View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_high_44 (Length: 306)
Name: NF19675_high_44
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_high_44 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 12 - 293
Target Start/End: Original strand, 4926475 - 4926756
Alignment:
| Q |
12 |
ataatactaatcttgagataaaaaacttaacaaacaaaacatactaatttacaaaaggaactannnnnnnnagcttaaaaaagtaaagtgattatcatct |
111 |
Q |
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| T |
4926475 |
ataatactaatcttgagataaaaaacttaacaaacaaaacatactaatttacaaaaggaactattttttttagcttaaaaaagtaaagtgattatcatct |
4926574 |
T |
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| Q |
112 |
taaacttcaatttgttgtggtacctgcaagtgagacttgacatgaccaatattgagtcctctcacactcattaactgaagcaccaacttgggtgttgctc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4926575 |
taaacttcaatttgttgtggtacctgcaagtgagacttgacatgaccaatattgagtcctctcacactcattaactgaagcaccaacttgggtgttgctc |
4926674 |
T |
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| Q |
212 |
ctgcatcatagttcaaccaaatattaattttcactatatatgatcattataaagtatataatcttagcacttataaacaaat |
293 |
Q |
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| T |
4926675 |
ctgcatcatagttcaaccaaatattaattttcactatatatgttcattataaagtatataatcttagcacttataaacaaat |
4926756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 213
Target Start/End: Complemental strand, 35401625 - 35401578
Alignment:
| Q |
166 |
agtcctctcacactcattaactgaagcaccaacttgggtgttgctcct |
213 |
Q |
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| T |
35401625 |
agtcctctcacattcatcaactggagaaccaacttgggtgttgctcct |
35401578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 217
Target Start/End: Complemental strand, 35848626 - 35848540
Alignment:
| Q |
131 |
gtacctgcaagtgagacttgacatgaccaatattgagtcctctcacactcattaactgaagcaccaacttgggtgttgctcctgcat |
217 |
Q |
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|||||||||| ||| |||||||||| |||| |||||||||||||| |||| | ||||||||||| ||||||||||||||||||| |
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| T |
35848626 |
gtacctgcaaatgactcttgacatgagcaatgctgagtcctctcacattcatcagttgaagcaccaatttgggtgttgctcctgcat |
35848540 |
T |
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