View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_high_35 (Length: 373)
Name: NF19675_high_35
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_high_35 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 373
Target Start/End: Original strand, 50047395 - 50047752
Alignment:
| Q |
19 |
ttttcttcctttaacttccactaggaagacataaaactatgttgatgttagtgttatagaattcaatgctaagtcaagggttaaactaccatgaaaaatc |
118 |
Q |
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| T |
50047395 |
ttttcttcctttaacttccactaggaagacataaaactatgttgatgttagtgttatagaattcaatgctaagtcaagggttaaactaccatgaaaaatc |
50047494 |
T |
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| Q |
119 |
ttcataaaatttaccatagcaaaggttcggacagagctatgaaccaccagatttgtcatgtttccgataatatatgcagtgagtccgatgttaaacagca |
218 |
Q |
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| T |
50047495 |
ttcataaaatttaccatagcaaaggttcggacagagctatgaaccaccagatttgtcatgtttccgataatatatgcagtgagtccgatgttaaacagca |
50047594 |
T |
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| Q |
219 |
tataaaaaatattgaaaaccttctccgttgtattttctgcatgtaaatctccatagccaacagtggtaagggttacaatagaccaatacatggagtaagt |
318 |
Q |
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| T |
50047595 |
tataaaaaatattgaaaaccttctccgttgtattttctgcatgtaaatctccatagccaacagtggtaagggttacaatagaccaatacatggagtaagt |
50047694 |
T |
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| Q |
319 |
gtaacccgatccgacactcctatgctt---ctccactacctgcttcccaatccacgtg |
373 |
Q |
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| T |
50047695 |
gtaacccgatccgacactcctatgcttaaaatcctctacctgcttcccaatccacgtg |
50047752 |
T |
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