View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_high_11 (Length: 628)
Name: NF19675_high_11
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 20 - 624
Target Start/End: Original strand, 14192029 - 14192634
Alignment:
| Q |
20 |
gcggtatgatagttagagaatgcagagtgggaagataaacgaaatttgttctgtttattgcacaccctttctcttctaattctaaattctaactcaccac |
119 |
Q |
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| T |
14192029 |
gcggtatgatagttagagaatgcagagtgggaagataaacgaaatttgttctgtttattgcacaccctttctgttctaattctaaattctaactcaccac |
14192128 |
T |
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| Q |
120 |
atatttttt-ctttgtttgaaagatggcagtcatccctaacaggcaagcagcgttggagtctagactttacgaagaagttcatccatgcagcatttgcag |
218 |
Q |
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| T |
14192129 |
atatttttttctttgtttgaaagatggcaattatcccttacatgcaagcagtgttggagtctagactttacgaagaagttcatccatgcagcatttgcag |
14192228 |
T |
|
| Q |
219 |
ggttccnnnnnnncttcgagacctaaaaaaggacgcttacacgccaaagcctatctttatagggttcttacccaggggagaaacgagctaccaccaagtc |
318 |
Q |
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| T |
14192229 |
ggttccaaacaaacttcgagacctaaaagaggacgcttacacgccaaagtctatctttataggactcttacccaggggagaaacgaactaccgccaagtc |
14192328 |
T |
|
| Q |
319 |
caattgatggtaggcaataaatggcaatacatggacaggtttctgcgtcaagaaaaccagcagcatgaaccagaactattcatgacaatgttaagggcat |
418 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||| ||| ||||| | |||| |||| |||||| |||| |
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| T |
14192329 |
caattgatggtaggcattaaatggcaatacatgaacaggtttctgcttcaagaaaaccagcagaatgtaccaggaacattcgacacaaggttaagtgcat |
14192428 |
T |
|
| Q |
419 |
gtaacgtagatattcccatatttgaaatagacacccgcgcaagctatgatgctagcatcttaggttcagaattaactgcagatgttatcgggagaacaat |
518 |
Q |
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||| || |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
14192429 |
gtagcgaagatattcccatatttgaaatagacatccgcgcaagctatgatggtagcatcttaggttcagaattaactacagatgttatcgggagaaaaat |
14192528 |
T |
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| Q |
519 |
gatattggatggttgttttctgttacagtttctcagtaaacttaatcagccagcaatagatgccgaagacccaatatttgaaaccagggaaaagatctgt |
618 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |||| | || ||| |||||||| || ||||||||||||||||||||||||||||||| ||| |
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| T |
14192529 |
gatattggatggttgttttctgttacagcttctcagtagacttgaacacccaacaatagatccccaagacccaatatttgaaaccagggaaaagatgtgt |
14192628 |
T |
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| Q |
619 |
gctgct |
624 |
Q |
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|||||| |
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| T |
14192629 |
gctgct |
14192634 |
T |
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