View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19675_high_42 (Length: 316)

Name: NF19675_high_42
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19675_high_42
NF19675_high_42
[»] chr5 (6 HSPs)
chr5 (154-222)||(35847235-35847304)
chr5 (154-222)||(25362410-25362479)
chr5 (154-222)||(17218852-17218921)
chr5 (154-214)||(39369007-39369067)
chr5 (154-218)||(42742213-42742276)
chr5 (154-189)||(1223089-1223124)
[»] chr1 (2 HSPs)
chr1 (158-222)||(4397349-4397414)
chr1 (158-204)||(38710108-38710154)
[»] chr2 (2 HSPs)
chr2 (158-220)||(37128802-37128865)
chr2 (154-219)||(41958372-41958438)
[»] chr3 (4 HSPs)
chr3 (154-204)||(45181750-45181800)
chr3 (154-222)||(16285203-16285272)
chr3 (154-218)||(23087652-23087717)
chr3 (156-199)||(17324034-17324077)
[»] chr8 (2 HSPs)
chr8 (154-222)||(38388055-38388124)
chr8 (154-199)||(46101-46146)
[»] chr7 (2 HSPs)
chr7 (154-222)||(2570453-2570522)
chr7 (154-194)||(6003540-6003580)
[»] chr4 (2 HSPs)
chr4 (154-201)||(6760851-6760898)
chr4 (154-189)||(26500150-26500185)


Alignment Details
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 35847304 - 35847235
Alignment:
Q  154 taacaacagctcctcaaagaaccaacaccgccaacattgatcaattaggcagccga-agtgattttgctt 222  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||    
T  35847304 taacaacaactcctcaaagaaccaacaccgccaacatttatcaattaggcacccgatagtgattttgctt 35847235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 25362479 - 25362410
Alignment:
Q  154 taacaacagctcctcaaagaaccaacaccgccaacattgatcaattaggcagccga-agtgattttgctt 222  Q
    |||||||| ||||||||||||| ||||||||||||| |||||||||||||| |||| || ||||||||||    
T  25362479 taacaacaactcctcaaagaactaacaccgccaacagtgatcaattaggcacccgatagagattttgctt 25362410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 17218921 - 17218852
Alignment:
Q  154 taacaacagctcctcaaagaaccaacaccgccaacattgatcaattaggcagccga-agtgattttgctt 222  Q
    |||||||| ||| ||||||||||||||||||||||| ||| |||||||||| || | |||||||||||||    
T  17218921 taacaacaactcatcaaagaaccaacaccgccaacagtgaacaattaggcacccaatagtgattttgctt 17218852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 39369067 - 39369007
Alignment:
Q  154 taacaacagctcctcaaagaaccaacaccgccaacattgatcaattaggcagccgaagtga 214  Q
    ||||||||||||||| ||||||||||| |||||||| |||| ||| ||||| |||||||||    
T  39369067 taacaacagctcctccaagaaccaacatcgccaacagtgataaataaggcacccgaagtga 39369007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 42742213 - 42742276
Alignment:
Q  154 taacaacagctcctcaaagaaccaacaccgccaacattgatcaattaggcagccgaagtgatttt 218  Q
    ||||||||||||||||||||||||||||||  |||| ||| |||||||||| | |||||||||||    
T  42742213 taacaacagctcctcaaagaaccaacaccgtgaacagtga-caattaggcacctgaagtgatttt 42742276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 189
Target Start/End: Complemental strand, 1223124 - 1223089
Alignment:
Q  154 taacaacagctcctcaaagaaccaacaccgccaaca 189  Q
    |||||| |||||||||||||||||||||||||||||    
T  1223124 taacaatagctcctcaaagaaccaacaccgccaaca 1223089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 4397349 - 4397414
Alignment:
Q  158 aacagctcctcaaagaaccaacaccgccaacattgatcaattaggcagccga-agtgattttgctt 222  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||    
T  4397349 aacaactcctcaaagaaccaacaccgccaacaatgatcaattaggcacccgatagtgattttgctt 4397414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 38710154 - 38710108
Alignment:
Q  158 aacagctcctcaaagaaccaacaccgccaacattgatcaattaggca 204  Q
    ||||| |||||||||||||||||||||||||| ||||||||| ||||    
T  38710154 aacagttcctcaaagaaccaacaccgccaacagtgatcaatttggca 38710108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 37128802 - 37128865
Alignment:
Q  158 aacagctcctcaaagaaccaacaccgccaacattgatcaattaggcagccga-agtgattttgc 220  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||| |||| |||||||||||    
T  37128802 aacagctcctcaaagaaccaacaccgccaacaatgatgaattaggcacccgatagtgattttgc 37128865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 41958438 - 41958372
Alignment:
Q  154 taacaacagctcctcaaagaaccaacaccgccaacattgatcaattaggcagccga-agtgattttg 219  Q
    |||||||| || ||||||||||||||| |||||||| |||| ||||||||  |||| ||||||||||    
T  41958438 taacaacaacttctcaaagaaccaacatcgccaacagtgatgaattaggcgcccgatagtgattttg 41958372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 204
Target Start/End: Complemental strand, 45181800 - 45181750
Alignment:
Q  154 taacaacagctcctcaaagaaccaacaccgccaacattgatcaattaggca 204  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  45181800 taacaacagctcctcaaagaaccaacaccgccaacggtgatcaattaggca 45181750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 16285272 - 16285203
Alignment:
Q  154 taacaacagctcctcaaagaaccaacaccgccaacattgatcaattaggcagccga-agtgattttgctt 222  Q
    ||||||||| |||| ||||||||||||||||||||| |||| ||||||||| |||| |||||||||||||    
T  16285272 taacaacagttccttaaagaaccaacaccgccaacagtgattaattaggcacccgatagtgattttgctt 16285203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 23087717 - 23087652
Alignment:
Q  154 taacaacagctcctcaaagaaccaacaccgccaacattgatcaattaggcagccga-agtgatttt 218  Q
    |||||||||||| ||||||||||| ||||||||||| |||||||||||||| |||| |||||||||    
T  23087717 taacaacagctcatcaaagaaccatcaccgccaacaatgatcaattaggcatccgatagtgatttt 23087652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 17324034 - 17324077
Alignment:
Q  156 acaacagctcctcaaagaaccaacaccgccaacattgatcaatt 199  Q
    |||||| ||||||||||||||||||||||||||| |||||||||    
T  17324034 acaacaactcctcaaagaaccaacaccgccaacagtgatcaatt 17324077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 38388124 - 38388055
Alignment:
Q  154 taacaacagctcctcaaagaaccaacaccgccaacattgatcaattaggcagccga-agtgattttgctt 222  Q
    |||||||| |||||| |||||||||||||  ||||| |||||||||||||| |||| |||||||||||||    
T  38388124 taacaacaactcctcgaagaaccaacaccatcaacagtgatcaattaggcacccgatagtgattttgctt 38388055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 46101 - 46146
Alignment:
Q  154 taacaacagctcctcaaagaaccaacaccgccaacattgatcaatt 199  Q
    |||||||| ||||||||||||||||||| | ||||| |||||||||    
T  46101 taacaacaactcctcaaagaaccaacactgtcaacaatgatcaatt 46146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 2570522 - 2570453
Alignment:
Q  154 taacaacagctcctcaaagaaccaacaccgccaacattgatcaattaggcagccg-aagtgattttgctt 222  Q
    |||||||| | ||||||||||||||||||||||||| |||||||  ||||| ||| ||||||||||||||    
T  2570522 taacaacaacacctcaaagaaccaacaccgccaacagtgatcaaaaaggcacccgaaagtgattttgctt 2570453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 6003580 - 6003540
Alignment:
Q  154 taacaacagctcctcaaagaaccaacaccgccaacattgat 194  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  6003580 taacaacagctcctcaaagaaccaacaccgccaacagtgat 6003540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 6760898 - 6760851
Alignment:
Q  154 taacaacagctcctcaaagaaccaacaccgccaacattgatcaattag 201  Q
    |||||| ||||| ||||||||||||||||||||||| |||||||||||    
T  6760898 taacaatagctcatcaaagaaccaacaccgccaacagtgatcaattag 6760851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 189
Target Start/End: Original strand, 26500150 - 26500185
Alignment:
Q  154 taacaacagctcctcaaagaaccaacaccgccaaca 189  Q
    ||||||||||||||||||||||||||||| ||||||    
T  26500150 taacaacagctcctcaaagaaccaacaccaccaaca 26500185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University