View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19675_high_45 (Length: 305)

Name: NF19675_high_45
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19675_high_45
NF19675_high_45
[»] chr3 (1 HSPs)
chr3 (2-290)||(47886942-47887230)


Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 2 - 290
Target Start/End: Complemental strand, 47887230 - 47886942
Alignment:
Q  2 acagataaagattgggctcaaatgcagggaaagttccttctaaatgattccccctcaaaagtagttgtttatttggaaggcccccctggaggcactgaca 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47887230 acagataaagattgggctcaaatgcagggaaagttccttctaaatgattccccctcaaaagtagttgtttatttggaaggcccccctggaggcactgaca 47887131  T
Q  102 ttcttctaaatacttttgttataaagcatgcagctaaatcaccaccttcgacacccccggattttgaggttaggctttcatcatattttctgcagattac 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47887130 ttcttctaaatacttttgttataaagcatgcagctaaatcaccaccttcgacacccccggattttgaggttaggctttcatcatattttctgcagattac 47887031  T
Q  202 tttaatttctctttacacattcattgttactcaaacacttaattgtttctatgatgccttttgttgtgtggtcgattctgtatgcttca 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47887030 tttaatttctctttacacattcattgttactcaaacacttaattgtttctatgatgccttttgttgtgtggtcgattctgtatgcttca 47886942  T

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