View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_high_69 (Length: 244)
Name: NF19675_high_69
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_high_69 |
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| [»] chr7 (10 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 3 - 244
Target Start/End: Complemental strand, 4863847 - 4863606
Alignment:
| Q |
3 |
gattatactgtgtctataaactctgaagaaggaagctctcaaattgaaagagttaacctttcgctcaagttacaacaattaccaaagaccatgtttacaa |
102 |
Q |
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| T |
4863847 |
gattatactgtgtctataaactctgaagaaggaagctctcaaattgaaagagttaacctttcgctcaagttacaacaattaccaaagaccatgtttacaa |
4863748 |
T |
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| Q |
103 |
aataccgtgatgttacgttgaatggaatcgagatttttaaaataagcgataaaaataataatttctttggactgaatccaaaaccctttatcctatctcc |
202 |
Q |
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| T |
4863747 |
aataccgtgatgttacgttgaatggaatcgagatttttaaaataagcgataaaaataataatttctttggactgaatccaaaaccctttattctatctcc |
4863648 |
T |
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| Q |
203 |
cacagaacaaggtttaccaactgagcagtcgaagaaatcaac |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
4863647 |
cacagaacaaggtttaccaactgagcagtcgaagaaatcaac |
4863606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 33 - 188
Target Start/End: Original strand, 4784035 - 4784187
Alignment:
| Q |
33 |
ggaagctctcaaattgaaagagttaacctttcgctcaagttacaacaattaccaaagaccatgtttacaaaataccgtgatgttacgttgaatggaatcg |
132 |
Q |
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| T |
4784035 |
ggaagctctcaaattgaaaaagttaatctttcgatcaagctacaacgattaccaaaacctatgcctacggtatatcgtgatgtcacgttgaatggaattg |
4784134 |
T |
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| Q |
133 |
agatttttaaaataagcgataaaaataataatttctttggactgaatccaaaaccc |
188 |
Q |
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| T |
4784135 |
agattttgaaaataagtgataaa---aataatctctttggagtgaatccaaaaccc |
4784187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 186
Target Start/End: Original strand, 4697359 - 4697543
Alignment:
| Q |
2 |
agattatactgtgtctataaactctgaagaaggaagctctcaaattgaaagagttaacctttcgctcaagttacaacaattaccaaagac-catgtttac |
100 |
Q |
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||||||| |||||||||| ||||| |||||||||||||||||||||||||| |||| ||||| ||||| |||||| | ||| | ||| || || || |
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| T |
4697359 |
agattatgctgtgtctatgcactctcaagaaggaagctctcaaattgaaagacttaatctttcaatcaagctacaacgagcacc-aggacgtatcttcac |
4697457 |
T |
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| Q |
101 |
aaaataccgtgatgttacgttgaatggaatcgagatttttaaaataagcgataaaaataataatttctttggactgaatccaaaac |
186 |
Q |
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| T |
4697458 |
aagatacggtgatgtcacattgaatggcatcgagattttgaaaataaatgataaaaatgataatctctttggatcaaatccaaaac |
4697543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 33 - 188
Target Start/End: Original strand, 4816464 - 4816616
Alignment:
| Q |
33 |
ggaagctctcaaattgaaagagttaacctttcgctcaagttacaacaattaccaaagaccatgtttacaaaataccgtgatgttacgttgaatggaatcg |
132 |
Q |
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||||||||||||||||||| |||||| |||||| ||||| |||| | ||||||||| | ||| | | ||| |||||||| |||||||||||||| | |
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| T |
4816464 |
ggaagctctcaaattgaaaaagttaatctttcgatcaagctacatcgattaccaaaacctatgccttcggtatatcgtgatgtcacgttgaatggaattg |
4816563 |
T |
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| Q |
133 |
agatttttaaaataagcgataaaaataataatttctttggactgaatccaaaaccc |
188 |
Q |
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| T |
4816564 |
agattttgaaaataagtgataaa---aataatctctttggagtgaatccaaaaccc |
4816616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 164
Target Start/End: Complemental strand, 4672582 - 4672440
Alignment:
| Q |
22 |
actctgaagaaggaagctctcaaattgaaagagttaacctttcgctcaagttacaacaattaccaaagaccatgtttacaaaataccgtgatgttacgtt |
121 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||||| | ||| | |||| | || |||| | | | |||||| || ||||||| || || |
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| T |
4672582 |
actctcaagaaggaagctctcaaattgaaagagttaatctttctattaagcttcaaccactaacaaatatgaactacacaaaagacagtgatgtcacatt |
4672483 |
T |
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| Q |
122 |
gaatggaatcgagatttttaaaataagcgataaaaataataat |
164 |
Q |
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| T |
4672482 |
aaatggaatcgagattttcaaagtaagtgataaaaataataat |
4672440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 4630833 - 4630791
Alignment:
| Q |
22 |
actctgaagaaggaagctctcaaattgaaagagttaacctttc |
64 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
4630833 |
actctcaagaaggaagctctcaaattgaaagagttaatctttc |
4630791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 4653426 - 4653390
Alignment:
| Q |
22 |
actctgaagaaggaagctctcaaattgaaagagttaa |
58 |
Q |
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| T |
4653426 |
actctgaagaaggaagcactcaaattgaaagagttaa |
4653390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 161
Target Start/End: Original strand, 4712275 - 4712403
Alignment:
| Q |
33 |
ggaagctctcaaattgaaagagttaacctttcgctcaagttacaacaattaccaaagaccatgtttacaaaataccgtgatgttacgttgaatggaatcg |
132 |
Q |
| |
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||||||||| |||||||||||||||||||||| | ||| | |||| | |||| | | || | ||||| ||||||||||| | |||||||||| | |
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| T |
4712275 |
ggaagctctgaaattgaaagagttaacctttcaattaagcttcaacgagaaccagaaagtatctacacaaattaccgtgatgtcataatgaatggaattg |
4712374 |
T |
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| Q |
133 |
agatttttaaaataagcgataaaaataat |
161 |
Q |
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||||||| |||||||| |||||||||||| |
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| T |
4712375 |
agattttcaaaataagtgataaaaataat |
4712403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 160
Target Start/End: Complemental strand, 4636753 - 4636631
Alignment:
| Q |
38 |
ctctcaaattgaaagagttaacctttcgctcaagttacaacaattaccaaagaccatgtttacaaaataccgtgatgttacgttgaatggaatcgagatt |
137 |
Q |
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||||||||||||||||||| | ||||| ||||| | |||| ||||||| | ||||| |||| ||| |||||||||| | ||||||||||||||| |
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| T |
4636753 |
ctctcaaattgaaagagtttatctttcaatcaagcttcaacgattaccacaacccatgcctacagtatatcgtgatgttattcttaatggaatcgagatt |
4636654 |
T |
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| Q |
138 |
tttaaaataagcgataaaaataa |
160 |
Q |
| |
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|| ||||| || |||||| |||| |
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| T |
4636653 |
ttcaaaattagtgataaatataa |
4636631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 4643494 - 4643454
Alignment:
| Q |
120 |
ttgaatggaatcgagatttttaaaataagcgataaaaataa |
160 |
Q |
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| T |
4643494 |
ttgaatggaatcgagattttaaaaataagtgacaaaaataa |
4643454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 18926009 - 18926069
Alignment:
| Q |
100 |
caaaataccgtgatgttacgttgaatggaatcgagatttttaaaataagcgataaaaataa |
160 |
Q |
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||||||||||| |||| || |||||||| ||||||||||| |||||||| || |||||||| |
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| T |
18926009 |
caaaataccgtaatgtcacattgaatgggatcgagattttgaaaataagtgacaaaaataa |
18926069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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