacattaaatt 794  Q
    ||||||||||| |||||| || ||||| |||||| ||| |||  | ||||||| |||| ||||| |||||||||||| |||| | |||||||| | ||||    
T  47989626 tatgaagcacggacactcctcggattaggcgtgtcccgatgtcagacatgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaatt 47989527  T
Q  795 at 796  Q
    ||    
T  47989526 at 47989525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 724 - 796
Target Start/End: Original strand, 9629859 - 9629931
Alignment:
Q  724 cgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattacattaaattat 796  Q
    ||||| ||||||| || ||||||| |||| |||||||||||||||||| |||| |||||| ||| | ||||||    
T  9629859 cgtgtcccggtgtcggacatgtgtcgtgtccgacatcgacacgacaccgacacttataatcacactgaattat 9629931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 695 - 795
Target Start/End: Complemental strand, 12993323 - 12993223
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattacattaaatt 794  Q
    |||||||||| |||||| || ||||||||||| || |||||| || ||| |||  ||| | |||| ||||| ||||| ||| ||||||||||||| ||||    
T  12993323 tatgaagcaccaacactttttagattatgcgtatttcggtgtcggacatatgtcatgtccaacattgacacaacaccgacatatataattacattgaatt 12993224  T
Q  795 a 795  Q
    |    
T  12993223 a 12993223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 761 - 796
Target Start/End: Complemental strand, 6427413 - 6427378
Alignment:
Q  761 gacacgacaccaacacatataattacattaaattat 796  Q
    ||||||||||||||||||||||||||||| ||||||    
T  6427413 gacacgacaccaacacatataattacattgaattat 6427378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 695 - 796
Target Start/End: Complemental strand, 25362011 - 25361914
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattacattaaatt 794  Q
    ||||||||||| ||||||||| ||||| |  ||||||||||| || |||||   |||| ||||| |||||||||||  ||||||||||||||| | ||||    
T  25362011 tatgaagcacggacactcttcggattagg--tgttccggtgtcggacatgtc--gtgtccgacaccgacacgacactgacacatataattacactgaatt 25361916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 796
Target Start/End: Complemental strand, 6427593 - 6427492
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattacattaaatt 794  Q
    ||||||||||| |||||| |||||||| |||||| ||||||| || || |||| |||| ||||  | |||||||||  |||| | || ||||||| ||||    
T  6427593 tatgaagcacggacactcatcagattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacgcctacacgacactgacacttgtagttacattgaatt 6427494  T
Q  795 at 796  Q
    ||    
T  6427493 at 6427492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 796
Target Start/End: Complemental strand, 9828173 - 9828072
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattacattaaatt 794  Q
    ||||||||||| |||||| || |||||  ||||| ||||||| || || |||| ||||  ||||  ||||||||||| ||||||| ||||||| | ||||    
T  9828173 tatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacgtgtcgtgtctgacacggacacgacaccgacacataaaattacactgaatt 9828074  T
Q  795 at 796  Q
    ||    
T  9828073 at 9828072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 735 - 796
Target Start/End: Original strand, 12713297 - 12713358
Alignment:
Q  735 gttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattacattaaattat 796  Q
    ||||| || ||||||||| ||||| |||||  ||||||| ||||||||||||| ||||||||    
T  12713297 gttggacacgtgttgtgtacgacaccgacataacaccaatacatataattacactaaattat 12713358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 735 - 796
Target Start/End: Original strand, 12717388 - 12717449
Alignment:
Q  735 gttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattacattaaattat 796  Q
    ||||| || ||||||||| ||||| |||||  ||||||| ||||||||||||| ||||||||    
T  12717388 gttggacacgtgttgtgtacgacaccgacataacaccaatacatataattacactaaattat 12717449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 707 - 796
Target Start/End: Original strand, 16164257 - 16164346
Alignment:
Q  707 acactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattacattaaattat 796  Q
    ||||||||| ||||| |||||| | ||||| || || |||||| || | ||| | ||||||||   ||||||||||||||||||||||||    
T  16164257 acactcttcggattaggcgtgtcctggtgtcggacacgtgttgcgtccaacaccaacacgacaatgacacatataattacattaaattat 16164346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 736
Target Start/End: Original strand, 29144321 - 29144362
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgt 736  Q
    ||||||||||| ||||||||| ||||| ||||||||||||||    
T  29144321 tatgaagcacggacactcttcggattaggcgtgttccggtgt 29144362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 743 - 796
Target Start/End: Complemental strand, 44482311 - 44482258
Alignment:
Q  743 tgtgttgtgttcgacatcgacacgacaccaacacatataattacattaaattat 796  Q
    ||||| |||| ||||| |||||||||||| ||||||||||||||| | ||||||    
T  44482311 tgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgaattat 44482258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 736
Target Start/End: Original strand, 46940749 - 46940790
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgt 736  Q
    |||||||||||||||||| || ||||| ||||||||||||||    
T  46940749 tatgaagcacgaacactcctcggattaggcgtgttccggtgt 46940790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 9e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 695 - 796
Target Start/End: Original strand, 15796224 - 15796325
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattacattaaatt 794  Q
    ||||||||||||||||||||  ||||| ||||||||||||||||| || ||||||||| ||||| | |||||||||| |||  | |||||||| | ||||    
T  15796224 tatgaagcacgaacactctttggattaggcgtgttccggtgttggacacgtgttgtgtccgacacctacacgacaccgacaattgtaattacactgaatt 15796323  T
Q  795 at 796  Q
    ||    
T  15796324 at 15796325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 695 - 796
Target Start/End: Original strand, 8039765 - 8039866
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattacattaaatt 794  Q
    ||||||||||  | ||||||| ||||| |||||| ||||||| || ||||| |  ||| ||||| |||||||||||| ||||||||||||||| | ||||    
T  8039765 tatgaagcacagatactcttcggattaagcgtgtcccggtgtcggacatgtctcatgtccgacaccgacacgacaccgacacatataattacactgaatt 8039864  T
Q  795 at 796  Q
    ||    
T  8039865 at 8039866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 696 - 785
Target Start/End: Complemental strand, 13806363 - 13806275
Alignment:
Q  696 atgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataatta 785  Q
    |||||||||| ||||||| | ||||| |||||| |||| || || ||||||||||||   ||| |||||||||||| |||||||||||||    
T  13806363 atgaagcacggacactct-cggattaggcgtgtcccggggtcggtcatgtgttgtgtctaacaccgacacgacaccgacacatataatta 13806275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 695 - 796
Target Start/End: Complemental strand, 16789140 - 16789040
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattacattaaatt 794  Q
    ||||||||||| |||||| ||| |||| | |||| ||| |||||| |||||||  ||| |||||  |||||||||||||||| |||||||||| | ||||    
T  16789140 tatgaagcacggacactcctcaaattaggtgtgtcccg-tgttggacatgtgtcatgtccgacactgacacgacaccaacacttataattacactgaatt 16789042  T
Q  795 at 796  Q
    ||    
T  16789041 at 16789040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 762 - 796
Target Start/End: Original strand, 15314873 - 15314907
Alignment:
Q  762 acacgacaccaacacatataattacattaaattat 796  Q
    |||||||||||||||||||||||||| ||||||||    
T  15314873 acacgacaccaacacatataattacactaaattat 15314907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 767 - 796
Target Start/End: Original strand, 3587335 - 3587364
Alignment:
Q  767 acaccaacacatataattacattaaattat 796  Q
    ||||||||||||||||||||||||||||||    
T  3587335 acaccaacacatataattacattaaattat 3587364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 9e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 695 - 796
Target Start/End: Complemental strand, 35056997 - 35056896
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattacattaaatt 794  Q
    ||||||||||| |||||| |||||||| ||||||| | |||| || || |||| |||| ||||| |||||||||||| ||||||||||||||| | ||||    
T  35056997 tatgaagcacggacactcctcagattaggcgtgtttccgtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgaatt 35056898  T
Q  795 at 796  Q
    ||    
T  35056897 at 35056896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 696 - 796
Target Start/End: Original strand, 36756275 - 36756375
Alignment:
Q  696 atgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattacattaaatta 795  Q
    |||||||||  |||||| |  ||||| ||||||| |||||| || ||||||||||||||||||   |||||||||| |||| |||||||||| | |||||    
T  36756275 atgaagcacagacactcctaggattaggcgtgttgcggtgtcggacatgtgttgtgttcgacactaacacgacaccgacacttataattacactgaatta 36756374  T
Q  796 t 796  Q
    |    
T  36756375 t 36756375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 749 - 787
Target Start/End: Original strand, 18054787 - 18054825
Alignment:
Q  749 gtgttcgacatcgacacgacaccaacacatataattaca 787  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  18054787 gtgttcgacaccgacacgacaccaacacatataattaca 18054825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 796
Target Start/End: Complemental strand, 4207985 - 4207885
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattacattaaatt 794  Q
    |||||| || ||||||||||| |||||  |||||| |||||| |  || |||| |||| ||||| |||||||| ||| ||| ||||||||||| ||||||    
T  4207985 tatgaaacatgaacactcttcggattaaacgtgtttcggtgtcgaacacgtgtcgtgtccgacaccgacacgataccgaca-atataattacactaaatt 4207887  T
Q  795 at 796  Q
    ||    
T  4207886 at 4207885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 784
Target Start/End: Original strand, 42511323 - 42511411
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataatt 784  Q
    ||||||||||| |||||| || |||||  ||||| || |||| || || ||||||||| |||||  || |||||||||||||||||||||    
T  42511323 tatgaagcacggacactcctcggattagccgtgtccctgtgtcggacacgtgttgtgtccgacactga-acgacaccaacacatataatt 42511411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 695 - 796
Target Start/End: Complemental strand, 16766826 - 16766725
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattacattaaatt 794  Q
    ||||||||||| ||| ||||| ||||| |||||| ||||||| || || ||||||||| ||||| |||||||||||| |||| | |||||||| | ||||    
T  16766826 tatgaagcacggacattcttcggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacaccgacacgacaccgacacttgtaattacactgaatt 16766727  T
Q  795 at 796  Q
    ||    
T  16766726 at 16766725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 695 - 785
Target Start/End: Original strand, 10339055 - 10339145
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataatta 785  Q
    ||||||||||| |||||| || ||||| |||||| || |||| || ||||||| |||| ||||| ||||||| |||  |||||||||||||    
T  10339055 tatgaagcacggacactcctccgattaggcgtgtcccagtgtcggacatgtgtcgtgtccgacaccgacacggcactgacacatataatta 10339145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 695 - 786
Target Start/End: Complemental strand, 7248487 - 7248396
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattac 786  Q
    ||||||||||| |||||| || ||||   ||||| ||||||| || ||  |||||||| | ||| ||||||||| |||||||||||||||||    
T  7248487 tatgaagcacggacactcctcggatttgacgtgtcccggtgtcggacacatgttgtgtccaacaccgacacgactccaacacatataattac 7248396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 796
Target Start/End: Original strand, 11424695 - 11424742
Alignment:
Q  749 gtgttcgacatcgacacgacaccaacacatataattacattaaattat 796  Q
    |||||||||| |||||| ||||||||||||||||||| ||| ||||||    
T  11424695 gtgttcgacaccgacacaacaccaacacatataattatattgaattat 11424742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 695 - 765
Target Start/End: Original strand, 7977771 - 7977841
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacac 765  Q
    |||||||||||||||||| | |||||| ||||||| || ||| || ||| |||||||| ||||| ||||||    
T  7977771 tatgaagcacgaacactccttagattaggcgtgtttcgttgtcggacatatgttgtgtccgacaccgacac 7977841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 750 - 796
Target Start/End: Complemental strand, 15443769 - 15443723
Alignment:
Q  750 tgttcgacatcgacacgacaccaacacatataattacattaaattat 796  Q
    |||||||||||||||| ||||||||| ||||||||| ||| ||||||    
T  15443769 tgttcgacatcgacacaacaccaacatatataattatattgaattat 15443723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 755 - 796
Target Start/End: Original strand, 20576623 - 20576664
Alignment:
Q  755 gacatcgacacgacaccaacacatataattacattaaattat 796  Q
    |||||||||||||||||||||| |||||||||| | ||||||    
T  20576623 gacatcgacacgacaccaacacttataattacactgaattat 20576664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 695 - 794
Target Start/End: Original strand, 32766873 - 32766972
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattacattaaatt 794  Q
    ||||||||||| |||||| ||||||||  ||| | | ||||| || || |||| || ||||||| ||||||||||| |||||||||||||||||| ||||    
T  32766873 tatgaagcacggacactcctcagattagacgtatcctggtgtcggacacgtgtcgttttcgacaccgacacgacacaaacacatataattacattgaatt 32766972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 695 - 787
Target Start/End: Complemental strand, 3966632 - 3966540
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattaca 787  Q
    ||||||||||| |||||| || |||||  ||||| ||  |||||| ||  |||||||| |||||  ||||||||||| |||||||||||||||    
T  3966632 tatgaagcacggacactcctcggattagacgtgtccctctgttggacacatgttgtgtccgacactgacacgacaccgacacatataattaca 3966540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 744 - 796
Target Start/End: Complemental strand, 18592153 - 18592101
Alignment:
Q  744 gtgttgtgttcgacatcgacacgacaccaacacatataattacattaaattat 796  Q
    ||||||||| ||||| ||||||||||||  |||||||||||||||| ||||||    
T  18592153 gtgttgtgtccgacaccgacacgacaccggcacatataattacattgaattat 18592101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 741 - 786
Target Start/End: Original strand, 19453042 - 19453087
Alignment:
Q  741 catgtgttgtgttcgacatcgacacgacaccaacacatataattac 786  Q
    ||||||| |||| |||||| ||||||||||| ||||||||||||||    
T  19453042 catgtgtcgtgtccgacattgacacgacaccgacacatataattac 19453087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 744 - 796
Target Start/End: Complemental strand, 13134530 - 13134478
Alignment:
Q  744 gtgttgtgttcgacatcgacacgacaccaacacatataattacattaaattat 796  Q
    |||||||||||||| ||||||||||| | ||||||||||||||| ||||||||    
T  13134530 gtgttgtgttcgacgtcgacacgacatcgacacatataattacactaaattat 13134478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 695 - 787
Target Start/End: Original strand, 30982808 - 30982900
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattaca 787  Q
    ||||||||||| ||||||||  ||||| |||||| ||||||| || || |||| ||||  |||| |||||||||||| |||| ||||||||||    
T  30982808 tatgaagcacggacactctttggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacgacaccgacacttataattaca 30982900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 695 - 765
Target Start/End: Original strand, 35157926 - 35157996
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacac 765  Q
    ||||||||||| |||||  || ||||| ||||||||||||||||| ||||||| ||||  |||| ||||||    
T  35157926 tatgaagcacggacacttctcggattaagcgtgttccggtgttggacatgtgtcgtgtcagacaccgacac 35157996  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 767 - 796
Target Start/End: Complemental strand, 10013961 - 10013932
Alignment:
Q  767 acaccaacacatataattacattaaattat 796  Q
    ||||||||||||||||||||||||||||||    
T  10013961 acaccaacacatataattacattaaattat 10013932  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 767 - 796
Target Start/End: Complemental strand, 10021102 - 10021073
Alignment:
Q  767 acaccaacacatataattacattaaattat 796  Q
    ||||||||||||||||||||||||||||||    
T  10021102 acaccaacacatataattacattaaattat 10021073  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000008; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 749 - 796
Target Start/End: Complemental strand, 8160491 - 8160444
Alignment:
Q  749 gtgttcgacatcgacacgacaccaacacatataattacattaaattat 796  Q
    |||||||||| |||||||| ||||||||||||||||||| ||||||||    
T  8160491 gtgttcgacaccgacacgataccaacacatataattacactaaattat 8160444  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 742 - 785
Target Start/End: Original strand, 35297649 - 35297692
Alignment:
Q  742 atgtgttgtgttcgacatcgacacgacaccaacacatataatta 785  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||    
T  35297649 atgtgttatgttcgacatcaacacgacaccaacacatataatta 35297692  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 699 - 758
Target Start/End: Complemental strand, 13770810 - 13770751
Alignment:
Q  699 aagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgaca 758  Q
    ||||||| ||||||||| ||||| |||||||||||||| || || ||||||||| |||||    
T  13770810 aagcacggacactcttcggattaggcgtgttccggtgtcggacacgtgttgtgtccgaca 13770751  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 709 - 796
Target Start/End: Complemental strand, 15902937 - 15902850
Alignment:
Q  709 actcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattacattaaattat 796  Q
    |||| ||| |||| |||||| | ||| | |||||||||| |||| ||| | |||||| ||||| ||||||||||||||| ||||||||    
T  15902937 actcctcaaattaagcgtgtcctggtctcgggcatgtgtcgtgtccgataccgacacaacaccgacacatataattacactaaattat 15902850  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 766 - 796
Target Start/End: Complemental strand, 38143281 - 38143251
Alignment:
Q  766 gacaccaacacatataattacattaaattat 796  Q
    |||||||||||||||||||||||||||||||    
T  38143281 gacaccaacacatataattacattaaattat 38143251  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 796
Target Start/End: Complemental strand, 2334378 - 2334278
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattacattaaatt 794  Q
    |||||| |||| |||||| || |||||  |||||| | |||| || ||||||| |||| ||||| |||||||||||| |||| | |||||||| ||||||    
T  2334378 tatgaaacacggacactcctcggattagacgtgtttcagtgtcggacatgtgtcgtgtccgaca-cgacacgacaccgacacttgtaattacactaaatt 2334280  T
Q  795 at 796  Q
    ||    
T  2334279 at 2334278  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 706 - 779
Target Start/End: Complemental strand, 11072414 - 11072341
Alignment:
Q  706 aacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacata 779  Q
    |||||||||||||||| | || |||||||||||| ||||| | ||||  || | |||||||||||| |||||||    
T  11072414 aacactcttcagattaggtgtattccggtgttggtcatgtatcgtgtcagataccgacacgacaccgacacata 11072341  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 796
Target Start/End: Complemental strand, 24339771 - 24339670
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattacattaaatt 794  Q
    |||||||||||  ||||| || ||||| |||||| ||||||| ||  | |||| |||| ||||| |||||||||||| |||| | |||||||| | ||||    
T  24339771 tatgaagcacgggcactcctcggattaggcgtgtcccggtgtcggatacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaatt 24339672  T
Q  795 at 796  Q
    ||    
T  24339671 at 24339670  T

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Target: scaffold0022 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 755 - 796
Target Start/End: Complemental strand, 99962 - 99921
Alignment:
Q  755 gacatcgacacgacaccaacacatataattacattaaattat 796  Q
    ||||| ||||||||||||||||||||||||||||| ||||||    
T  99962 gacattgacacgacaccaacacatataattacattgaattat 99921  T

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Target: scaffold0003 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 695 - 796
Target Start/End: Complemental strand, 241723 - 241622
Alignment:
Q  695 tatgaagcacgaacactcttcagattatgcgtgttccggtgttgggcatgtgttgtgttcgacatcgacacgacaccaacacatataattacattaaatt 794  Q
    ||||||||||| |||||  || ||||| |||||| ||||||| || || |||| |||| ||||| | |||||||||| ||||  ||||||||| ||||||    
T  241723 tatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccaacacgacaccgacactcataattacactaaatt 241624  T
Q  795 at 796  Q
    ||    
T  241623 at 241622  T

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Target: scaffold0039 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 744 - 787
Target Start/End: Original strand, 84952 - 84995
Alignment:
Q  744 gtgttgtgttcgacatcgacacgacaccaacacatataattaca 787  Q
    ||||||||||||||||||||| |||||| ||| |||||||||||    
T  84952 gtgttgtgttcgacatcgacatgacaccgacatatataattaca 84995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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