View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_high_29 (Length: 399)
Name: NF19675_high_29
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 47487051 - 47486671
Alignment:
| Q |
1 |
cttggaacccaaggctttcaggtttcaaaaatgggatttgggtgtatgggactcagtggagcctacagtgatcttcttcctgagcaagatggtatttcca |
100 |
Q |
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| T |
47487051 |
cttggaacccaaggctttcaggtttcaaaaatgggatttgggtgtatgggactcggtggagcctacagtgatcttcttcctgagcaagatggtatttcca |
47486952 |
T |
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| Q |
101 |
taattaagtatgcatttagtaaaggcatcactttatttgatactgctgatgtttatggagtcgatggtggtaatgaaatattggttggaaaggtacatgc |
200 |
Q |
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| T |
47486951 |
taattaagtatgcatttagtaaaggcatcactttatttgatactgctgatgtttatggagtcgatggtggtaatgaaatattggttggaaaggtacatgc |
47486852 |
T |
|
| Q |
201 |
atacaaataactacggaccaagaatttctttaatgttctaaattttatattgcaaatgaaacttcatgctaattttagtttataattatttggttttgtt |
300 |
Q |
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| T |
47486851 |
atacaaataactacgtaccaagaatttctttaatgttctaaattttatattgcaaatgaaacttcatgctaattttagtttataattatttggttttgtt |
47486752 |
T |
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| Q |
301 |
gactaggctttaaagcaactacctagagaaaaggtccaggtggctacaaaattcggtatagccagaaacgatgattctggt |
381 |
Q |
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| T |
47486751 |
gactaggctttaaagcaactacctagagaaaaggtccaggtggctacaaaattcggtatagccagaagcgatgattctggt |
47486671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 47474385 - 47474191
Alignment:
| Q |
1 |
cttggaacccaaggctttcaggtttcaaaaatgggatttgggtgtatgggactcagtggagcctacagtgatcttcttcctgagcaagatggtatttcca |
100 |
Q |
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| T |
47474385 |
cttggaacccaaggctttcaggtttcaaaattgggtttcgggtgtatgggactcactggagcttacaatgatcctcttcctgaacaagatggtatttccg |
47474286 |
T |
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| Q |
101 |
taattaagtatgcatttagtaaaggcatcactttatttgatactgctgatgtttatggagtcgatggtggtaatgaaatattggttggaaaggta |
195 |
Q |
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| T |
47474285 |
taattaactatgctttcagtaaaggcgttactttttttgatactgctgatatctatggaggtagtggtgctaatgaaattttacttggaaaggta |
47474191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 40 - 195
Target Start/End: Complemental strand, 47477838 - 47477683
Alignment:
| Q |
40 |
gggtgtatgggactcagtggagcctacagtgatcttcttcctgagcaagatggtatttccataattaagtatgcatttagtaaaggcatcactttatttg |
139 |
Q |
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| T |
47477838 |
gggtgtatggccctcagtggaggatacaatgatcctcttcctgaagaaattggcatttccgtaattaatcatgcattcagtaaaggcatcactttttttg |
47477739 |
T |
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| Q |
140 |
atactgctgatgtttatggagtcgatggtggtaatgaaatattggttggaaaggta |
195 |
Q |
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| T |
47477738 |
acaccgctgatgtttatggactcgatggtgggaatgaaattttggttggaaaggta |
47477683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 285 - 367
Target Start/End: Complemental strand, 47477474 - 47477392
Alignment:
| Q |
285 |
attatttggttttgttgactaggctttaaagcaactacctagagaaaaggtccaggtggctacaaaattcggtatagccagaa |
367 |
Q |
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| T |
47477474 |
attatttgattttgttgactaggctttaaagcaactgcccagagaaaagatccaggtggctacaaaatttggtatatccagaa |
47477392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 288 - 360
Target Start/End: Complemental strand, 47474149 - 47474077
Alignment:
| Q |
288 |
atttggttttgttgactaggctttaaagcaactacctagagaaaaggtccaggtggctacaaaattcggtata |
360 |
Q |
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||||| ||||||||||||||| ||||||||| | || ||||||||| ||||| ||||||||||||| |||||| |
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| T |
47474149 |
atttgattttgttgactaggcattaaagcaattgcccagagaaaagatccagttggctacaaaatttggtata |
47474077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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