View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19675_high_41 (Length: 316)

Name: NF19675_high_41
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19675_high_41
NF19675_high_41
[»] chr7 (1 HSPs)
chr7 (14-301)||(10240021-10240308)


Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 14 - 301
Target Start/End: Complemental strand, 10240308 - 10240021
Alignment:
Q  14 atattcgtcaatttctgacaccgggcgcgtcttctcctttgatgataattccatttcgatgaacgaaattgaccaaaccacatagaaccatataatatgt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10240308 atattcgtcaatttctgacaccgggcgcgtcttctcctttgatgataattccatttcgatgaacgaaattgaccaaaccacatagaaccatataatatgt 10240209  T
Q  114 tgagatattctactctttttgccatggaataagcctcccagtcgagcatttaacgtgggggagtgtcaaacgacaaaagtcacttccccaccaagatgcc 213  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  10240208 tgagatattctactccttttgccatggaataagcctcccagtcgagcatttaacgtgggggagtgtcaaacgacaaatgacacttccccaccaagatgcc 10240109  T
Q  214 cttttttatttgtatttttcaaacttcttgttgcctcttgcttgtttgtacttgtcttatgaatttggggttcttaccctttgtattt 301  Q
     |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10240108 tttttttatttgtttttttcaaacttcttgttgcctcctgcttgtttgtacttgtcttatgaatttggggttcttaccctttgtattt 10240021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University