View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19674_low_8 (Length: 339)
Name: NF19674_low_8
Description: NF19674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19674_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 40410818 - 40410669
Alignment:
| Q |
19 |
attgcatctgcaaaagagattatggtgcatattattcaacgggattctaaataaggtagtttggcttctcatggaagctattttggcaaaggatcctact |
118 |
Q |
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| T |
40410818 |
attgcatctgcaaaagagattatggtgcatattattcaacgggattctaaataaggtagtttggcttctcatggaagctattttggcaaaggatcctact |
40410719 |
T |
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| Q |
119 |
ctccttgactaataaatagttagagaagggtaatgttcaagggctcagta |
168 |
Q |
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| T |
40410718 |
ctccttgactaataaatagttagagaagggtaatgttcaagggctcagta |
40410669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 178 - 329
Target Start/End: Complemental strand, 40410618 - 40410474
Alignment:
| Q |
178 |
aggggtgtttctatgtacgttgtttagcatacagtttcttgattaataaatatggcttgggttgtggcgtggctatcatgcatgccagctgaaggtaata |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40410618 |
aggggtgtttctatgtacgttgtttagcatacagtttcttgattaata----tggcttgggttgtggcgtggctatcatgcatgccagctgaaggtaa-- |
40410525 |
T |
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| Q |
278 |
aggaaatatctaagggtttggtgctcaatgtgacttggaaaatccacctatg |
329 |
Q |
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| T |
40410524 |
-ggaaatatctaagggtttggtgctcaatgtgacttggaaaatccacctatg |
40410474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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