View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19675_high_26 (Length: 424)

Name: NF19675_high_26
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19675_high_26
NF19675_high_26
[»] chr4 (28 HSPs)
chr4 (87-238)||(53497929-53498078)
chr4 (237-334)||(53497799-53497898)
chr4 (351-418)||(7292784-7292851)
chr4 (351-418)||(53496900-53496967)
chr4 (351-417)||(23377980-23378046)
chr4 (351-418)||(4249200-4249267)
chr4 (351-418)||(37109337-37109404)
chr4 (351-418)||(38869791-38869858)
chr4 (360-418)||(7949449-7949507)
chr4 (351-416)||(2622381-2622446)
chr4 (364-417)||(5450117-5450170)
chr4 (360-416)||(37274454-37274510)
chr4 (351-418)||(13265094-13265161)
chr4 (363-418)||(30938217-30938272)
chr4 (363-414)||(39509097-39509148)
chr4 (360-418)||(19531997-19532055)
chr4 (361-414)||(2185028-2185081)
chr4 (363-400)||(9936959-9936996)
chr4 (361-418)||(13015450-13015507)
chr4 (364-413)||(46329192-46329241)
chr4 (361-418)||(49576890-49576947)
chr4 (361-418)||(51948503-51948560)
chr4 (349-418)||(52254388-52254457)
chr4 (362-418)||(8714702-8714758)
chr4 (363-415)||(25414213-25414264)
chr4 (363-415)||(32992638-32992690)
chr4 (363-415)||(46295123-46295175)
chr4 (382-418)||(51250539-51250575)
[»] chr3 (39 HSPs)
chr3 (360-418)||(46518651-46518709)
chr3 (360-418)||(4222164-4222222)
chr3 (360-417)||(27259185-27259242)
chr3 (358-418)||(36720404-36720464)
chr3 (351-418)||(14339633-14339700)
chr3 (351-418)||(37788451-37788518)
chr3 (360-419)||(47860778-47860836)
chr3 (360-417)||(31788965-31789022)
chr3 (362-418)||(30311329-30311385)
chr3 (351-418)||(27093347-27093414)
chr3 (361-416)||(31520601-31520656)
chr3 (364-415)||(44069784-44069835)
chr3 (351-417)||(28703390-28703456)
chr3 (371-416)||(8501579-8501624)
chr3 (361-414)||(26481954-26482007)
chr3 (361-418)||(51903874-51903931)
chr3 (358-418)||(2667885-2667945)
chr3 (358-418)||(8075120-8075180)
chr3 (360-416)||(10445134-10445190)
chr3 (358-418)||(32651431-32651491)
chr3 (351-418)||(15048047-15048114)
chr3 (361-400)||(30715783-30715822)
chr3 (360-415)||(31608519-31608574)
chr3 (360-411)||(39253727-39253778)
chr3 (351-414)||(44743841-44743904)
chr3 (363-418)||(47454615-47454670)
chr3 (351-405)||(3427539-3427593)
chr3 (361-399)||(4642116-4642154)
chr3 (360-418)||(29563923-29563981)
chr3 (361-418)||(4844507-4844564)
chr3 (361-418)||(4870203-4870260)
chr3 (361-418)||(14186671-14186727)
chr3 (363-400)||(17108896-17108933)
chr3 (381-418)||(28928895-28928932)
chr3 (351-400)||(40777054-40777102)
chr3 (382-418)||(7975441-7975477)
chr3 (358-414)||(30510192-30510248)
chr3 (360-400)||(36010783-36010823)
chr3 (363-415)||(54990728-54990780)
[»] chr1 (36 HSPs)
chr1 (351-418)||(8177168-8177235)
chr1 (360-418)||(51703802-51703860)
chr1 (362-418)||(15786317-15786373)
chr1 (351-418)||(9165181-9165248)
chr1 (363-418)||(19528325-19528380)
chr1 (351-418)||(33700759-33700826)
chr1 (351-418)||(2799885-2799952)
chr1 (351-402)||(3799945-3799996)
chr1 (360-418)||(6650618-6650676)
chr1 (377-418)||(44046160-44046201)
chr1 (363-415)||(952537-952589)
chr1 (360-400)||(1600287-1600327)
chr1 (363-415)||(4824997-4825049)
chr1 (361-417)||(9964462-9964518)
chr1 (385-417)||(31049637-31049669)
chr1 (370-418)||(47720853-47720901)
chr1 (370-418)||(47727845-47727893)
chr1 (370-418)||(47753737-47753785)
chr1 (351-418)||(10526846-10526913)
chr1 (366-417)||(20498344-20498395)
chr1 (351-418)||(52116767-52116834)
chr1 (358-412)||(20203894-20203948)
chr1 (360-418)||(21547475-21547533)
chr1 (360-418)||(27476766-27476824)
chr1 (361-415)||(30420336-30420390)
chr1 (360-418)||(36371493-36371551)
chr1 (360-418)||(52336769-52336827)
chr1 (360-417)||(4566572-4566629)
chr1 (363-412)||(17297013-17297062)
chr1 (361-398)||(51281394-51281431)
chr1 (361-418)||(51814517-51814574)
chr1 (360-400)||(3265965-3266005)
chr1 (358-418)||(6122817-6122877)
chr1 (361-417)||(12587294-12587350)
chr1 (363-415)||(39714777-39714828)
chr1 (358-418)||(44961788-44961848)
[»] chr5 (19 HSPs)
chr5 (360-418)||(37258361-37258419)
chr5 (361-418)||(29692382-29692439)
chr5 (351-399)||(18437127-18437175)
chr5 (351-418)||(21549123-21549190)
chr5 (360-418)||(43442219-43442277)
chr5 (365-418)||(87423-87476)
chr5 (351-416)||(14285186-14285251)
chr5 (361-418)||(14495801-14495858)
chr5 (358-419)||(17028257-17028318)
chr5 (363-414)||(84851-84902)
chr5 (351-418)||(29075804-29075871)
chr5 (351-418)||(34984829-34984896)
chr5 (360-418)||(16773830-16773888)
chr5 (360-418)||(25627080-25627138)
chr5 (361-418)||(22020858-22020915)
chr5 (360-417)||(25979194-25979251)
chr5 (382-418)||(16457833-16457869)
chr5 (362-418)||(17761352-17761408)
chr5 (382-418)||(30883215-30883251)
[»] chr6 (13 HSPs)
chr6 (351-418)||(12188289-12188356)
chr6 (365-418)||(10338174-10338227)
chr6 (360-418)||(6776602-6776660)
chr6 (361-418)||(33549127-33549184)
chr6 (361-418)||(34786450-34786507)
chr6 (360-424)||(14278106-14278170)
chr6 (351-399)||(16535226-16535274)
chr6 (359-415)||(20863401-20863457)
chr6 (363-418)||(24641188-24641243)
chr6 (358-412)||(20213070-20213124)
chr6 (358-412)||(22107093-22107147)
chr6 (368-418)||(31622994-31623044)
chr6 (361-418)||(32201881-32201938)
[»] scaffold0006 (2 HSPs)
scaffold0006 (351-416)||(18324-18389)
scaffold0006 (362-414)||(222536-222588)
[»] scaffold1367 (1 HSPs)
scaffold1367 (358-418)||(833-893)
[»] chr8 (25 HSPs)
chr8 (351-418)||(6536543-6536610)
chr8 (361-417)||(34628666-34628722)
chr8 (351-418)||(30483870-30483937)
chr8 (358-417)||(43594311-43594370)
chr8 (360-418)||(35690059-35690117)
chr8 (358-416)||(44780107-44780165)
chr8 (361-418)||(968385-968442)
chr8 (361-418)||(3624603-3624660)
chr8 (358-418)||(19703480-19703540)
chr8 (359-399)||(31408116-31408156)
chr8 (362-417)||(6569768-6569823)
chr8 (351-418)||(12988451-12988518)
chr8 (363-418)||(16852363-16852418)
chr8 (351-418)||(18540321-18540388)
chr8 (359-414)||(27871695-27871750)
chr8 (360-418)||(23361644-23361702)
chr8 (351-417)||(33017238-33017304)
chr8 (373-418)||(2203515-2203560)
chr8 (351-400)||(13129709-13129758)
chr8 (363-420)||(40136961-40137017)
chr8 (363-415)||(6530833-6530884)
chr8 (364-412)||(11793520-11793568)
chr8 (358-418)||(11819799-11819859)
chr8 (371-415)||(26688891-26688935)
chr8 (358-418)||(27750753-27750813)
[»] chr7 (26 HSPs)
chr7 (351-418)||(26459396-26459463)
chr7 (360-418)||(43215207-43215265)
chr7 (351-416)||(17040998-17041063)
chr7 (358-418)||(18363719-18363779)
chr7 (360-411)||(15137583-15137634)
chr7 (351-418)||(43590930-43590997)
chr7 (360-418)||(41519259-41519317)
chr7 (373-418)||(21854571-21854616)
chr7 (362-415)||(29385740-29385793)
chr7 (363-415)||(5579232-5579284)
chr7 (358-418)||(9608622-9608682)
chr7 (358-418)||(9836194-9836254)
chr7 (362-417)||(5716629-5716684)
chr7 (363-418)||(22760886-22760941)
chr7 (379-418)||(25021349-25021388)
chr7 (363-418)||(37085547-37085602)
chr7 (351-418)||(39631867-39631934)
chr7 (365-412)||(44628183-44628230)
chr7 (360-418)||(7744107-7744165)
chr7 (359-417)||(23552142-23552200)
chr7 (363-409)||(29916806-29916852)
chr7 (360-418)||(38851279-38851337)
chr7 (360-405)||(9183186-9183231)
chr7 (360-413)||(9871281-9871334)
chr7 (385-418)||(48771961-48771994)
chr7 (362-418)||(30442511-30442567)
[»] scaffold0299 (1 HSPs)
scaffold0299 (360-418)||(11551-11609)
[»] scaffold0194 (1 HSPs)
scaffold0194 (361-418)||(13042-13099)
[»] chr2 (24 HSPs)
chr2 (362-418)||(42327392-42327448)
chr2 (351-418)||(19322791-19322858)
chr2 (360-418)||(11251110-11251168)
chr2 (360-418)||(16918573-16918631)
chr2 (361-418)||(42602577-42602634)
chr2 (361-417)||(4262298-4262354)
chr2 (365-417)||(10449046-10449098)
chr2 (382-418)||(30410566-30410602)
chr2 (351-418)||(42922437-42922505)
chr2 (363-418)||(29503294-29503349)
chr2 (351-418)||(34041574-34041641)
chr2 (363-418)||(37480098-37480153)
chr2 (351-402)||(45026782-45026833)
chr2 (351-417)||(727626-727692)
chr2 (359-417)||(6859306-6859364)
chr2 (349-415)||(8192464-8192529)
chr2 (360-417)||(11062384-11062441)
chr2 (360-417)||(13803519-13803576)
chr2 (353-418)||(23052511-23052576)
chr2 (361-410)||(23230601-23230650)
chr2 (366-415)||(40591202-40591250)
chr2 (363-415)||(12517751-12517803)
chr2 (363-415)||(26482119-26482170)
chr2 (363-415)||(31681075-31681127)
[»] scaffold0258 (1 HSPs)
scaffold0258 (361-418)||(15319-15376)
[»] scaffold0238 (1 HSPs)
scaffold0238 (360-416)||(5218-5274)
[»] scaffold0291 (1 HSPs)
scaffold0291 (363-418)||(2468-2523)
[»] scaffold0172 (1 HSPs)
scaffold0172 (363-418)||(15775-15830)
[»] scaffold0180 (1 HSPs)
scaffold0180 (360-418)||(19957-20015)
[»] scaffold0070 (1 HSPs)
scaffold0070 (362-418)||(42517-42573)
[»] scaffold0063 (1 HSPs)
scaffold0063 (382-418)||(35406-35442)


Alignment Details
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 87 - 238
Target Start/End: Complemental strand, 53498078 - 53497929
Alignment:
Q  87 cttagttagtggatggataaggtcacggtcaccgtcgtcacctttgaataatacttggaccctatcccccctggcaagaggcaccagctagctgtaaaat 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||    
T  53498078 cttagttagtggatggataaggtcacggtcaccgtcgtcacctttgaataatacctggaccctatcccc--tggcaagaggcaccagctagctgtaaaat 53497981  T
Q  187 tttgctttttcacttgttagaagagtatatccaaatgcttctggattgatac 238  Q
    ||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  53497980 tttactttttcacctgttagaagagtatatccaaatgcttctggattgatac 53497929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 237 - 334
Target Start/End: Complemental strand, 53497898 - 53497799
Alignment:
Q  237 acaaaaattgaaacatagtttggaaattcgaactttgtttttt--attgaaaatcatggatttgtcattttaaaaattcaaaaataacattagtcataaa 334  Q
    ||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53497898 acaaaaattgacacatagtttggaaattcgaactttgttttttttattgaaaatcatggatttgtcattttaaaaattcaaaaataacattagtcataaa 53497799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 351 - 418
Target Start/End: Original strand, 7292784 - 7292851
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||| |||||||||||| ||||||| |||||||||||||||||||||| || | ||||||||||||    
T  7292784 attggcactagagagaatcgaacctgagactttgaggaggagcacactcccaggttccaagccaatac 7292851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 351 - 418
Target Start/End: Complemental strand, 53496967 - 53496900
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||| || |||||| |||||||    
T  53496967 attggctccagagagaatcaaatctgagactttgaggaggagcacactcccaggtcccaaaccaatac 53496900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 417
Target Start/End: Complemental strand, 23378046 - 23377980
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaata 417  Q
    |||||| |||||||||||| ||||||| || ||||||||||||||||||| || |||||||||||||    
T  23378046 attggcactagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaata 23377980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 418
Target Start/End: Complemental strand, 4249267 - 4249200
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||| | |||||||||||||||||| || ||||||||||||||||||| | |||||||||| ||||    
T  4249267 attggcaccagagagaatcaaacctgagaccttgaggaggagcacactccaaaatcccaagcctatac 4249200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 418
Target Start/End: Original strand, 37109337 - 37109404
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||| | |||||||||| ||||||| || ||||||||||||||||||| || ||||||||||||||    
T  37109337 attggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaatac 37109404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 418
Target Start/End: Complemental strand, 38869858 - 38869791
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||| | |||| ||||| ||||||| || ||||||||||||||||||| |||||||||||||||||    
T  38869858 attggcaccagagggaatcgaacctgagaccttgaggaggagcacactcccagatcccaagccaatac 38869791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 360 - 418
Target Start/End: Original strand, 7949449 - 7949507
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||| ||||||| || ||||||||||||||||||| || ||||||||||||||    
T  7949449 agagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaatac 7949507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 416
Target Start/End: Original strand, 2622381 - 2622446
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaat 416  Q
    |||||| | |||||||||| ||||||| || | ||||||||||||||||| || ||||||||||||    
T  2622381 attggcaccagagagaatcgaacctgagacatggaggaggagcacactcccaggtcccaagccaat 2622446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 5450170 - 5450117
Alignment:
Q  364 agaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaata 417  Q
    |||||| || ||||||| ||||||||||||||||||| |||| |||||||||||    
T  5450170 agaatcgaatctgaaaccttgaggaggagcacactcccagattccaagccaata 5450117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 37274454 - 37274510
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaat 416  Q
    |||||||||| ||||| | || ||||||||||||||||||| || ||||||||||||    
T  37274454 agagagaatcgaacctaagaccttgaggaggagcacactcccaggtcccaagccaat 37274510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 418
Target Start/End: Original strand, 13265094 - 13265161
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||| |||||||||| || |||||||  | |||||||||||| ||| || ||||||||||||||    
T  13265094 attggctcaagagagaatcgaatctgaaaccataaggaggagcacattcccaggtcccaagccaatac 13265161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 418
Target Start/End: Original strand, 30938217 - 30938272
Alignment:
Q  363 gagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||| ||||||| || | ||||||||||||||||| ||||||||| |||||||    
T  30938217 gagaatcgaacctgagacctcgaggaggagcacactccaagatcccaaaccaatac 30938272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 414
Target Start/End: Complemental strand, 39509148 - 39509097
Alignment:
Q  363 gagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagcca 414  Q
    ||||||| ||||||| || | ||||||||||||||||| |||||||||||||    
T  39509148 gagaatcgaacctgagacctcgaggaggagcacactcccagatcccaagcca 39509097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 418
Target Start/End: Original strand, 19531997 - 19532055
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||| |||||||||  || ||||||||||| ||||||  ||||||||||||||    
T  19531997 agagagaatcgaacctgaaaacttaaggaggagcacgctcctatgtcccaagccaatac 19532055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 414
Target Start/End: Original strand, 2185028 - 2185081
Alignment:
Q  361 gagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagcca 414  Q
    ||||||||| ||||||| |||||||| ||||||||||||| || | ||||||||    
T  2185028 gagagaatcgaacctgagactttgagaaggagcacactcccaggttccaagcca 2185081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 400
Target Start/End: Original strand, 9936959 - 9936996
Alignment:
Q  363 gagaatcaaacctgaaactttgaggaggagcacactcc 400  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  9936959 gagaatcgaacctgaaacttcgaggaggagcacactcc 9936996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 418
Target Start/End: Complemental strand, 13015507 - 13015450
Alignment:
Q  361 gagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||||| ||| ||| |||| ||||||||||||||||| |  ||||||||||||||    
T  13015507 gagagaatcgaacatgagacttcgaggaggagcacactcccaagtcccaagccaatac 13015450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 413
Target Start/End: Complemental strand, 46329241 - 46329192
Alignment:
Q  364 agaatcaaacctgaaactttgaggaggagcacactcctagatcccaagcc 413  Q
    |||||| ||||||| || ||||||||||||||||||| || |||||||||    
T  46329241 agaatcgaacctgataccttgaggaggagcacactcccaggtcccaagcc 46329192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 418
Target Start/End: Original strand, 49576890 - 49576947
Alignment:
Q  361 gagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||||| ||||||| || ||||||||||||||||||| |  ||| ||||||||||    
T  49576890 gagagaatcgaacctgagaccttgaggaggagcacactcccaagtccaaagccaatac 49576947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 418
Target Start/End: Complemental strand, 51948560 - 51948503
Alignment:
Q  361 gagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||||  ||||||| || | ||||||| |||||||||||||||||||| ||||||    
T  51948560 gagagaattgaacctgagacctcgaggaggggcacactcctagatcccaagtcaatac 51948503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 418
Target Start/End: Original strand, 52254388 - 52254457
Alignment:
Q  349 acattggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||| || ||||||||| |||||||||| |  |||||||||||||||  | |||||||| ||||||    
T  52254388 acattggcactggagagaatctaacctgaaacctcaaggaggagcacactctcatatcccaagtcaatac 52254457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 418
Target Start/End: Complemental strand, 8714758 - 8714702
Alignment:
Q  362 agagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||||||| ||||||| |||||||||| ||| |||  ||||||||| |||||||    
T  8714758 agagaatcaaatctgaaaccttgaggaggaacacgctctcagatcccaaaccaatac 8714702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 415
Target Start/End: Original strand, 25414213 - 25414264
Alignment:
Q  363 gagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaa 415  Q
    ||||||||||||||| ||||||| |||||||||||||| || || ||||||||    
T  25414213 gagaatcaaacctgagactttga-gaggagcacactccaaggtctcaagccaa 25414264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 415
Target Start/End: Complemental strand, 32992690 - 32992638
Alignment:
Q  363 gagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaa 415  Q
    ||||||| ||| ||| || ||||||||||||||||||| || |||||||||||    
T  32992690 gagaatcgaacttgagaccttgaggaggagcacactccaaggtcccaagccaa 32992638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 415
Target Start/End: Complemental strand, 46295175 - 46295123
Alignment:
Q  363 gagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaa 415  Q
    ||||||| ||||||| || ||||||||||||||||||| |  |||||||||||    
T  46295175 gagaatcgaacctgagaccttgaggaggagcacactccaatgtcccaagccaa 46295123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 51250539 - 51250575
Alignment:
Q  382 ttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||| |||||||||||| |||||||||||||||||    
T  51250539 ttgaggcggagcacactcccagatcccaagccaatac 51250575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 360 - 418
Target Start/End: Complemental strand, 46518709 - 46518651
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  46518709 agagagaatcaaacctgaaaccttgaggaggagcacactcccagatcccaagccaatac 46518651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 360 - 418
Target Start/End: Complemental strand, 4222222 - 4222164
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||| ||||| | |||||||||||||||||||||| |||||||||||||||||    
T  4222222 agagagaatcgaacctaagactttgaggaggagcacactcccagatcccaagccaatac 4222164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 360 - 417
Target Start/End: Complemental strand, 27259242 - 27259185
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaata 417  Q
    ||||||||||||||||||||| | ||||||||||||||||| || |||||||||||||    
T  27259242 agagagaatcaaacctgaaacctcgaggaggagcacactcccaggtcccaagccaata 27259185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 358 - 418
Target Start/End: Complemental strand, 36720464 - 36720404
Alignment:
Q  358 ctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||||| |||||||||| | ||||||||||||||||| | |||||||||||||||    
T  36720464 ctagagagaatcgaacctgaaacctcgaggaggagcacactcccatatcccaagccaatac 36720404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 418
Target Start/End: Complemental strand, 14339700 - 14339633
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||| |||| ||||||| ||||||| || ||||||||||||||||||| | |||||||||||||||    
T  14339700 attggcactagggagaatcgaacctgagacattgaggaggagcacactcccaaatcccaagccaatac 14339633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 418
Target Start/End: Original strand, 37788451 - 37788518
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||| |||||||||||| ||||||| || |||||||||||||||||||||| | ||||| ||||||    
T  37788451 attggcactagagagaatcgaacctgagaccttgaggaggagcacactcctaggttccaagtcaatac 37788518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 419
Target Start/End: Complemental strand, 47860836 - 47860778
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaataca 419  Q
    |||||||||| ||| ||| ||||||||||||||||||||||||||||| |||||||||||    
T  47860836 agagagaatcgaac-tgagactttgaggaggagcacactcctagatccaaagccaataca 47860778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 360 - 417
Target Start/End: Original strand, 31788965 - 31789022
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaata 417  Q
    ||||| |||||||||| |||| | ||||||||||||||||| ||||||||||||||||    
T  31788965 agagataatcaaacctaaaacctcgaggaggagcacactcccagatcccaagccaata 31789022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 418
Target Start/End: Complemental strand, 30311385 - 30311329
Alignment:
Q  362 agagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||| ||||||| || ||||||||||||||||||| |||||||||||| ||||    
T  30311385 agagaatcgaacctgagaccttgaggaggagcacactcccagatcccaagcctatac 30311329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 418
Target Start/End: Original strand, 27093347 - 27093414
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||| | |||||||||||||||||| || ||||||||||||||||||| |  | ||||||||||||    
T  27093347 attggcaccagagagaatcaaacctgagaccttgaggaggagcacactcccaagttccaagccaatac 27093414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 31520601 - 31520656
Alignment:
Q  361 gagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaat 416  Q
    ||||||||||||||| | || | ||||||||||||||||| |||||||||||||||    
T  31520601 gagagaatcaaacctaagacctcgaggaggagcacactcccagatcccaagccaat 31520656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 415
Target Start/End: Complemental strand, 44069835 - 44069784
Alignment:
Q  364 agaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaa 415  Q
    |||||||||||||| || ||||||||||||||||||| ||||| ||||||||    
T  44069835 agaatcaaacctgagaccttgaggaggagcacactccaagatctcaagccaa 44069784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 417
Target Start/End: Original strand, 28703390 - 28703456
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaata 417  Q
    |||||| | |||||||||| ||||||| || |||| |||||||||||||| ||||||||||| ||||    
T  28703390 attggcaccagagagaatcgaacctgagaccttgaagaggagcacactcccagatcccaagctaata 28703456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 371 - 416
Target Start/End: Original strand, 8501579 - 8501624
Alignment:
Q  371 aacctgaaactttgaggaggagcacactcctagatcccaagccaat 416  Q
    |||||||||||||||||||||||||||||| ||||| |||| ||||    
T  8501579 aacctgaaactttgaggaggagcacactcccagatctcaagtcaat 8501624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 414
Target Start/End: Complemental strand, 26482007 - 26481954
Alignment:
Q  361 gagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagcca 414  Q
    ||||||||| ||||| |||||||||||||||||||||||  || ||||||||||    
T  26482007 gagagaatcgaacctaaaactttgaggaggagcacactctcaggtcccaagcca 26481954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 418
Target Start/End: Original strand, 51903874 - 51903931
Alignment:
Q  361 gagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||||| ||||||| ||   ||||||||||||||||| |||||||||||||||||    
T  51903874 gagagaatcgaacctgagaccacgaggaggagcacactcccagatcccaagccaatac 51903931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 418
Target Start/End: Complemental strand, 2667945 - 2667885
Alignment:
Q  358 ctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||| |||| ||||||| || | ||||| ||||||||||| |||||||||||||||||    
T  2667945 ctagagataatcgaacctgagacctcgaggaagagcacactcccagatcccaagccaatac 2667885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 418
Target Start/End: Original strand, 8075120 - 8075180
Alignment:
Q  358 ctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||| ||||| |||||||||| ||||||||||||||||||| |  ||||||||| ||||    
T  8075120 ctagagggaatcgaacctgaaaccttgaggaggagcacactcccaagtcccaagcctatac 8075180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 10445134 - 10445190
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaat 416  Q
    |||||||||| ||||||| || | ||||||||||||||||| || ||||||||||||    
T  10445134 agagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaat 10445190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 418
Target Start/End: Original strand, 32651431 - 32651491
Alignment:
Q  358 ctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||||| || |||| |  ||||||||||||||||||| || ||||||||||||||    
T  32651431 ctagagagaatcgaatctgagatcttgaggaggagcacactcccaggtcccaagccaatac 32651491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 418
Target Start/End: Original strand, 15048047 - 15048114
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||| | ||||| |||| ||||||| || ||||||||||||||| ||| |||||||||||| ||||    
T  15048047 attggcaccagagataatcgaacctgagaccttgaggaggagcacattcccagatcccaagcctatac 15048114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 400
Target Start/End: Complemental strand, 30715822 - 30715783
Alignment:
Q  361 gagagaatcaaacctgaaactttgaggaggagcacactcc 400  Q
    ||||||||| |||||||||| |||||||||||||||||||    
T  30715822 gagagaatcgaacctgaaacattgaggaggagcacactcc 30715783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 415
Target Start/End: Original strand, 31608519 - 31608574
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaa 415  Q
    ||||||||||||| |||| || | ||||||||||||||||| ||||| ||||||||    
T  31608519 agagagaatcaaatctgagacctcgaggaggagcacactcccagatctcaagccaa 31608574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 39253778 - 39253727
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaag 411  Q
    |||||||||| ||||||| || |||| |||||||||||||| ||||||||||    
T  39253778 agagagaatcgaacctgagaccttgaagaggagcacactcccagatcccaag 39253727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 44743841 - 44743904
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagcca 414  Q
    |||||| || |||| |||| ||||||| || | ||||||||||||||||| |||||||||||||    
T  44743841 attggcactggagataatcgaacctgagacctcgaggaggagcacactcccagatcccaagcca 44743904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 418
Target Start/End: Original strand, 47454615 - 47454670
Alignment:
Q  363 gagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||| ||||||| || | ||||||||||||||||| ||||| |||||||||||    
T  47454615 gagaatcgaacctgagacctcgaggaggagcacactccaagatctcaagccaatac 47454670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 405
Target Start/End: Original strand, 3427539 - 3427593
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagat 405  Q
    |||||| |||||||||||| || |||| || ||||||||||||||||||| ||||    
T  3427539 attggcactagagagaatcgaatctgagaccttgaggaggagcacactcccagat 3427593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 399
Target Start/End: Original strand, 4642116 - 4642154
Alignment:
Q  361 gagagaatcaaacctgaaactttgaggaggagcacactc 399  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  4642116 gagagaatcaaacatgaaacttttaggaggagcacactc 4642154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 418
Target Start/End: Complemental strand, 29563981 - 29563923
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||| ||||||| |||| |||||| |||||||| | ||||| |||||||||||    
T  29563981 agagagaatcgaacctgagacttcgaggagaagcacacttccagatctcaagccaatac 29563923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 418
Target Start/End: Original strand, 4844507 - 4844564
Alignment:
Q  361 gagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||||| | ||||| || | ||||||||||||||||| |||||||||| ||||||    
T  4844507 gagagaatcgatcctgagacctcgaggaggagcacactcccagatcccaagtcaatac 4844564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 418
Target Start/End: Original strand, 4870203 - 4870260
Alignment:
Q  361 gagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||||| | ||||| || | ||||||||||||||||| |||||||||| ||||||    
T  4870203 gagagaatcgatcctgagacctcgaggaggagcacactcccagatcccaagtcaatac 4870260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 418
Target Start/End: Complemental strand, 14186727 - 14186671
Alignment:
Q  361 gagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||||| ||||||| || ||||||||||||||||||| || ||||||| ||||||    
T  14186727 gagagaatcgaacctgagaccttgaggaggagcacactcc-aggtcccaagacaatac 14186671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 400
Target Start/End: Original strand, 17108896 - 17108933
Alignment:
Q  363 gagaatcaaacctgaaactttgaggaggagcacactcc 400  Q
    ||||||||||||||| || |||||||||||||||||||    
T  17108896 gagaatcaaacctgagaccttgaggaggagcacactcc 17108933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 28928895 - 28928932
Alignment:
Q  381 tttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||||||||||||  |||||||||||||||||    
T  28928895 tttgaggaggagcacactctcagatcccaagccaatac 28928932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 400
Target Start/End: Complemental strand, 40777102 - 40777054
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcc 400  Q
    |||||| |||||||||||||||||||| || |||| ||||||||||||||    
T  40777102 attggcactagagagaatcaaacctgagaccttga-gaggagcacactcc 40777054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 7975477 - 7975441
Alignment:
Q  382 ttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  7975477 ttgaggaggagcacactcccagatcccaagcctatac 7975441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 414
Target Start/End: Original strand, 30510192 - 30510248
Alignment:
Q  358 ctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagcca 414  Q
    |||||||||||| ||||||| || | ||| ||||||| |||||||| ||||||||||    
T  30510192 ctagagagaatcgaacctgagacctcgagaaggagcatactcctaggtcccaagcca 30510248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 36010823 - 36010783
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcc 400  Q
    |||||||||| ||| ||| ||||||||||||||||||||||    
T  36010823 agagagaatcgaacttgagactttgaggaggagcacactcc 36010783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 415
Target Start/End: Complemental strand, 54990780 - 54990728
Alignment:
Q  363 gagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaa 415  Q
    ||||||| ||||||| || |||||||||||||| |||| || |||||||||||    
T  54990780 gagaatcgaacctgagaccttgaggaggagcacgctccaaggtcccaagccaa 54990728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 351 - 418
Target Start/End: Original strand, 8177168 - 8177235
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||| | |||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||    
T  8177168 attggcaccagagagaatcgaacctgaaaccttgaggaggagcacactcccagatcccaagccaatac 8177235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 360 - 418
Target Start/End: Complemental strand, 51703860 - 51703802
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||    
T  51703860 agagagaatcgaacctgaaactttgaggaggagcacactcccagattccaagccaatac 51703802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 362 - 418
Target Start/End: Original strand, 15786317 - 15786373
Alignment:
Q  362 agagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||| ||||||| || ||||||||||||||||||| |||||||||||||||||    
T  15786317 agagaatcgaacctgagaccttgaggaggagcacactcccagatcccaagccaatac 15786373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 418
Target Start/End: Original strand, 9165181 - 9165248
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||| | |||||||||  ||||||| |||||||||||||||||||||| || ||||||||||||||    
T  9165181 attggcaccagagagaattgaacctgagactttgaggaggagcacactcccaggtcccaagccaatac 9165248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 363 - 418
Target Start/End: Original strand, 19528325 - 19528380
Alignment:
Q  363 gagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||| ||||||| || |||||||||||||||||| ||||||||||||||||||    
T  19528325 gagaatcgaacctgagaccttgaggaggagcacactcatagatcccaagccaatac 19528380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 418
Target Start/End: Original strand, 33700759 - 33700826
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||| | |||||||||| ||||||| || ||||||||||||||||||| |||| ||||||||||||    
T  33700759 attggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccagattccaagccaatac 33700826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 418
Target Start/End: Complemental strand, 2799952 - 2799885
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||| | |||||||||| ||||||| || ||||||||||||||||||| ||||| |||||| ||||    
T  2799952 attggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccagatctcaagcctatac 2799885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 402
Target Start/End: Complemental strand, 3799996 - 3799945
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactccta 402  Q
    |||||| |||||||||||| |||||||||||| ||||||||||||| |||||    
T  3799996 attggcactagagagaatcgaacctgaaacttcgaggaggagcacattccta 3799945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 418
Target Start/End: Complemental strand, 6650676 - 6650618
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||| ||||||| || ||||||||||||| |||||  ||||||||||||||||    
T  6650676 agagagaatcgaacctgagacattgaggaggagcatactccccgatcccaagccaatac 6650618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 377 - 418
Target Start/End: Original strand, 44046160 - 44046201
Alignment:
Q  377 aaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||| ||||||||||||||||||| |||||||||||||||||    
T  44046160 aaaccttgaggaggagcacactcccagatcccaagccaatac 44046201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 363 - 415
Target Start/End: Complemental strand, 952589 - 952537
Alignment:
Q  363 gagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaa 415  Q
    ||||||| ||||||| |||||||||| ||||||||||| || |||||||||||    
T  952589 gagaatctaacctgagactttgaggatgagcacactcccaggtcccaagccaa 952537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 1600287 - 1600327
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcc 400  Q
    |||||||||| ||||||||||||| ||||||||||||||||    
T  1600287 agagagaatcgaacctgaaactttaaggaggagcacactcc 1600327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 363 - 415
Target Start/End: Complemental strand, 4825049 - 4824997
Alignment:
Q  363 gagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaa 415  Q
    ||||||||||||||| || |||| |||||||||||||| || |||||||||||    
T  4825049 gagaatcaaacctgagaccttgaagaggagcacactccaaggtcccaagccaa 4824997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 417
Target Start/End: Complemental strand, 9964518 - 9964462
Alignment:
Q  361 gagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaata 417  Q
    |||| |||||||||||| || ||||||| ||||||||||| |||||||||| |||||    
T  9964518 gagataatcaaacctgagacattgaggaagagcacactcccagatcccaagtcaata 9964462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 385 - 417
Target Start/End: Complemental strand, 31049669 - 31049637
Alignment:
Q  385 aggaggagcacactcctagatcccaagccaata 417  Q
    |||||||||||||||||||||||||||||||||    
T  31049669 aggaggagcacactcctagatcccaagccaata 31049637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 47720901 - 47720853
Alignment:
Q  370 aaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||| |||||||||||||||||||||||| ||| |||| ||||||    
T  47720901 aaacctgagactttgaggaggagcacactcctatatctcaagtcaatac 47720853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 47727893 - 47727845
Alignment:
Q  370 aaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||| |||||||||||||||||||||||| ||| |||| ||||||    
T  47727893 aaacctgagactttgaggaggagcacactcctatatctcaagtcaatac 47727845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 47753785 - 47753737
Alignment:
Q  370 aaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||| || ||||||||||||||| |||||||||||||| ||||||    
T  47753785 aaacctgagaccttgaggaggagcacagtcctagatcccaagtcaatac 47753737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 418
Target Start/End: Complemental strand, 10526913 - 10526846
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||| ||| |||||||||| || |||| || ||||||||||||| ||||| || ||||||||||||||    
T  10526913 attgactccagagagaatcgaatctgagaccttgaggaggagcaaactcccaggtcccaagccaatac 10526846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 417
Target Start/End: Original strand, 20498344 - 20498395
Alignment:
Q  366 aatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaata 417  Q
    ||||||||||||||| |||||||||| |||| ||| | ||||||||||||||    
T  20498344 aatcaaacctgaaaccttgaggaggatcacaatccaaaatcccaagccaata 20498395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 418
Target Start/End: Original strand, 52116767 - 52116834
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||| |||| ||||||  ||||||| || ||||||||||||||||||| |  ||||||||||||||    
T  52116767 attggcactagggagaattgaacctgagacattgaggaggagcacactcccaagtcccaagccaatac 52116834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 412
Target Start/End: Complemental strand, 20203948 - 20203894
Alignment:
Q  358 ctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagc 412  Q
    ||||||| |||||||||||| |||||||| ||||||| ||||| || ||||||||    
T  20203948 ctagagataatcaaacctgagactttgagaaggagcatactccaaggtcccaagc 20203894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 418
Target Start/End: Original strand, 21547475 - 21547533
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||| |||||||||| | |||||||||||| |||| |  ||||||||||||||    
T  21547475 agagagaatcgaacctgaaacctcgaggaggagcaccctcccatgtcccaagccaatac 21547533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 418
Target Start/End: Original strand, 27476766 - 27476824
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||||||| ||| |  | |||||||||||||||||||  ||||||||||||||    
T  27476766 agagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatac 27476824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 415
Target Start/End: Complemental strand, 30420390 - 30420336
Alignment:
Q  361 gagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaa 415  Q
    |||||| || ||||||| |  ||||||||||||||||||||| ||||||||||||    
T  30420390 gagagattcgaacctgagatgttgaggaggagcacactcctatatcccaagccaa 30420336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 418
Target Start/End: Complemental strand, 36371551 - 36371493
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||| ||||| | || ||||||||||||||||||| || | ||||||||||||    
T  36371551 agagagaatcgaacctcagaccttgaggaggagcacactcccaggttccaagccaatac 36371493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 418
Target Start/End: Original strand, 52336769 - 52336827
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||| |||| ||||||| |  || |||||||||||||||| |||||||||||||||||    
T  52336769 agagataatcgaacctgagatcttaaggaggagcacactcccagatcccaagccaatac 52336827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 417
Target Start/End: Complemental strand, 4566629 - 4566572
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaata 417  Q
    |||||||||| ||||||| ||  |||||||||||||||||| || | |||||||||||    
T  4566629 agagagaatcgaacctgagaccctgaggaggagcacactcccaggttccaagccaata 4566572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 412
Target Start/End: Complemental strand, 17297062 - 17297013
Alignment:
Q  363 gagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagc 412  Q
    ||||||||||| ||| || ||||||||||||||||||| || ||||||||    
T  17297062 gagaatcaaacatgagaccttgaggaggagcacactccaaggtcccaagc 17297013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 398
Target Start/End: Complemental strand, 51281431 - 51281394
Alignment:
Q  361 gagagaatcaaacctgaaactttgaggaggagcacact 398  Q
    ||||||||||||||||| || |||||||||||||||||    
T  51281431 gagagaatcaaacctgagaccttgaggaggagcacact 51281394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 418
Target Start/End: Complemental strand, 51814574 - 51814517
Alignment:
Q  361 gagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||||| ||||||| || ||||||||||||||||||  ||||| |||| ||||||    
T  51814574 gagagaatcgaacctgagaccttgaggaggagcacactctcagatctcaagtcaatac 51814517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 3266005 - 3265965
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcc 400  Q
    |||||||||| ||||||| || |||||||||||||||||||    
T  3266005 agagagaatcgaacctgagaccttgaggaggagcacactcc 3265965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 418
Target Start/End: Complemental strand, 6122877 - 6122817
Alignment:
Q  358 ctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||| ||||| ||||||| || ||||||||||||||||||| |  ||||||||| ||||    
T  6122877 ctagagggaatcgaacctgagaccttgaggaggagcacactcccaagtcccaagcctatac 6122817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 417
Target Start/End: Complemental strand, 12587350 - 12587294
Alignment:
Q  361 gagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaata 417  Q
    ||||||||| ||||||| || | ||||||||||||||||  |||||||||| |||||    
T  12587350 gagagaatcgaacctgagacctcgaggaggagcacactcacagatcccaagtcaata 12587294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 415
Target Start/End: Original strand, 39714777 - 39714828
Alignment:
Q  363 gagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaa 415  Q
    ||||||||||| ||| || ||||| ||||||||||||| ||||||||||||||    
T  39714777 gagaatcaaacttgagaccttgag-aggagcacactccaagatcccaagccaa 39714828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 418
Target Start/End: Complemental strand, 44961848 - 44961788
Alignment:
Q  358 ctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||||| ||||||| ||  ||||||||||||||||| || ||| ||||| |||||    
T  44961848 ctagagagaatcgaacctgagaccctgaggaggagcacactcttaaatctcaagctaatac 44961788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 360 - 418
Target Start/End: Original strand, 37258361 - 37258419
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||    
T  37258361 agagagaatcgaacctgaaaccttgaggaggagcacactcctagatcccaagctaatac 37258419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 418
Target Start/End: Original strand, 29692382 - 29692439
Alignment:
Q  361 gagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||| |||||||| |||||||||||||||||||||| ||||||||| |||||||    
T  29692382 gagagaattaaacctgagactttgaggaggagcacactcccagatcccaatccaatac 29692439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 18437175 - 18437127
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactc 399  Q
    |||||| |||||||||||| |||| ||||||||||||||||||||||||    
T  18437175 attggcactagagagaatcgaacccgaaactttgaggaggagcacactc 18437127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 418
Target Start/End: Original strand, 21549123 - 21549190
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||| ||||||| |||| ||| ||| ||||| |||||||||||||||| || ||||||||||||||    
T  21549123 attggcactagagaaaatcgaacttgagactttaaggaggagcacactcccaggtcccaagccaatac 21549190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 418
Target Start/End: Complemental strand, 43442277 - 43442219
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||| ||||||| || ||||||||||||||||||| ||||| ||| |||||||    
T  43442277 agagagaatcgaacctgagaccttgaggaggagcacactcccagatctcaaaccaatac 43442219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 418
Target Start/End: Original strand, 87423 - 87476
Alignment:
Q  365 gaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||||||||| || ||||||||||||||||||| |||| ||||| ||||||    
T  87423 gaatcaaacctgagaccttgaggaggagcacactcccagattccaaggcaatac 87476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 416
Target Start/End: Complemental strand, 14285251 - 14285186
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaat 416  Q
    |||||| | |||||||||| ||||||| || ||||||||||||||||||| || | ||||||||||    
T  14285251 attggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccaggttccaagccaat 14285186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 418
Target Start/End: Original strand, 14495801 - 14495858
Alignment:
Q  361 gagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||||| |||| || | ||||||||||||||||| |||||||||| ||||||    
T  14495801 gagagaatcaaatctgagacctcgaggaggagcacactcccagatcccaagtcaatac 14495858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 419
Target Start/End: Original strand, 17028257 - 17028318
Alignment:
Q  358 ctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaataca 419  Q
    |||||| ||||||||||||| || ||||||||||||||||||| |  |||||| ||||||||    
T  17028257 ctagagggaatcaaacctgagaccttgaggaggagcacactcccaagtcccaacccaataca 17028318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 414
Target Start/End: Complemental strand, 84902 - 84851
Alignment:
Q  363 gagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagcca 414  Q
    ||||||| ||| ||| || ||||||||||||||||||| |||||||||||||    
T  84902 gagaatcgaacttgagaccttgaggaggagcacactcccagatcccaagcca 84851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 418
Target Start/End: Complemental strand, 29075871 - 29075804
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||| | |||||||||| ||| ||| |  | ||||||||||||||||| |||||||||||||||||    
T  29075871 attggcaccagagagaatcgaacatgagatctcgaggaggagcacactcccagatcccaagccaatac 29075804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 418
Target Start/End: Complemental strand, 34984896 - 34984829
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||| | |||||||||| ||||| | || ||||||||||||||||||| || | ||||||||||||    
T  34984896 attggcaccagagagaatcgaacctaagaccttgaggaggagcacactcccaggttccaagccaatac 34984829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 418
Target Start/End: Complemental strand, 16773888 - 16773830
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||| ||||||| || | ||||||||||||||||| || ||||||| ||||||    
T  16773888 agagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaatac 16773830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 418
Target Start/End: Complemental strand, 25627138 - 25627080
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||| ||||||| || ||||||||||||||||||| |  | ||||||||||||    
T  25627138 agagagaatcgaacctgagaccttgaggaggagcacactcccaagttccaagccaatac 25627080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 418
Target Start/End: Original strand, 22020858 - 22020915
Alignment:
Q  361 gagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||||| || |||| ||||  |||||||||||||||| ||||||||||| |||||    
T  22020858 gagagaatcgaatctgagacttcaaggaggagcacactcccagatcccaagctaatac 22020915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 417
Target Start/End: Complemental strand, 25979251 - 25979194
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaata 417  Q
    |||||||||| ||||||| || ||||||||||| ||||||| | || |||||||||||    
T  25979251 agagagaatcgaacctgagaccttgaggaggagaacactcccaaattccaagccaata 25979194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 16457869 - 16457833
Alignment:
Q  382 ttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||||||||||||||| || ||||||||||||||    
T  16457869 ttgaggaggagcacactccaaggtcccaagccaatac 16457833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 418
Target Start/End: Original strand, 17761352 - 17761408
Alignment:
Q  362 agagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||| | ||| ||||||  |||||||||||||||| |||||||||||| ||||    
T  17761352 agagaatcgatcctaaaacttcaaggaggagcacactcccagatcccaagccgatac 17761408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 30883215 - 30883251
Alignment:
Q  382 ttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||||||||||||||| || ||||||||||||||    
T  30883215 ttgaggaggagcacactcccaggtcccaagccaatac 30883251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 351 - 418
Target Start/End: Original strand, 12188289 - 12188356
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||| |||||||||||| ||| |||||| ||||||||||||||||||| || ||||||||||||||    
T  12188289 attggcactagagagaatcgaacttgaaaccttgaggaggagcacactcccaggtcccaagccaatac 12188356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 365 - 418
Target Start/End: Original strand, 10338174 - 10338227
Alignment:
Q  365 gaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||| ||||||| || |||||||||||||||||||||| ||||||||||||||    
T  10338174 gaatcgaacctgagaccttgaggaggagcacactcctaggtcccaagccaatac 10338227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 418
Target Start/End: Original strand, 6776602 - 6776660
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||||||| ||| || | |||||||||||||| || |||||||||||||||||    
T  6776602 agagagaatcaaacttgagacatcgaggaggagcacacccccagatcccaagccaatac 6776660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 418
Target Start/End: Complemental strand, 33549184 - 33549127
Alignment:
Q  361 gagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||||| ||||||| || | ||||||||||||||||| || ||||||||||||||    
T  33549184 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaatac 33549127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 418
Target Start/End: Original strand, 34786450 - 34786507
Alignment:
Q  361 gagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||||| ||| ||| |||| ||| ||||||||||||| |||||||||||||||||    
T  34786450 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 34786507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 424
Target Start/End: Original strand, 14278106 - 14278170
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatacatcagg 424  Q
    |||||||||||||||||| || || ||||||||| |||||| || ||| ||||||||||| ||||    
T  14278106 agagagaatcaaacctgagaccttaaggaggagcgcactcccaggtccaaagccaatacaccagg 14278170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 16535274 - 16535226
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactc 399  Q
    |||||| ||| |||||||| ||||||||||||| |||||||||||||||    
T  16535274 attggcactacagagaatcgaacctgaaacttttaggaggagcacactc 16535226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 415
Target Start/End: Complemental strand, 20863457 - 20863401
Alignment:
Q  359 tagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaa 415  Q
    |||||||||||||| |||| || ||||||||||||||||||| |  |||||||||||    
T  20863457 tagagagaatcaaatctgagaccttgaggaggagcacactccaaagtcccaagccaa 20863401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 418
Target Start/End: Original strand, 24641188 - 24641243
Alignment:
Q  363 gagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||| ||||| |||| | ||||||||||||||||| |||||||||| ||||||    
T  24641188 gagaatcgaaccttaaacctcgaggaggagcacactcccagatcccaagtcaatac 24641243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 412
Target Start/End: Complemental strand, 20213124 - 20213070
Alignment:
Q  358 ctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagc 412  Q
    |||||| ||||| ||||||| || ||||||||||||||||||| || ||||||||    
T  20213124 ctagagggaatcgaacctgagacattgaggaggagcacactcccaggtcccaagc 20213070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 412
Target Start/End: Complemental strand, 22107147 - 22107093
Alignment:
Q  358 ctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagc 412  Q
    |||||| ||||| ||||||| || ||||||||||||||||||| || ||||||||    
T  22107147 ctagagggaatcgaacctgagacattgaggaggagcacactcccaggtcccaagc 22107093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 418
Target Start/End: Original strand, 31622994 - 31623044
Alignment:
Q  368 tcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||| || | ||||||||||||||||| || ||||||||||||||    
T  31622994 tcaaacctgagacctcgaggaggagcacactcccaggtcccaagccaatac 31623044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 418
Target Start/End: Original strand, 32201881 - 32201938
Alignment:
Q  361 gagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||| |||| ||| ||||||||  |||||||||||||||  |||||||||||||||||    
T  32201881 gagataatcgaacttgaaacttaaaggaggagcacactctgagatcccaagccaatac 32201938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 416
Target Start/End: Complemental strand, 18389 - 18324
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaat 416  Q
    |||||| | ||||||||||||||||||||| ||||||||||||||| ||| |||| ||||||||||    
T  18389 attggcaccagagagaatcaaacctgaaaccttgaggaggagcacaatcccagattccaagccaat 18324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 414
Target Start/End: Complemental strand, 222588 - 222536
Alignment:
Q  362 agagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagcca 414  Q
    ||||||||||||||||||| |||||||||| |||| ||  |||| ||||||||    
T  222588 agagaatcaaacctgaaaccttgaggaggaacacaatctcagattccaagcca 222536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1367 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 358 - 418
Target Start/End: Original strand, 833 - 893
Alignment:
Q  358 ctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||||| ||||||| |||| ||||||||||||| ||| |||||||||||||||||    
T  833 ctagagagaatcgaacctgagacttcgaggaggagcacattcccagatcccaagccaatac 893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 418
Target Start/End: Complemental strand, 6536610 - 6536543
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||| | |||||||||  ||||||| || |||||||||||||||||||||| ||||||||||||||    
T  6536610 attggcaccagagagaattgaacctgagaccttgaggaggagcacactcctaggtcccaagccaatac 6536543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 417
Target Start/End: Complemental strand, 34628722 - 34628666
Alignment:
Q  361 gagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaata 417  Q
    ||||||||| ||||||| ||||||||||| | |||||||| ||||||||||||||||    
T  34628722 gagagaatcgaacctgagactttgaggagaaacacactcccagatcccaagccaata 34628666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 418
Target Start/End: Original strand, 30483870 - 30483937
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||| | |||||||||  ||||||| ||| |||||||||||||||||| | |||||||||||||||    
T  30483870 attggcacaagagagaattgaacctgagactctgaggaggagcacactcccatatcccaagccaatac 30483937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 358 - 417
Target Start/End: Original strand, 43594311 - 43594370
Alignment:
Q  358 ctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaata 417  Q
    |||||||||||| ||||||| || |||||||||| |||| |||||||||| |||||||||    
T  43594311 ctagagagaatcgaacctgagaccttgaggaggaacacattcctagatcctaagccaata 43594370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 418
Target Start/End: Original strand, 35690059 - 35690117
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||| ||||||| || ||||||||||||| || || |||||||||||||||||    
T  35690059 agagagaatcgaacctgagaccttgaggaggagcaaacacccagatcccaagccaatac 35690117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 416
Target Start/End: Original strand, 44780107 - 44780165
Alignment:
Q  358 ctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaat 416  Q
    |||||| ||||||||||||| || ||||||||||||||||||| |  ||||||||||||    
T  44780107 ctagagggaatcaaacctgagaccttgaggaggagcacactcccaagtcccaagccaat 44780165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 418
Target Start/End: Complemental strand, 968442 - 968385
Alignment:
Q  361 gagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||||| ||||||| || | ||||||||||||||||| || ||||||||||||||    
T  968442 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaatac 968385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 418
Target Start/End: Complemental strand, 3624660 - 3624603
Alignment:
Q  361 gagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||||| ||||||| || |||| |||||||||||||| || ||||||||||||||    
T  3624660 gagagaatcgaacctgagaccttgaagaggagcacactcccaggtcccaagccaatac 3624603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 418
Target Start/End: Original strand, 19703480 - 19703540
Alignment:
Q  358 ctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||| ||||||| ||||||| || ||||||||||||||||||  || ||||||||||||||    
T  19703480 ctagggagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaatac 19703540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 399
Target Start/End: Original strand, 31408116 - 31408156
Alignment:
Q  359 tagagagaatcaaacctgaaactttgaggaggagcacactc 399  Q
    ||||||||||| |||||||||| ||||||||||||||||||    
T  31408116 tagagagaatcgaacctgaaaccttgaggaggagcacactc 31408156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 417
Target Start/End: Original strand, 6569768 - 6569823
Alignment:
Q  362 agagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaata 417  Q
    |||||||| ||| |||||| |  |||||||||||||||| ||||||||||||||||    
T  6569768 agagaatcgaacatgaaacctaaaggaggagcacactcccagatcccaagccaata 6569823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 418
Target Start/End: Complemental strand, 12988518 - 12988451
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||| | |||||| ||| |||||||||| ||||||||||||||||| | || | ||||||||||||    
T  12988518 attggcaccagagaggatcgaacctgaaaccttgaggaggagcacacttccaggttccaagccaatac 12988451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 418
Target Start/End: Complemental strand, 16852418 - 16852363
Alignment:
Q  363 gagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||| ||||||| || | ||||||||||||||||| || ||||||||||||||    
T  16852418 gagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaatac 16852363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 418
Target Start/End: Complemental strand, 18540388 - 18540321
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||| | |||||||||| ||||||| || |||||||| || ||||||| || ||||||||||||||    
T  18540388 attggcaccagagagaatcgaacctgagaccttgaggagaagtacactcccaggtcccaagccaatac 18540321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 414
Target Start/End: Complemental strand, 27871750 - 27871695
Alignment:
Q  359 tagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagcca 414  Q
    ||||||||||| ||| ||| ||||||||||||| || ||||| |||||||||||||    
T  27871750 tagagagaatcgaacttgagactttgaggaggaacaaactccaagatcccaagcca 27871695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 418
Target Start/End: Original strand, 23361644 - 23361702
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||  ||||||| || ||||||||||||||||||| | |||||||| ||||||    
T  23361644 agagagaattgaacctgagaccttgaggaggagcacactcccatatcccaagtcaatac 23361702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 417
Target Start/End: Complemental strand, 33017304 - 33017238
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaata 417  Q
    |||||| | |||||||||| ||||||| || ||||||||||||||||| | || | |||||||||||    
T  33017304 attggcaccagagagaatcgaacctgagaccttgaggaggagcacacttccaggttccaagccaata 33017238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 373 - 418
Target Start/End: Complemental strand, 2203560 - 2203515
Alignment:
Q  373 cctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||| || ||||||||||||||||||| || ||||||||||||||    
T  2203560 cctgagaccttgaggaggagcacactcccaggtcccaagccaatac 2203515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 400
Target Start/End: Complemental strand, 13129758 - 13129709
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcc 400  Q
    |||||| | |||||||||| |||||||||| |||||||||||| ||||||    
T  13129758 attggcaccagagagaatcgaacctgaaaccttgaggaggagcgcactcc 13129709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 420
Target Start/End: Original strand, 40136961 - 40137017
Alignment:
Q  363 gagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatacat 420  Q
    ||||||||||||||| || ||||| ||||||||||||| || ||||||||||| ||||    
T  40136961 gagaatcaaacctgagaccttgag-aggagcacactccaaggtcccaagccaacacat 40137017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 415
Target Start/End: Complemental strand, 6530884 - 6530833
Alignment:
Q  363 gagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaa 415  Q
    ||||||| ||||||| || ||||| |||||||||||||||| |||||||||||    
T  6530884 gagaatcgaacctgagacattgag-aggagcacactcctaggtcccaagccaa 6530833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 412
Target Start/End: Original strand, 11793520 - 11793568
Alignment:
Q  364 agaatcaaacctgaaactttgaggaggagcacactcctagatcccaagc 412  Q
    |||||||||||| | || ||||||||||||||||||| || ||||||||    
T  11793520 agaatcaaacctaagaccttgaggaggagcacactccaaggtcccaagc 11793568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 418
Target Start/End: Complemental strand, 11819859 - 11819799
Alignment:
Q  358 ctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||| ||||| ||||||| || ||||||||||||||||||| |  ||||||||| ||||    
T  11819859 ctagagtgaatcgaacctgagaccttgaggaggagcacactcccaagtcccaagcctatac 11819799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 415
Target Start/End: Complemental strand, 26688935 - 26688891
Alignment:
Q  371 aacctgaaactttgaggaggagcacactcctagatcccaagccaa 415  Q
    ||||||| || ||||||||||||||||||| || |||||||||||    
T  26688935 aacctgagaccttgaggaggagcacactccaaggtcccaagccaa 26688891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 418
Target Start/End: Complemental strand, 27750813 - 27750753
Alignment:
Q  358 ctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||| ||||| ||||||| || ||||||||||||||||||| |  ||||||||| ||||    
T  27750813 ctagagggaatcgaacctgagaccttgaggaggagcacactcccaagtcccaagcctatac 27750753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 418
Target Start/End: Original strand, 26459396 - 26459463
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||| | |||||||||| ||||||| || ||||||||||||||||||| || ||||||||||||||    
T  26459396 attggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaatac 26459463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 360 - 418
Target Start/End: Complemental strand, 43215265 - 43215207
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||| ||||||| || ||||||||||||||||||| || ||||||||||||||    
T  43215265 agagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaatac 43215207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 351 - 416
Target Start/End: Original strand, 17040998 - 17041063
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaat 416  Q
    |||||| || ||||||||| ||||||| || ||||||||||||||||| | |||||||||||||||    
T  17040998 attggcacttgagagaatcgaacctgagaccttgaggaggagcacacttccagatcccaagccaat 17041063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 418
Target Start/End: Complemental strand, 18363779 - 18363719
Alignment:
Q  358 ctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||||||||||||| || ||||||||||||||||||| | ||| |||||| ||||    
T  18363779 ctagagagaatcaaacctgagaccttgaggaggagcacactcccaaatctcaagcctatac 18363719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 15137634 - 15137583
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaag 411  Q
    |||||||||| ||||||| || ||||||||||||||||||||| ||||||||    
T  15137634 agagagaatctaacctgagaccttgaggaggagcacactcctaaatcccaag 15137583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 418
Target Start/End: Complemental strand, 43590997 - 43590930
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||| |||| ||||||| ||||||| || ||||||||||||||||||| |  ||||||||||||||    
T  43590997 attggcactagggagaatcgaacctgagacattgaggaggagcacactcccaagtcccaagccaatac 43590930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 418
Target Start/End: Original strand, 41519259 - 41519317
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||| | ||||||| || ||||||||||||||||||||| |||||||| ||||||    
T  41519259 agagagaagcgaacctgagaccttgaggaggagcacactcctaaatcccaagtcaatac 41519317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 373 - 418
Target Start/End: Complemental strand, 21854616 - 21854571
Alignment:
Q  373 cctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||| |||||||||||||||||||||| ||||||| |||||||||    
T  21854616 cctgagactttgaggaggagcacactcccagatccctagccaatac 21854571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 362 - 415
Target Start/End: Original strand, 29385740 - 29385793
Alignment:
Q  362 agagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaa 415  Q
    |||||||||||||||| || ||||||||||||||||||| |  |||||||||||    
T  29385740 agagaatcaaacctgagaccttgaggaggagcacactccaaagtcccaagccaa 29385793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 363 - 415
Target Start/End: Original strand, 5579232 - 5579284
Alignment:
Q  363 gagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaa 415  Q
    |||| |||||||||| || ||||||||||||||||||| || |||||||||||    
T  5579232 gagagtcaaacctgagaccttgaggaggagcacactccaaggtcccaagccaa 5579284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 418
Target Start/End: Original strand, 9608622 - 9608682
Alignment:
Q  358 ctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||||| ||||||| |  ||||||||||| ||||||| |||||||||||| ||||    
T  9608622 ctagagagaatcgaacctgagatcttgaggaggaggacactcccagatcccaagcctatac 9608682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 418
Target Start/End: Original strand, 9836194 - 9836254
Alignment:
Q  358 ctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||||| ||||||| |  ||||||||||| ||||||| |||||||||||| ||||    
T  9836194 ctagagagaatcgaacctgagatcttgaggaggaggacactcccagatcccaagcctatac 9836254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 417
Target Start/End: Original strand, 5716629 - 5716684
Alignment:
Q  362 agagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaata 417  Q
    |||||||| ||||| |||| || || ||||||||||||||| ||||||||||||||    
T  5716629 agagaatcgaacctaaaacattaagaaggagcacactcctaaatcccaagccaata 5716684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 418
Target Start/End: Complemental strand, 22760941 - 22760886
Alignment:
Q  363 gagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||| ||||||| || ||||||||||||||||||| || ||||||| ||||||    
T  22760941 gagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagtcaatac 22760886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 418
Target Start/End: Original strand, 25021349 - 25021388
Alignment:
Q  379 actttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||||||||||||||| || ||||||||||||||    
T  25021349 actttgaggaggagcacactcccaggtcccaagccaatac 25021388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 418
Target Start/End: Original strand, 37085547 - 37085602
Alignment:
Q  363 gagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||| |||||||||| | ||||| ||||||||||| | |||||||||||||||    
T  37085547 gagaatcgaacctgaaacctcgaggatgagcacactcccaaatcccaagccaatac 37085602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 418
Target Start/End: Complemental strand, 39631934 - 39631867
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||| | |||||||||| ||||||| || ||||||||||||  ||||| || ||||||||||||||    
T  39631934 attggcacaagagagaatcgaacctgagaccttgaggaggagcttactcccaggtcccaagccaatac 39631867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 412
Target Start/End: Original strand, 44628183 - 44628230
Alignment:
Q  365 gaatcaaacctgaaactttgaggaggagcacactcctagatcccaagc 412  Q
    ||||||||| ||| |||||||||||||||||||||| || ||||||||    
T  44628183 gaatcaaacttgagactttgaggaggagcacactccaaggtcccaagc 44628230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 418
Target Start/End: Original strand, 7744107 - 7744165
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||||||||||| || ||||||||||||| | ||| |||||| ||||| ||||    
T  7744107 agagagaatcaaacctgagaccttgaggaggagcatagtcccagatcctaagcctatac 7744165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 417
Target Start/End: Complemental strand, 23552200 - 23552142
Alignment:
Q  359 tagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaata 417  Q
    ||||||||||| ||| ||| || ||||||||||||||||||| || ||||||| |||||    
T  23552200 tagagagaatcgaacttgagaccttgaggaggagcacactcccaggtcccaagtcaata 23552142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 409
Target Start/End: Original strand, 29916806 - 29916852
Alignment:
Q  363 gagaatcaaacctgaaactttgaggaggagcacactcctagatccca 409  Q
    ||||||| ||||||| || |||||||||||||||||| |||||||||    
T  29916806 gagaatcgaacctgagaccttgaggaggagcacactcttagatccca 29916852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 418
Target Start/End: Complemental strand, 38851337 - 38851279
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||||||| |||||| |||||||| |||||||||  |||| |||| |||||||    
T  38851337 agagagaatcaaacatgaaaccttgaggagaagcacactcacagattccaaaccaatac 38851279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 9183186 - 9183231
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagat 405  Q
    ||||| |||| ||||||| |||||||||||||||||||||| ||||    
T  9183186 agagataatcgaacctgagactttgaggaggagcacactcccagat 9183231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 413
Target Start/End: Original strand, 9871281 - 9871334
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagcc 413  Q
    |||||||||| || |||| |||| ||||||||||||||||| | ||||||||||    
T  9871281 agagagaatcgaatctgagacttcgaggaggagcacactcccaaatcccaagcc 9871334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 385 - 418
Target Start/End: Complemental strand, 48771994 - 48771961
Alignment:
Q  385 aggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||||||||| |||||||||||||||||    
T  48771994 aggaggagcacactcccagatcccaagccaatac 48771961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 418
Target Start/End: Complemental strand, 30442567 - 30442511
Alignment:
Q  362 agagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||| ||||| | || ||||||||||||| ||||| || ||||||||||||||    
T  30442567 agagaatcgaacctcagaccttgaggaggagcaaactcccaggtcccaagccaatac 30442511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 360 - 418
Target Start/End: Complemental strand, 11609 - 11551
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||| ||||||| || | ||||||||||||||||| |||||||||||||||||    
T  11609 agagagaatcgaacctgagacctcgaggaggagcacactcccagatcccaagccaatac 11551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 361 - 418
Target Start/End: Original strand, 13042 - 13099
Alignment:
Q  361 gagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||||| ||||||| || ||||||||||||||||||| ||||| |||||||||||    
T  13042 gagagaatcgaacctgagaccttgaggaggagcacactcccagatctcaagccaatac 13099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 418
Target Start/End: Original strand, 42327392 - 42327448
Alignment:
Q  362 agagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||| ||||||| || ||||||||||||||||||| || ||||||||||||||    
T  42327392 agagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaatac 42327448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 418
Target Start/End: Complemental strand, 19322858 - 19322791
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||| ||||||||||||||||| || || |||| |||||||||||||| || |||||| |||||||    
T  19322858 attggcactagagagaatcaaaccagagaccttgaagaggagcacactcccaggtcccaaaccaatac 19322791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 418
Target Start/End: Complemental strand, 11251168 - 11251110
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||||||||||| || ||||||||||||||||| | |  ||||||||||||||    
T  11251168 agagagaatcaaacctgagaccttgaggaggagcacacttccaagtcccaagccaatac 11251110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 418
Target Start/End: Original strand, 16918573 - 16918631
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||| ||||| | || ||||||||||||||||||| ||||||||| |||||||    
T  16918573 agagagaatccaacctaagaccttgaggaggagcacactcccagatcccaaaccaatac 16918631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 418
Target Start/End: Complemental strand, 42602634 - 42602577
Alignment:
Q  361 gagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||||||||||| | || ||||| ||||||||||||| || ||||||||||||||    
T  42602634 gagagaatcaaacctaagaccttgagaaggagcacactcccaggtcccaagccaatac 42602577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 417
Target Start/End: Original strand, 4262298 - 4262354
Alignment:
Q  361 gagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaata 417  Q
    ||||||||| ||||||| || ||||||||||||||||| | || |||||||||||||    
T  4262298 gagagaatcgaacctgagaccttgaggaggagcacactgccaggtcccaagccaata 4262354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 365 - 417
Target Start/End: Complemental strand, 10449098 - 10449046
Alignment:
Q  365 gaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaata 417  Q
    ||||| ||| |||||| ||||||||||||||||||||||||| |||| |||||    
T  10449098 gaatcgaacatgaaaccttgaggaggagcacactcctagatcacaagtcaata 10449046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 30410566 - 30410602
Alignment:
Q  382 ttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||||||||||||||| ||||||||||||||    
T  30410566 ttgaggaggagcacactcctaggtcccaagccaatac 30410602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 418
Target Start/End: Complemental strand, 42922505 - 42922437
Alignment:
Q  351 attggctctagagagaatcaaacctgaaac-tttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||| | |||||||||| ||||||| || |||||||||||||||||||| || | ||||||||||||    
T  42922505 attggcaccagagagaatcgaacctgagacctttgaggaggagcacactcccaggttccaagccaatac 42922437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 418
Target Start/End: Complemental strand, 29503349 - 29503294
Alignment:
Q  363 gagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||| ||||||| || ||||||||||||||||||| || |||||| |||||||    
T  29503349 gagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaaaccaatac 29503294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 418
Target Start/End: Original strand, 34041574 - 34041641
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||| | |||| ||||||||||||| || ||||||||||||||||||  |||||| ||| ||||||    
T  34041574 attggcaccagagggaatcaaacctgagaccttgaggaggagcacactctcagatcctaagtcaatac 34041641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 418
Target Start/End: Complemental strand, 37480153 - 37480098
Alignment:
Q  363 gagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||| ||||||| || ||||||||||||||||||  || ||||||||||||||    
T  37480153 gagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaatac 37480098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 402
Target Start/End: Complemental strand, 45026833 - 45026782
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactccta 402  Q
    |||||| | |||||||||||||| ||| || |||||||||||||||||||||    
T  45026833 attggcaccagagagaatcaaacatgagaccttgaggaggagcacactccta 45026782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 417
Target Start/End: Original strand, 727626 - 727692
Alignment:
Q  351 attggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaata 417  Q
    |||||| | |||||||||| ||| ||||| |||||||| || ||||||||| | |||||||||||||    
T  727626 attggcaccagagagaatcgaacatgaaattttgaggacgaacacactcctcggtcccaagccaata 727692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 417
Target Start/End: Original strand, 6859306 - 6859364
Alignment:
Q  359 tagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaata 417  Q
    ||||||||||| ||||||| ||||||| |||||||||||||| | ||| |||| |||||    
T  6859306 tagagagaatcgaacctgagactttgaagaggagcacactcccatatcacaagtcaata 6859364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 415
Target Start/End: Original strand, 8192464 - 8192529
Alignment:
Q  349 acattggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaa 415  Q
    |||||||| | |||| ||||| ||||||| || ||||| ||||||||||||| ||||||||||||||    
T  8192464 acattggcaccagagggaatcgaacctgagaccttgag-aggagcacactccaagatcccaagccaa 8192529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 417
Target Start/End: Complemental strand, 11062441 - 11062384
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaata 417  Q
    |||||||||||||||||| || |||||||| |||||||||| |  | |||||||||||    
T  11062441 agagagaatcaaacctgagaccttgaggagaagcacactcccaagttccaagccaata 11062384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 417
Target Start/End: Complemental strand, 13803576 - 13803519
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaata 417  Q
    ||||| |||| ||||||| || |||||||||||||||||||||  || ||||||||||    
T  13803576 agagataatcgaacctgagaccttgaggaggagcacactcctaagtctcaagccaata 13803519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 418
Target Start/End: Original strand, 23052511 - 23052576
Alignment:
Q  353 tggctctagagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||| |||| ||||||| ||||||| || |||||||| |||||||||| |  ||||||||||||||    
T  23052511 tggcactagggagaatcgaacctgagaccttgaggagaagcacactcccaagtcccaagccaatac 23052576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 410
Target Start/End: Original strand, 23230601 - 23230650
Alignment:
Q  361 gagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaa 410  Q
    ||||||||  |||||| ||||||||||||||||||||||| || ||||||    
T  23230601 gagagaattgaacctggaactttgaggaggagcacactcccagttcccaa 23230650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 366 - 415
Target Start/End: Complemental strand, 40591250 - 40591202
Alignment:
Q  366 aatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaa 415  Q
    |||||||||||| |||||||| ||||||||||||| ||||| ||||||||    
T  40591250 aatcaaacctgagactttgag-aggagcacactccaagatctcaagccaa 40591202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 415
Target Start/End: Original strand, 12517751 - 12517803
Alignment:
Q  363 gagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaa 415  Q
    ||||||||||| ||| || ||||||||||||| ||||| || |||||||||||    
T  12517751 gagaatcaaacatgagaccttgaggaggagcaaactccaaggtcccaagccaa 12517803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 415
Target Start/End: Complemental strand, 26482170 - 26482119
Alignment:
Q  363 gagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaa 415  Q
    ||||||| ||||||| || ||||| |||||||||||||||| |||||||||||    
T  26482170 gagaatcgaacctgagaccttgag-aggagcacactcctaggtcccaagccaa 26482119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 415
Target Start/End: Complemental strand, 31681127 - 31681075
Alignment:
Q  363 gagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaa 415  Q
    ||||||| ||||||| ||||||||||| |||||||||| || || ||||||||    
T  31681127 gagaatcgaacctgagactttgaggagaagcacactccaaggtctcaagccaa 31681075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 418
Target Start/End: Original strand, 15319 - 15376
Alignment:
Q  361 gagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||||| ||||||| || | ||||||||||||||||| || ||||||||||||||    
T  15319 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaatac 15376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 416
Target Start/End: Complemental strand, 5274 - 5218
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaat 416  Q
    |||||||||| ||||| ||||||| |||||||||||||||| |  ||||||||||||    
T  5274 agagagaatcgaacctaaaactttaaggaggagcacactcccaagtcccaagccaat 5218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 418
Target Start/End: Original strand, 2468 - 2523
Alignment:
Q  363 gagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||| ||||||| || ||||||||||||||||||| |||||| || |||||||    
T  2468 gagaatcgaacctgagaccttgaggaggagcacactcccagatccaaaaccaatac 2523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 418
Target Start/End: Original strand, 15775 - 15830
Alignment:
Q  363 gagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||||||| ||| || ||||||||||||| ||||| | |||||||||||||||    
T  15775 gagaatcaaacttgagaccttgaggaggagcatactccaaaatcccaagccaatac 15830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 418
Target Start/End: Original strand, 19957 - 20015
Alignment:
Q  360 agagagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||||| ||||||| || ||||||||||||| ||||| || | ||||||||||||    
T  19957 agagagaatcgaacctgagaccttgaggaggagcatactcccaggttccaagccaatac 20015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 418
Target Start/End: Original strand, 42517 - 42573
Alignment:
Q  362 agagaatcaaacctgaaactttgaggaggagcacactcctagatcccaagccaatac 418  Q
    |||||||| ||||||| ||| |||||||||||| ||||| |||| ||||| ||||||    
T  42517 agagaatcgaacctgagactctgaggaggagcatactcccagattccaagtcaatac 42573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 35406 - 35442
Alignment:
Q  382 ttgaggaggagcacactcctagatcccaagccaatac 418  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  35406 ttgaggaggagcatactcctagattccaagccaatac 35442  T

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