View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_high_64 (Length: 252)
Name: NF19675_high_64
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_high_64 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 31 - 252
Target Start/End: Original strand, 39237723 - 39237944
Alignment:
| Q |
31 |
agggacggaggaagtagtttgtagcttatgattgattatttattaggtattggctttggataagagtcgtgaatactatgaattgggattgcccatgatt |
130 |
Q |
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| T |
39237723 |
agggacggagggagtagtttgtagcttatgattgattatttattaggtattggctttggataagagtcgtgaatactatgaattgggattgcccatgatt |
39237822 |
T |
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| Q |
131 |
gaaaaagctggagtggctcataagattgacttcagacaaggacttgctctccctcttcttgatgaactccttcaagatgtacgtttgcctcatttctgat |
230 |
Q |
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| T |
39237823 |
gaaaaagctggagtggctcataagattgacttcagacaaggacttgctctccctcttcttgatgaactccttcaagatgtacgtttgcctcatttctgat |
39237922 |
T |
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| Q |
231 |
caactttatttcattattaatt |
252 |
Q |
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| T |
39237923 |
caactttatttcattattaatt |
39237944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 69 - 210
Target Start/End: Original strand, 39049539 - 39049680
Alignment:
| Q |
69 |
tttattaggtattggctttggataagagtcgtgaatactatgaattgggattgcccatgattgaaaaagctggagtggctcataagattgacttcagaca |
168 |
Q |
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| T |
39049539 |
tttattaggtgttggctttggacatgagtcgtgaatactatgagatgggattgcccattattgaaaaagctggagtggctcacaagattgactttagaca |
39049638 |
T |
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| Q |
169 |
aggacttgctctccctcttcttgatgaactccttcaagatgt |
210 |
Q |
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| T |
39049639 |
aggacctgctctccctcttcttgatcaacttcttcaagatgt |
39049680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 75 - 210
Target Start/End: Complemental strand, 39291491 - 39291356
Alignment:
| Q |
75 |
aggtattggctttggataagagtcgtgaatactatgaattgggattgcccatgattgaaaaagctggagtggctcataagattgacttcagacaaggact |
174 |
Q |
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| T |
39291491 |
aggtattggctttggacgtgagtcgtgaatactatgaactaggattgccaataattgaaaaagctagagtggctcacaaaattgattttagacaaggacc |
39291392 |
T |
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| Q |
175 |
tgctctccctcttcttgatgaactccttcaagatgt |
210 |
Q |
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| T |
39291391 |
tgctctccctctacttgatgaacttcttcaagatgt |
39291356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 69 - 244
Target Start/End: Original strand, 39055611 - 39055786
Alignment:
| Q |
69 |
tttattaggtattggctttggataagagtcgtgaatactatgaattgggattgcccatgattgaaaaagctggagtggctcataagattgacttcagaca |
168 |
Q |
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| T |
39055611 |
tttatcaggtattggctttggacgtgagtcgggaatactatgagctgggattgccaataattgaaaaagctggaattgctcacaaaattgactttagaga |
39055710 |
T |
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| Q |
169 |
aggacttgctctccctcttcttgatgaactccttcaagatgtacgtttgcctcatttctgatcaactttatttcat |
244 |
Q |
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| T |
39055711 |
aggacctgctctccctcttcttgaccaacttattcaagacgtgcgtttgcatcatttgccaccaactttatttcat |
39055786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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