View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_high_56 (Length: 275)
Name: NF19675_high_56
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_high_56 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 29479830 - 29479589
Alignment:
| Q |
13 |
aatatgtcttcttgtgtcacataagcctatatagtgtttcatacataataaaaacatattattatatataggacattgttaatttattctttgctggtta |
112 |
Q |
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| T |
29479830 |
aatatgtcttcttgtgtcacataagcctatatagtgtttcatacataataaaaacatattattata----ggacattgttaatttattctttgctggtta |
29479735 |
T |
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| Q |
113 |
atactcattatcataaatttataaaagaatataatgacttaaaaagtggattatatgtatgtaagatgttagttacttactacaaccccatagtctaatc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29479734 |
atactcattatcataaatttataaaagaatataatgacttaaaaagtggattatatgtatgtaagatgttagttacttactacaaccccatagtctaatc |
29479635 |
T |
|
| Q |
213 |
tccttttctttccatttaaaagcacattaccagacatgataacatt |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29479634 |
tccttttctttccatttaaaagcacattaccagacatgataacatt |
29479589 |
T |
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