View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_high_7 (Length: 745)
Name: NF19675_high_7
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 620; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 16 - 735
Target Start/End: Original strand, 22955727 - 22956446
Alignment:
| Q |
16 |
gttcctgcgactttaaagacttccatcacaaatgttttaggggttcaatatgtgatcgatacatgtaagtatttgagactttcgtccatgatcagtagag |
115 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
22955727 |
gttcctgtgactttaaagacttccatcacaaatgttttaggggttcaatatgtgatcggtacatgtaagtatttgagactttcgtccatgatcagtagag |
22955826 |
T |
|
| Q |
116 |
atagaataacaacttattcttataacaaggctgaaagtttcaaactgatccaaactctctagtttctcgttgtataaagctcggtacttccccactggaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22955827 |
atagaataacaacttattcttataacaaggctgaaagtttcaaactgatccaaactctctagtttctcgttatataaagctcggtacttccccactggaa |
22955926 |
T |
|
| Q |
216 |
gttatgtcacagccaacttgggtcacaatatgagttgtgtggcggagtatcttgtgtgctcgatttattgttcgatgtggtgcgaggcggtgcatttggt |
315 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||| ||||||| |
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| T |
22955927 |
gttatgtcacatccaacttgggtcacaatatgagttgtgtggcggagtatcttgtgtgctcgatttattgttagatacggcgcgaggcggtgaatttggt |
22956026 |
T |
|
| Q |
316 |
gaggtaattctatttgcatccttgatgtacagtggcttttgaatgatggtaatattctaggggcacatgacgttcataattgtttatgtgaatagcctga |
415 |
Q |
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|| | |||||||| |||| |||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22956027 |
cagatgattctattcacatcattgatgaaccgtggcttttgaatgctggtaatattctaggggcacatgacgttcataattgtttatgtgaatagcctga |
22956126 |
T |
|
| Q |
416 |
ttgatacttcatgtaagaattggaaccatgatttggttcagtaggttttaagcggcaacaaagattgtgctatttttggtaatggtgtgcaattccctac |
515 |
Q |
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| T |
22956127 |
ttgatacttcatgtaagaattggaaccatgatttggttcagtaggttttaagcggcaacaaagattgtgctattttcggtaatggtgtgcaattccctac |
22956226 |
T |
|
| Q |
516 |
acgttgtgttagttgaatctctccctgtttttgagtatttggaagcacatgaaccttaaatcatggcaagatgttaatgagctatgcacacaagtggtag |
615 |
Q |
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| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22956227 |
aagttgtgttagctgaatctctccctgtttttgagtatttggaagcacatgaaccttaaatcatggcaagatgttaatgagctatgcacacaagtggtag |
22956326 |
T |
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| Q |
616 |
agcgagttcataatttaatagagaaatgtccataagatagttgctcgttgtcatcattctcacgttgataatgtcgacttcatacttgattcaaaaacaa |
715 |
Q |
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| T |
22956327 |
agcgagttcatcatttaatagagaaatgtccttaagatagttgctcgttgtcatcattctcatgttgataatgtcgacttcatgcttgattcaaaaacaa |
22956426 |
T |
|
| Q |
716 |
tttcgaatcctttccatatt |
735 |
Q |
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|||||||||||||||||||| |
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| T |
22956427 |
tttcgaatcctttccatatt |
22956446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 27 - 136
Target Start/End: Original strand, 9281984 - 9282093
Alignment:
| Q |
27 |
tttaaagacttccatcacaaatgttttaggggttcaatatgtgatcgatacatgtaagtatttgagactttcgtccatgatcagtagagatagaataaca |
126 |
Q |
| |
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||||||||||||||||||| || |||| |||||||||| | || | | |||||||||||||||| ||||| ||||||||||| | |||||||||| |||| |
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| T |
9281984 |
tttaaagacttccatcacatatattttgggggttcaatttatgttgggtacatgtaagtatttgggacttccgtccatgatcggcagagatagaacaaca |
9282083 |
T |
|
| Q |
127 |
acttattctt |
136 |
Q |
| |
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|||| ||||| |
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|
| T |
9282084 |
actttttctt |
9282093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 543 - 614
Target Start/End: Complemental strand, 6979859 - 6979788
Alignment:
| Q |
543 |
tttttgagtatttggaagcacatgaaccttaaatcatggcaagatgttaatgagctatgcacacaagtggta |
614 |
Q |
| |
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|||| ||||||||||||| ||||||| ||||||| |||| ||||||||| |||||||||| ||||||||||| |
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| T |
6979859 |
ttttggagtatttggaagaacatgaatcttaaattatgggaagatgttagtgagctatgcgcacaagtggta |
6979788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 570 - 617
Target Start/End: Original strand, 33168875 - 33168922
Alignment:
| Q |
570 |
cttaaatcatggcaagatgttaatgagctatgcacacaagtggtagag |
617 |
Q |
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|||||| ||||||| |||||||||||||||||| | |||||||||||| |
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| T |
33168875 |
cttaaaccatggcacgatgttaatgagctatgcgcgcaagtggtagag |
33168922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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