View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19674_low_9 (Length: 308)
Name: NF19674_low_9
Description: NF19674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19674_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 306
Target Start/End: Complemental strand, 24852732 - 24852442
Alignment:
| Q |
16 |
ctcttttcatcccgagtatcaaatttatgcttcagttgggcatatgatgctactcgttttcggtatctttttgatcataattctaatggttaatttgctc |
115 |
Q |
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| T |
24852732 |
ctcttttcatcccgagtatcaaatttatgcttcagttgggcatatgatgctactcgttttcggtatcttttttatcataattctaatggttaatttgctc |
24852633 |
T |
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| Q |
116 |
atccagctccaagacctcaatttcctctgcacctgcttctcatcttgatacaacctggtatctagattttggtgcttcacatcatctcacatccattcag |
215 |
Q |
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| T |
24852632 |
atccagctccaagacctcaatttcctctgcacctgcttctcatcttgatacaacctggtatctagattttggtgcttcacatcatctcacatccattcag |
24852533 |
T |
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| Q |
216 |
aaaaacctagataatggccaagaacaagtcataatcggaaacgttcatggtatgccaattctctctttaggtcacttcacaattttttctt |
306 |
Q |
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| T |
24852532 |
aaaaacctagataatggccaagaacaagtcataatgggaaatggtcatggtatgccaattctttctttaggtcactacacaattttttctt |
24852442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 59 - 142
Target Start/End: Complemental strand, 24848256 - 24848173
Alignment:
| Q |
59 |
atgatgctactcgttttcggtatctttttgatcataattctaatggttaatttgctcatccagctccaagacctcaatttcctc |
142 |
Q |
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| T |
24848256 |
atgatgctactcgttctcgatatctatttgataaaactgctaatggttaatttggtcatccagctccaaaatctcaatttcctc |
24848173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 287
Target Start/End: Complemental strand, 24851200 - 24851138
Alignment:
| Q |
225 |
gataatggccaagaacaagtcataatcggaaacgttcatggtatgccaattctctctttaggt |
287 |
Q |
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| T |
24851200 |
gataatggccaagaacaagtcataatgggaaatggtcaaggtatgccaattccttctttaggt |
24851138 |
T |
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