View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_high_46 (Length: 304)
Name: NF19675_high_46
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_high_46 |
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| [»] scaffold0468 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 14770514 - 14770799
Alignment:
| Q |
1 |
acgttataaaataccggcaaaattacctgaccaaaagatttgtgacactccacaatttgtactaattcatcaagacaccaactagattcggtgtagcttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14770514 |
acgttataaaataccggcaaaattacctgaccaaaagatttctgacactccacaatttgtactaattcatcaagacaccaactagattcggtgtagcttt |
14770613 |
T |
|
| Q |
101 |
tggagaaaacaactatagctatttgagaaacttctactgcttttaatagttgtggtcctagctctcttccctttctaagcttctcgttgtcgagaaaagt |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14770614 |
tggagaaaacaacgatagctatttgagaaacttctactgcttttaatagttgtggtcctagctctcttccctttctaagcttctcgttgtcgagaaaagt |
14770713 |
T |
|
| Q |
201 |
gttaattccggcgtttgaaagagcagcgtagagatgtgatacgatgttcttgcgtgtgtcttggcctctgaaattgatgaacacgt |
286 |
Q |
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| T |
14770714 |
gttaattccggcgtttgaaagagcagcgtagagatgtgatacgatgttcttgcgtgtgtcttggcctctgaaattgatgaacacgt |
14770799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 286
Target Start/End: Original strand, 6908639 - 6908859
Alignment:
| Q |
66 |
ttcatcaagacaccaactagattcggtgtagcttttggagaaaacaactatagctatttgagaaacttctactgcttttaatagttgtggtcctagctct |
165 |
Q |
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|||| ||||||||||||||||||| |||||| || ||||||| ||||| | ||||||||| ||| || ||| ||||||| |||| ||| || |
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| T |
6908639 |
ttcaacaagacaccaactagattctgtgtagtgttctgagaaaataactaaacatatttgagacccttgtatagctcgcaatagttctggttctacttcc |
6908738 |
T |
|
| Q |
166 |
cttccctttctaagcttctcgttgtcgagaaaagtgttaattccggcgtttgaaagagcagcgtagagatgtgatacgatgttcttgcgtgtgtcttggc |
265 |
Q |
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| T |
6908739 |
catccctttttaagcttttcatcatcaagaaaagtgttgattcccgcgtttgagagagcagcatatagatgagaaaccaggctctttcgcgtgtcttccc |
6908838 |
T |
|
| Q |
266 |
ctctgaaattgatgaacacgt |
286 |
Q |
| |
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|||||||||| |||||||||| |
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| T |
6908839 |
ctctgaaatttatgaacacgt |
6908859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 283
Target Start/End: Original strand, 7788912 - 7789026
Alignment:
| Q |
169 |
ccctttctaagcttctcgttgtcgagaaaagtgttaattccggcgtttgaaagagcagcgtagagatgtgatacgatgttcttgcgtgtgtcttggcctc |
268 |
Q |
| |
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|||||| ||||||| |||| ||| ||||||||||| ||||| | |||| |||||||| || ||||| || || | | |||| |||||||||| |||| |
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| T |
7788912 |
ccctttttaagcttttcgtcgtcaagaaaagtgttgattcccatgcttgatagagcagcatatagatgagaaaccaagctcttacgtgtgtcttcacctc |
7789011 |
T |
|
| Q |
269 |
tgaaattgatgaaca |
283 |
Q |
| |
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||||||| ||||||| |
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| T |
7789012 |
tgaaatttatgaaca |
7789026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 221
Target Start/End: Complemental strand, 15775600 - 15775418
Alignment:
| Q |
39 |
tttgtgacactccacaatttgtactaattcatcaagacaccaactagattcggtgtagcttttggagaaaacaactatagctatttgagaaacttctact |
138 |
Q |
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|||||| ||||||| |||||| | | ||||||||||||||||||||||| || |||||||||||||||| || |||||||||| ||| || | |
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| T |
15775600 |
tttgtggcactccatgatttgttcgagttcatcaagacaccaactagattgaacataatttttggagaaaacaacaatgattatttgagaaccttgtatt |
15775501 |
T |
|
| Q |
139 |
gcttttaatagttgtggtcctagctctcttccctttctaagcttctcgttgtcgagaaaagtgttaattccggcgtttgaaag |
221 |
Q |
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||| |||| || |||||| ||||| |||||||| ||| ||||| | ||| ||||||||||||||||| || |||||||| |
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| T |
15775500 |
gctcgcaataattctggtcccagctcctttcccttttcaagattctcatcgtcaagaaaagtgttaattccagcatttgaaag |
15775418 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0468 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0468
Description:
Target: scaffold0468; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 286
Target Start/End: Original strand, 9070 - 9188
Alignment:
| Q |
168 |
tccctttctaagcttctcgttgtcgagaaaagtgttaattccggcgtttgaaagagcagcgtagagatgtgatacgatgttcttgcgtgtgtcttggcct |
267 |
Q |
| |
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||||||| ||||||| || | ||| ||||||||||| ||||| ||||| | |||||||| || ||||| || || | | ||||||| ||||||| ||| |
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| T |
9070 |
tccctttttaagcttttcatcgtcaagaaaagtgttgattcccgcgttcaatagagcagcatacagatgagaaaccaagctcttgcgggtgtcttcacct |
9169 |
T |
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| Q |
268 |
ctgaaattgatgaacacgt |
286 |
Q |
| |
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| T |
9170 |
ctgaaatttatgaacacgt |
9188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 112
Target Start/End: Original strand, 3288993 - 3289035
Alignment:
| Q |
70 |
tcaagacaccaactagattcggtgtagcttttggagaaaacaa |
112 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
3288993 |
tcaagacaccaactagattcagtgtagtttttggagaaaacaa |
3289035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 218
Target Start/End: Original strand, 3270078 - 3270224
Alignment:
| Q |
72 |
aagacaccaactagattcggtgtagcttttggagaaaacaactatagctatttgagaaacttctactgcttttaatagttgtggtcctagctctcttccc |
171 |
Q |
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|||||||||||||||| | | ||||||||||||||||||| |||| || |||||||||||| |||| || |||| |||||| ||||| |||| |
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| T |
3270078 |
aagacaccaactagatgtgatatagcttttggagaaaacaatgatagaaatacgagaaacttctattgctcgcaacagttctggtcccagctcctctccc |
3270177 |
T |
|
| Q |
172 |
tttctaagcttctcgttgtcgagaaaagtgttaattccggcgtttga |
218 |
Q |
| |
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||| |||||| | || ||| ||||||||||| ||||| || ||||| |
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| T |
3270178 |
ttttcaagctttttgtcgtcaagaaaagtgttgattccagcatttga |
3270224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 3265128 - 3265169
Alignment:
| Q |
72 |
aagacaccaactagattcggtgtagcttttggagaaaacaac |
113 |
Q |
| |
|
||||||||||| ||||||||| || ||||||||||||||||| |
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|
| T |
3265128 |
aagacaccaacaagattcggtatatcttttggagaaaacaac |
3265169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 164
Target Start/End: Original strand, 7167211 - 7167308
Alignment:
| Q |
67 |
tcatcaagacaccaactagattcggtgtagcttttggagaaaacaactatagctatttgagaaacttctactgcttttaatagttgtggtcctagctc |
164 |
Q |
| |
|
|||| |||||||||||||||||| || || |||||||||||||| | |||| ||| ||||| |||||| ||| |||||||| |||||| ||||| |
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| T |
7167211 |
tcattaagacaccaactagattctgtatatcttttggagaaaacgaggatagatatatgagacccttctattgcccgtaatagttctggtcccagctc |
7167308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 286
Target Start/End: Original strand, 3395004 - 3395224
Alignment:
| Q |
66 |
ttcatcaagacaccaactagattcggtgtagcttttggagaaaacaactatagctatttgagaaacttctactgcttttaatagttgtggtcctagctct |
165 |
Q |
| |
|
||||| ||||||||||||||| | |||| |||| ||||||||||| || ||||| |||||| ||| || |||| | || || |||||| ||||| |
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|
| T |
3395004 |
ttcattaagacaccaactagaattaacgtagtttttagagaaaacaacgatggctatctgagaaccttgtattgctcgaactaattctggtccaagctcc |
3395103 |
T |
|
| Q |
166 |
cttccctttctaagcttctcgttgtcgagaaaagtgttaattccggcgtttgaaagagcagcgtagagatgtgatacgatgttcttgcgtgtgtcttggc |
265 |
Q |
| |
|
||||||| |||| ||||| | || |||||||| || ||||| |||| || |||||||| |||||||| || || | ||||||| || |||| | |
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|
| T |
3395104 |
tctccctttttaagattctcatcatcaagaaaagtattgattccagcgtctgtgagagcagcatagagatgagaaacaaaagtcttgcgagtatctttcc |
3395203 |
T |
|
| Q |
266 |
ctctgaaattgatgaacacgt |
286 |
Q |
| |
|
|||| |||||||||||||||| |
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|
| T |
3395204 |
ctctaaaattgatgaacacgt |
3395224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 13785196 - 13785160
Alignment:
| Q |
76 |
caccaactagattcggtgtagcttttggagaaaacaa |
112 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||| |
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|
| T |
13785196 |
caccaactagattcagtgtagtttttggagaaaacaa |
13785160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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