View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19674_low_7 (Length: 363)
Name: NF19674_low_7
Description: NF19674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19674_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 141 - 343
Target Start/End: Original strand, 31052541 - 31052743
Alignment:
| Q |
141 |
cacaatacctgagaattttatcatatctcagcattacaaaatgattctctttgcaaaataatccaccgttgcttaatattctccatcaacaaacaagaga |
240 |
Q |
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| T |
31052541 |
cacaatacctgagaattttatcatatctcagcattacaaaatgattctctctgcaacacaatccaccgttgcttaatattctctatcaacaaacaagaga |
31052640 |
T |
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| Q |
241 |
acctatctattctattctattccatctttctgcaattccctactttcttttcattgctttccaagccaagaatctctccctataccacttccttcataga |
340 |
Q |
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| T |
31052641 |
acctatctattctattctattccatctttctgcaattccctactttcttttcattgctttccaagccaagaatctctccctataccacttccttcataga |
31052740 |
T |
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| Q |
341 |
ttc |
343 |
Q |
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||| |
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| T |
31052741 |
ttc |
31052743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 31052394 - 31052478
Alignment:
| Q |
16 |
aaaatgcttccaaatttggaccataaagcaatacaaatacaacactcatccatgcatgcaaacac--acacttttatgcttgata |
98 |
Q |
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| T |
31052394 |
aaaatgcttccaaatttggaccataaagcaatacaaatacaacactcatccatgcatgcaaacacaaacacttttatgcttgata |
31052478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 318
Target Start/End: Complemental strand, 34746221 - 34746185
Alignment:
| Q |
282 |
actttcttttcattgctttccaagccaagaatctctc |
318 |
Q |
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| T |
34746221 |
actttctcttcattgctttccaagccaagaatctctc |
34746185 |
T |
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