View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19675_high_15 (Length: 520)

Name: NF19675_high_15
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19675_high_15
NF19675_high_15
[»] chr2 (7 HSPs)
chr2 (7-317)||(16919864-16920174)
chr2 (356-504)||(16919680-16919825)
chr2 (7-88)||(7429864-7429945)
chr2 (379-423)||(3932710-3932754)
chr2 (7-67)||(44142298-44142358)
chr2 (17-109)||(44913374-44913466)
chr2 (33-109)||(44919386-44919462)
[»] chr6 (7 HSPs)
chr6 (18-170)||(2742739-2742891)
chr6 (7-146)||(287469-287608)
chr6 (35-103)||(21379342-21379410)
chr6 (39-85)||(29144396-29144442)
chr6 (7-102)||(21375222-21375317)
chr6 (35-81)||(34259155-34259201)
chr6 (35-81)||(34264520-34264566)
[»] chr5 (10 HSPs)
chr5 (36-88)||(27174371-27174423)
chr5 (35-88)||(42782293-42782346)
chr5 (18-88)||(32642041-32642111)
chr5 (7-73)||(42835396-42835462)
chr5 (7-88)||(9052385-9052466)
chr5 (35-109)||(42797142-42797216)
chr5 (35-109)||(16487605-16487679)
chr5 (35-101)||(24654592-24654658)
chr5 (35-141)||(42841485-42841591)
chr5 (55-132)||(39725460-39725537)
[»] chr7 (4 HSPs)
chr7 (379-423)||(44216428-44216472)
chr7 (39-133)||(5441486-5441580)
chr7 (39-133)||(5450496-5450590)
chr7 (40-88)||(42445433-42445481)
[»] chr3 (1 HSPs)
chr3 (9-88)||(9704362-9704441)
[»] chr1 (2 HSPs)
chr1 (16-133)||(344207-344324)
chr1 (35-105)||(51875569-51875639)
[»] scaffold0054 (1 HSPs)
scaffold0054 (35-79)||(34362-34406)


Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 7 - 317
Target Start/End: Complemental strand, 16920174 - 16919864
Alignment:
Q  7 tgaaatgaaggttttcaaacaaaaaggcccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaag 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  16920174 tgaaatgaaggttttcaaacaaaaaggcccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaatgttgaaaggacagagaagacaag 16920075  T
Q  107 atcttcaggtatattgttgctaaccttaacatttgtggcagacacgaatttcttcatctccaaaagctgaaataccaattcaaacnnnnnnnntatcaag 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||    
T  16920074 atcttcaggtatattgttgctaaccttaacatttgtggcagacacgaatttcttcatctccaaaagctgaaataccaattcaaacaaaaaaaatatcaag 16919975  T
Q  207 caaaattcatttgtatcatgactataaagtggaataaattacacgaaattgaggaattctnnnnnnnttcacaaaatttaaaacataaccatttcaatca 306  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  16919974 caaaattcctttgtatcatgactataaagtggaataaattacacgaaattgaggaattctaaaaaaattcacaaaatttaaaacataaccatttcaatca 16919875  T
Q  307 atttatttgcc 317  Q
    |||||||||||    
T  16919874 atttatttgcc 16919864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 356 - 504
Target Start/End: Complemental strand, 16919825 - 16919680
Alignment:
Q  356 tcaattcagaacacgcagatacaaaattataaacccaaattcattataaatcaacttaaaatcttagcatctttgccaaataaaattttgtgggttatga 455  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  16919825 tcaattcagaacacgcagatacaaaattataaatccaaattcattataaatcaacttaaattcttagcatctttgccaaataaaattttgtgggttatga 16919726  T
Q  456 agctaatatatcaaatggcaaaatttaacaagaacagggatgagaaaca 504  Q
    |||||||||||||||||||||||||||||   |||||||||||||||||    
T  16919725 agctaatatatcaaatggcaaaatttaac---aacagggatgagaaaca 16919680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 7429864 - 7429945
Alignment:
Q  7 tgaaatgaaggttttcaaacaaaaaggcccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttga 88  Q
    |||||||| ||| || ||| || | |||||||||||| | |||||||||||||||||||||||||||||  || ||||||||    
T  7429864 tgaaatgagggtcttgaaataagatggcccatgatttgcatacgcatccaaatcgcttcaaagattttattggcaattttga 7429945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 423
Target Start/End: Original strand, 3932710 - 3932754
Alignment:
Q  379 aaattataaacccaaattcattataaatcaacttaaaatcttagc 423  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||    
T  3932710 aaattatatacccaaattcattctaaatcaacttaaaatcttagc 3932754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 44142298 - 44142358
Alignment:
Q  7 tgaaatgaaggttttcaaacaaaaaggcccatgatttacgtacgcatccaaatcgcttcaa 67  Q
    ||||||||  |||||||||||| | || ||||||||| ||||||||||||||  |||||||    
T  44142298 tgaaatgagagttttcaaacaagatggaccatgatttgcgtacgcatccaaaaagcttcaa 44142358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 44913374 - 44913466
Alignment:
Q  17 gttttcaaacaaaaaggcccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatc 109  Q
    ||||||||| || || | ||||| ||||| ||||||||||||||| || |||||||||| ||  | |||||| || | |||||| ||||||||    
T  44913374 gttttcaaataagaaagtccatggtttacatacgcatccaaatcgttttaaagattttaaagaaagttttgacagaatagagaatacaagatc 44913466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 44919386 - 44919462
Alignment:
Q  33 gcccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatc 109  Q
    ||||||||||||||||| ||| ||||| |||| |||||||||| ||| | |||||| || | ||||||  |||||||    
T  44919386 gcccatgatttacgtacacattcaaatggcttaaaagattttaaaggaagttttgacagaatagagaatgcaagatc 44919462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 2742739 - 2742891
Alignment:
Q  18 ttttcaaacaaaaaggcccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatcttcaggta 117  Q
    ||||||||||| | | |||||||||||| |||||||||||||||||| |||||||||||||| |||||| | |||| ||||| | |||||||||| | ||    
T  2742739 ttttcaaacaagaggacccatgatttacatacgcatccaaatcgctttaaagattttagaggcaattttaacaggatagagagggcaagatcttcggata 2742838  T
Q  118 tattgttgctaaccttaacatttgtggcagacacgaatttcttcatctccaaa 170  Q
    |||  ||||||||||| |||||| | |||  ||| | ||||||||||| ||||    
T  2742839 tatgattgctaacctttacatttatagcacccacaattttcttcatcttcaaa 2742891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 287469 - 287608
Alignment:
Q  7 tgaaatgaaggttttcaaacaaaaaggcccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaag 106  Q
    |||| ||||| ||||||||||| |  | ||||||||||| ||| ||||||||||| || |||||||||||||| |||||||||| || ||||||||  |     
T  287469 tgaagtgaagattttcaaacaagagagtccatgatttacatacacatccaaatcgttttaaagattttagaggcaattttgaaaagatagagaagatcaa 287568  T
Q  107 atcttcaggtatattgttgctaaccttaacatttgtggca 146  Q
    |||||| | ||||| ||  |||| ||||| ||||||||||    
T  287569 atcttctgatatatggtcactaaacttaagatttgtggca 287608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 21379342 - 21379410
Alignment:
Q  35 ccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagac 103  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||| || || || | |||||||||    
T  21379342 ccatgatttacggacgcatccaaatcgcttcaaagatttaagaggtaacttcgatagaatagagaagac 21379410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 29144442 - 29144396
Alignment:
Q  39 gatttacgtacgcatccaaatcgcttcaaagattttagaggtaattt 85  Q
    |||||||| |||||||||||||||||||||||||| ||||| |||||    
T  29144442 gatttacgaacgcatccaaatcgcttcaaagatttaagaggcaattt 29144396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 21375222 - 21375317
Alignment:
Q  7 tgaaatgaaggttttcaaacaaaaaggcccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaaga 102  Q
    |||||| || ||||||||| || | || ||||||||||   ||||||||||||| |||||||||||| |||| |||||| || || | ||||||||    
T  21375222 tgaaataaatgttttcaaataagagggaccatgatttatagacgcatccaaatcacttcaaagatttaagagataatttcgatagaatagagaaga 21375317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 34259155 - 34259201
Alignment:
Q  35 ccatgatttacgtacgcatccaaatcgcttcaaagattttagaggta 81  Q
    |||||||||||| ||||||||||||||||| ||||| || |||||||    
T  34259155 ccatgatttacgaacgcatccaaatcgctttaaagacttaagaggta 34259201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 34264520 - 34264566
Alignment:
Q  35 ccatgatttacgtacgcatccaaatcgcttcaaagattttagaggta 81  Q
    |||||||||||| ||||||||||||||||| ||||| || |||||||    
T  34264520 ccatgatttacgaacgcatccaaatcgctttaaagacttaagaggta 34264566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 27174371 - 27174423
Alignment:
Q  36 catgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttga 88  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  27174371 catgatttgcgtacgcatccaaatcgcttcaaagatttcagaggtaattttga 27174423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 42782346 - 42782293
Alignment:
Q  35 ccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttga 88  Q
    ||||||||||||||||||||||||||||||||||||||| |  |||||||||||    
T  42782346 ccatgatttacgtacgcatccaaatcgcttcaaagatttaatcggtaattttga 42782293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 32642111 - 32642041
Alignment:
Q  18 ttttcaaacaaaaaggcccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttga 88  Q
    |||||||||||||| | |||||||||||||||  || ||||| ||| ||||||||| ||||||||||||||    
T  32642111 ttttcaaacaaaaatgaccatgatttacgtacatattcaaattgctacaaagatttaagaggtaattttga 32642041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 42835396 - 42835462
Alignment:
Q  7 tgaaatgaaggttttcaaacaaaaaggcccatgatttacgtacgcatccaaatcgcttcaaagattt 73  Q
    |||||| ||| || |||||||||| || |||||||||  ||||||||||||||||||||||||||||    
T  42835396 tgaaataaagattatcaaacaaaagggaccatgatttgtgtacgcatccaaatcgcttcaaagattt 42835462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 9052466 - 9052385
Alignment:
Q  7 tgaaatgaaggttttcaaacaaaaaggcccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttga 88  Q
    |||||||  |||| |||||||||| ||  |||||||| |||||||||||||||  ||| |||||||||| ||||||||||||    
T  9052466 tgaaatgttggttctcaaacaaaagggttcatgatttgcgtacgcatccaaatttctttaaagattttacaggtaattttga 9052385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 42797142 - 42797216
Alignment:
Q  35 ccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatc 109  Q
    |||||||||| ||||  ||| |||||||||||||||||| | |||||||||||| || | |||||||| ||||||    
T  42797142 ccatgatttaagtacatatcaaaatcgcttcaaagatttaataggtaattttgagagaatagagaagaaaagatc 42797216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 16487605 - 16487679
Alignment:
Q  35 ccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatc 109  Q
    |||||||||  ||||||||||||| | |||||||||||| | ||||| |||||| || | |||||||| ||||||    
T  16487605 ccatgatttgtgtacgcatccaaacctcttcaaagatttgataggtagttttgagagaagagagaagaaaagatc 16487679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 24654658 - 24654592
Alignment:
Q  35 ccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaag 101  Q
    ||||||||||||||| || ||||| ||||| || ||||||| ||||||||| ||||| | |||||||    
T  24654658 ccatgatttacgtacacaaccaaaacgcttgaatgattttataggtaatttggaaagaatagagaag 24654592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 141
Target Start/End: Original strand, 42841485 - 42841591
Alignment:
Q  35 ccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatcttcaggtatattgttgctaacctta 134  Q
    |||||||||| |||||||| ||||| ||||||||||||  | ||| | |||||| || | | ||||||||| ||| || ||||| |  |||||||||| |    
T  42841485 ccatgatttatgtacgcattcaaatggcttcaaagattcaatagggagttttgagagaatatagaagacaatatcatcgggtatgtgattgctaacctga 42841584  T
Q  135 acatttg 141  Q
    |||||||    
T  42841585 acatttg 42841591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 39725460 - 39725537
Alignment:
Q  55 caaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatcttcaggtatattgttgctaacct 132  Q
    ||||||||||||||||||| | ||| | |||||| || | ||||||||||| ||| ||||||| ||  ||||||||||    
T  39725460 caaatcgcttcaaagatttgaaaggaagttttgacagaatagagaagacaatatcatcaggtacatgattgctaacct 39725537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 423
Target Start/End: Complemental strand, 44216472 - 44216428
Alignment:
Q  379 aaattataaacccaaattcattataaatcaacttaaaatcttagc 423  Q
    |||||||||||||||||||||| |||||| |||||||||||||||    
T  44216472 aaattataaacccaaattcattctaaatccacttaaaatcttagc 44216428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 5441580 - 5441486
Alignment:
Q  39 gatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatcttcaggtatattgttgctaacctt 133  Q
    ||||| |||||||||||||| || ||||| ||||| | ||| |||||||| |  | ||||||||||||||| | ||||||||  || ||||||||    
T  5441580 gatttgcgtacgcatccaaaacgattcaatgatttcacaggcaattttgacaaaatagagaagacaagatcattaggtatatcatttctaacctt 5441486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 5450590 - 5450496
Alignment:
Q  39 gatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatcttcaggtatattgttgctaacctt 133  Q
    ||||| |||||||||||||| || ||||| ||||| | ||| |||||||| |  | ||||||||||||||| | ||||||||  || ||||||||    
T  5450590 gatttgcgtacgcatccaaaacgattcaatgatttcacaggcaattttgacaaaatagagaagacaagatcattaggtatatcatttctaacctt 5450496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 42445481 - 42445433
Alignment:
Q  40 atttacgtacgcatccaaatcgcttcaaagattttagaggtaattttga 88  Q
    ||||||| || ||| |||||||||| |||||||| ||||||||||||||    
T  42445481 atttacgaacacattcaaatcgcttaaaagatttaagaggtaattttga 42445433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 9704441 - 9704362
Alignment:
Q  9 aaatgaaggttttcaaacaaaaaggcccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttga 88  Q
    |||||| |||||||||| ||||  | |||||||||||| || |||| |||||| || |||||||| ||||||||||||||    
T  9704441 aaatgatggttttcaaataaaagtgtccatgatttacgaacacatctaaatcgttttaaagatttcagaggtaattttga 9704362  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 344324 - 344207
Alignment:
Q  16 ggttttcaaacaaaaaggcccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatcttcagg 115  Q
    |||||||||| |||| |||  | ||||||| |||||||||||| || |||||||| || | ||||||||| || || ||| |||||| |||||| | |||    
T  344324 ggttttcaaataaaagggcataagatttacttacgcatccaaaacgtttcaaagacttcaaaggtaatttagatagaacaaagaagataagatcattagg 344225  T
Q  116 tatattgttgctaacctt 133  Q
    |||||  ||| |||||||    
T  344224 tatatgtttgttaacctt 344207  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 51875569 - 51875639
Alignment:
Q  35 ccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaa 105  Q
    ||||||||||| ||| |||||||||||||| |||||||  ||||||| |||||| || |  ||||||||||    
T  51875569 ccatgatttacatacacatccaaatcgctttaaagattgaagaggtagttttgatagaatcgagaagacaa 51875639  T

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Target: scaffold0054 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 34362 - 34406
Alignment:
Q  35 ccatgatttacgtacgcatccaaatcgcttcaaagattttagagg 79  Q
    |||||||||||| ||||||| |||||| ||||||||||| |||||    
T  34362 ccatgatttacgaacgcatcgaaatcggttcaaagatttaagagg 34406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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