View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19675_high_80 (Length: 231)

Name: NF19675_high_80
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19675_high_80
NF19675_high_80
[»] chr1 (18 HSPs)
chr1 (3-148)||(8470696-8470841)
chr1 (3-145)||(17676853-17676998)
chr1 (3-145)||(17785694-17785839)
chr1 (3-139)||(2475666-2475805)
chr1 (3-139)||(48385722-48385861)
chr1 (11-145)||(31470637-31470774)
chr1 (11-145)||(45241489-45241626)
chr1 (3-145)||(38837230-38837375)
chr1 (3-132)||(47298091-47298223)
chr1 (3-145)||(33166638-33166783)
chr1 (3-145)||(48406779-48406924)
chr1 (3-102)||(18318295-18318397)
chr1 (5-98)||(51522738-51522834)
chr1 (171-216)||(48406708-48406753)
chr1 (177-216)||(8470628-8470667)
chr1 (105-148)||(51522670-51522713)
chr1 (3-64)||(10265927-10265988)
chr1 (105-145)||(18318418-18318458)
[»] chr5 (9 HSPs)
chr5 (3-145)||(30646404-30646549)
chr5 (3-139)||(32973897-32974036)
chr5 (3-145)||(29617068-29617213)
chr5 (3-139)||(27945011-27945150)
chr5 (3-134)||(40891186-40891320)
chr5 (11-145)||(4579458-4579595)
chr5 (3-145)||(34710452-34710597)
chr5 (171-216)||(30646575-30646620)
chr5 (171-216)||(29617239-29617284)
[»] chr4 (16 HSPs)
chr4 (3-145)||(33606436-33606581)
chr4 (4-134)||(36657899-36658032)
chr4 (11-145)||(53181978-53182115)
chr4 (3-139)||(3530802-3530941)
chr4 (3-139)||(3615791-3615930)
chr4 (3-139)||(8994143-8994282)
chr4 (3-139)||(13112921-13113060)
chr4 (11-145)||(2212830-2212967)
chr4 (3-145)||(34435076-34435221)
chr4 (3-134)||(16172394-16172528)
chr4 (11-145)||(46915024-46915161)
chr4 (171-216)||(16172565-16172610)
chr4 (3-63)||(28446713-28446773)
chr4 (105-145)||(28446628-28446668)
chr4 (184-216)||(33606362-33606394)
chr4 (184-216)||(53182157-53182189)
[»] chr7 (8 HSPs)
chr7 (3-145)||(26814516-26814661)
chr7 (3-139)||(36520886-36521025)
chr7 (3-133)||(32127786-32127919)
chr7 (11-145)||(22193665-22193802)
chr7 (3-139)||(22659304-22659443)
chr7 (171-216)||(22659227-22659272)
chr7 (184-216)||(26814442-26814474)
chr7 (184-216)||(32127973-32128005)
[»] chr6 (11 HSPs)
chr6 (3-145)||(8221555-8221700)
chr6 (3-145)||(24917156-24917301)
chr6 (11-145)||(17958845-17958982)
chr6 (11-145)||(634119-634256)
chr6 (11-145)||(6377977-6378114)
chr6 (3-145)||(18641638-18641783)
chr6 (3-132)||(34840873-34841005)
chr6 (3-102)||(24114549-24114644)
chr6 (105-148)||(24114485-24114528)
chr6 (182-216)||(8221490-8221524)
chr6 (184-216)||(24917330-24917362)
[»] chr3 (22 HSPs)
chr3 (3-145)||(33751013-33751158)
chr3 (3-139)||(33188611-33188750)
chr3 (3-139)||(6045875-6046014)
chr3 (3-139)||(30416003-30416142)
chr3 (3-145)||(26157642-26157788)
chr3 (4-139)||(50019453-50019591)
chr3 (11-145)||(17468865-17469002)
chr3 (11-145)||(25788255-25788392)
chr3 (3-145)||(30689368-30689513)
chr3 (11-145)||(42598910-42599047)
chr3 (3-139)||(10425199-10425338)
chr3 (11-145)||(25830212-25830349)
chr3 (3-145)||(33935626-33935771)
chr3 (11-145)||(47146722-47146859)
chr3 (11-145)||(51429323-51429460)
chr3 (3-139)||(42563367-42563506)
chr3 (3-102)||(43474886-43474987)
chr3 (4-100)||(21227611-21227710)
chr3 (15-103)||(21230063-21230155)
chr3 (109-145)||(21230179-21230215)
chr3 (184-216)||(33935552-33935584)
chr3 (184-216)||(51429249-51429281)
[»] chr8 (9 HSPs)
chr8 (3-145)||(27359514-27359659)
chr8 (3-145)||(27368871-27369016)
chr8 (3-139)||(1955826-1955965)
chr8 (11-145)||(35100846-35100983)
chr8 (3-139)||(30530169-30530308)
chr8 (3-145)||(17744021-17744166)
chr8 (3-145)||(15055998-15056143)
chr8 (3-115)||(13816518-13816633)
chr8 (171-216)||(15055928-15055973)
[»] chr2 (9 HSPs)
chr2 (3-139)||(7586076-7586215)
chr2 (3-139)||(31185781-31185920)
chr2 (11-145)||(9073467-9073604)
chr2 (11-145)||(30820164-30820301)
chr2 (3-145)||(31205496-31205641)
chr2 (11-145)||(8854448-8854585)
chr2 (11-145)||(12857328-12857465)
chr2 (3-102)||(4278561-4278663)
chr2 (171-216)||(4278429-4278474)
[»] scaffold0004 (2 HSPs)
scaffold0004 (3-145)||(105226-105372)
scaffold0004 (184-216)||(105152-105184)
[»] scaffold1240 (1 HSPs)
scaffold1240 (3-125)||(255-380)
[»] scaffold0658 (1 HSPs)
scaffold0658 (3-134)||(6664-6798)
[»] scaffold0007 (1 HSPs)
scaffold0007 (14-103)||(166874-166966)


Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 3 - 148
Target Start/End: Complemental strand, 8470841 - 8470696
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcaggtagtggatctaagagatctcacga 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  8470841 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttggctcaggtagcggatctaagagatctcacga 8470742  T
Q  103 ggactctgtaggatctagtgctcgtccaatggataggaaggcaact 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  8470741 ggactctgtaggatctagtgctcgtccaatggataggaaggcaact 8470696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 3 - 145
Target Start/End: Original strand, 17676853 - 17676998
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||||||||||||| | ||||||||||||||||||| |||||||||||||| | |||||||||||||  |||||   ||||||| |||||||||||||    
T  17676853 ctttaaaggaagaatggcgcgctctccatgatcaaccacgttatggtagtcaaatgggaggaaatgttgggtcaggaagtagtggaactaagagatctca 17676952  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||    
T  17676953 cgaggactctgtaggatctagtgctcgtccaatgggtagggaggca 17676998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 17785839 - 17785694
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcaggtagt---ggatctaagagatctca 99  Q
    ||||||| |||||||||||| |||||| |||||||||| |||||||||||||| | |||||||||||||  ||||| |||   |||||||||||||||||    
T  17785839 ctttaaatgaagaatgacacactctccgtgatcaaccacgttatggtagtcaaatgggaggaaatgttgggtcaggaagtaatggatctaagagatctca 17785740  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||    
T  17785739 cgaggactctgtaggatctagtgctcgtccaatgggtagggaggca 17785694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 2475666 - 2475805
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||| ||||||||| | ||||||||  ||||||||| | |||||||||||||| ||||||||||||||||||||   ||||||||||||||||||| |    
T  2475666 ctttaatggaagaatggcgcgctctccgagatcaaccacggtatggtagtcaagtgggaggaaatgttgactcaggaagtagtggatctaagagatctta 2475765  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggatagg 139  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  2475766 cgaggactctgtaggatctagtgctcgtccaatgggtagg 2475805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 48385722 - 48385861
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||| ||||||||| | ||||||||  ||||||||| | |||||||||||||| ||||||||||||||||||||   ||||||||||||||||||| |    
T  48385722 ctttaatggaagaatggcgcgctctccgagatcaaccacggtatggtagtcaagtgggaggaaatgttgactcaggaagtagtggatctaagagatctta 48385821  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggatagg 139  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  48385822 cgaggactctgtaggatctagtgctcgtccaatgggtagg 48385861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 31470774 - 31470637
Alignment:
Q  11 gaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctcacgaggact 107  Q
    |||||||| |||||||||| |||||||||| |||||||||||||  | |||||||||||||  |||||   |||||||||||||||||||||||||||||    
T  31470774 gaagaatggcacgctctccgtgatcaaccacgttatggtagtcagatgggaggaaatgttgggtcagggagtagtggatctaagagatctcacgaggact 31470675  T
Q  108 ctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  31470674 ctgtaggatctagtgctcgtccaatgggtagggaggca 31470637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 45241626 - 45241489
Alignment:
Q  11 gaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctcacgaggact 107  Q
    |||||||| |||||||||| |||||||||| |||||||||||||  | |||||||||||||  |||||   |||||||||||||||||||||||||||||    
T  45241626 gaagaatggcacgctctccgtgatcaaccacgttatggtagtcagatgggaggaaatgttgggtcagggagtagtggatctaagagatctcacgaggact 45241527  T
Q  108 ctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  45241526 ctgtaggatctagtgctcgtccaatgggtagggaggca 45241489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 145
Target Start/End: Original strand, 38837230 - 38837375
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||||||||||||| | |||||||| |||||||||| || ||||||||||| | |||||||||||||  |||||   |||||||||||||||||||||    
T  38837230 ctttaaaggaagaatgccgcgctctccgtgatcaaccacgtcatggtagtcaaatgggaggaaatgttgggtcaggaaatagtggatctaagagatctca 38837329  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    || |||||| ||||||||||||||||||||||||| |||| |||||    
T  38837330 cggggactcagtaggatctagtgctcgtccaatgggtagggaggca 38837375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 3 - 132
Target Start/End: Original strand, 47298091 - 47298223
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    ||||||||||||||||||| ||||||| |||||||||| ||||||||||| || | |||||||||||||  |||||   |||||||||||||||||||||    
T  47298091 ctttaaaggaagaatgacatgctctccgtgatcaaccacgttatggtagttaaatgggaggaaatgttgtgtcaggaagtagtggatctaagagatctca 47298190  T
Q  100 cgaggactctgtaggatctagtgctcgtccaat 132  Q
    ||| ||||||||| |||||||||||||||||||    
T  47298191 cgacgactctgtaagatctagtgctcgtccaat 47298223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 33166783 - 33166638
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||||||||||||| | |||||||| |||||||||| |||||||||||||| |  ||||||||| ||  | |||   |||||||||||||||||||||    
T  33166783 ctttaaaggaagaatggcgcgctctccgtgatcaaccacgttatggtagtcaaatgagaggaaatgctgggttaggaagtagtggatctaagagatctca 33166684  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    ||| ||||||||||||||||||||||||||||||| |||| |||||    
T  33166683 cgatgactctgtaggatctagtgctcgtccaatgggtagggaggca 33166638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 48406924 - 48406779
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||||||||||||| |||||||||   ||||||||| | |||||||||||| | ||||||||||||||||| ||   ||||||||||||||||| | |    
T  48406924 ctttaaaggaagaatggcacgctctctgagatcaaccacggtatggtagtcaaatgggaggaaatgttgactctggaagtagtggatctaagagatttta 48406825  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    ||| |||||||||||||||||||||||| |||||| |||| |||||    
T  48406824 cgatgactctgtaggatctagtgctcgttcaatgggtagggaggca 48406779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 102
Target Start/End: Original strand, 18318295 - 18318397
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcag---gtagtggatctaagagatctca 99  Q
    |||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||   ||||||||||||||||||||||    
T  18318295 ctttaatggaagaatggcacgctctccgtgatcaaccatgttatggtagtcaagtaggaggaaatattggctcaggaagtagtggatctaagagatctca 18318394  T
Q  100 cga 102  Q
    |||    
T  18318395 cga 18318397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 51522834 - 51522738
Alignment:
Q  5 ttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcag---gtagtggatctaagagatctc 98  Q
    |||| ||||||||| ||||||||| ||||||||||| ||||||||||| |||||||||||| | ||| |||||   |||||||||||||||||||||    
T  51522834 ttaatggaagaatgtcacgctctctatgatcaaccacgttatggtagttaagtaggaggaagtattggctcaggaagtagtggatctaagagatctc 51522738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 48406753 - 48406708
Alignment:
Q  171 gcaacgacgataccttggagaaggtggaaaaggagtgggttcaatt 216  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||    
T  48406753 gcaaggacgagaccttggagaaggtggaaaaggagtgggttcaatt 48406708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 8470667 - 8470628
Alignment:
Q  177 acgataccttggagaaggtggaaaaggagtgggttcaatt 216  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  8470667 acgataccttggagaagacggaaaaggagtgggttcaatt 8470628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 148
Target Start/End: Complemental strand, 51522713 - 51522670
Alignment:
Q  105 actctgtaggatctagtgctcgtccaatggataggaaggcaact 148  Q
    ||||| |||||||||||||||||||||||| |||| ||||||||    
T  51522713 actctataggatctagtgctcgtccaatgggtagggaggcaact 51522670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 10265927 - 10265988
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggagga 64  Q
    ||||||| |||||||| | ||||||||  ||||||||| |||||||||||||| | ||||||    
T  10265927 ctttaaatgaagaatggcgcgctctccgagatcaaccacgttatggtagtcaaatgggagga 10265988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 18318418 - 18318458
Alignment:
Q  105 actctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    |||||||||||||||||||||||||||| | |||| |||||    
T  18318418 actctgtaggatctagtgctcgtccaattggtagggaggca 18318458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 3 - 145
Target Start/End: Original strand, 30646404 - 30646549
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcag---gtagtggatctaagagatctca 99  Q
    ||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  30646404 ctttaaaggaagaatgacacgctctctgtgatcaaccacgttatggtagtcaagtaggaggaaatgttgactcaggaagtagtggatctaagagatctca 30646503  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    | ||||||||||||||||||||||||||||||||| |||| |||||    
T  30646504 caaggactctgtaggatctagtgctcgtccaatgggtagggaggca 30646549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 32973897 - 32974036
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||| ||||||||| | ||||||||  ||||||||| | |||||||||||||| ||||||||||||||||||||   ||||||||||||||||||| |    
T  32973897 ctttaatggaagaatggcgcgctctccgagatcaaccacggtatggtagtcaagtgggaggaaatgttgactcaggaagtagtggatctaagagatctta 32973996  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggatagg 139  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32973997 cgaggactctgtaggatctagtgctcgtccaatggatagg 32974036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 145
Target Start/End: Original strand, 29617068 - 29617213
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||||||||||||||| ||||||||  ||||||||||| |||||||||||| | |||| |||||||||||||||   ||||||||||||||||||| |    
T  29617068 ctttaaaggaagaatgacgcgctctccgagatcaaccatggtatggtagtcaaatgggagaaaatgttgactcaggaagtagtggatctaagagatctta 29617167  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    |||||||||||||||||||||||||| |||||||| |||| |||||    
T  29617168 cgaggactctgtaggatctagtgctcatccaatgggtagggaggca 29617213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 139
Target Start/End: Complemental strand, 27945150 - 27945011
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||| ||||||||| | ||||||||  ||||||||| | |||||||||||||| ||||||||||||||||||||   ||||||||||||||||||| |    
T  27945150 ctttaatggaagaatggcgcgctctccgagatcaaccacggtatggtagtcaagtgggaggaaatgttgactcaggaagtagtggatctaagagatctta 27945051  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggatagg 139  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  27945050 cgaggactctgtaggatctagtgctcgtccaatgggtagg 27945011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 134
Target Start/End: Complemental strand, 40891320 - 40891186
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||| ||||||||| | ||||||||  ||||||||| | |||||||||||||| ||||||||||||||||||||   ||||||||||||||||||| |    
T  40891320 ctttaatggaagaatggcgcgctctccgagatcaaccacggtatggtagtcaagtgggaggaaatgttgactcaggaagtagtggatctaagagatctta 40891221  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatgg 134  Q
    |||||||||||||||||||||||||||||||||||    
T  40891220 cgaggactctgtaggatctagtgctcgtccaatgg 40891186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 4579595 - 4579458
Alignment:
Q  11 gaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctcacgaggact 107  Q
    |||||||| |||||||||| |||||||||| |||||||||||||  | |||||||||||||  |||||   |||||||||||||||||||||||||||||    
T  4579595 gaagaatggcacgctctccgtgatcaaccacgttatggtagtcagatgggaggaaatgttgggtcagggagtagtggatctaagagatctcacgaggact 4579496  T
Q  108 ctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  4579495 ctgtaggatctagtgctcgtccaatgggtagggaggca 4579458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 34710597 - 34710452
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||||||||||||||| || |||||  ||||||||| |||||| ||||||  | |||||||||||||  ||| |   |||||||||||||||||||||    
T  34710597 ctttaaaggaagaatgacgcgttctccgcgatcaaccacgttatgatagtcagatgggaggaaatgttgggtcaagaagtagtggatctaagagatctca 34710498  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||    
T  34710497 cgaggactctgtaggatctagtgctcgtccaatgggtagggaggca 34710452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 30646575 - 30646620
Alignment:
Q  171 gcaacgacgataccttggagaaggtggaaaaggagtgggttcaatt 216  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||    
T  30646575 gcaaggacgagaccttggagaaggtggaaaaggagtgggttcaatt 30646620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 29617239 - 29617284
Alignment:
Q  171 gcaacgacgataccttggagaaggtggaaaaggagtgggttcaatt 216  Q
    |||| ||||| || ||||||||||||||||||||||||||||||||    
T  29617239 gcaaggacgagacattggagaaggtggaaaaggagtgggttcaatt 29617284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 33606581 - 33606436
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcag---gtagtggatctaagagatctca 99  Q
    |||||||||||||||| |||||||||| |||||||||| |||||||||||||| | |||||||||||||  ||||   ||||||||||||||||||||||    
T  33606581 ctttaaaggaagaatggcacgctctccgtgatcaaccacgttatggtagtcaaatgggaggaaatgttgggtcagaaagtagtggatctaagagatctca 33606482  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  33606481 cgaggactctgtaggatctagtgctcgtccaatggatagggaggca 33606436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 36658032 - 36657899
Alignment:
Q  4 tttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctcac 100  Q
    ||||||||||||||||||| |||||| |||||||||| |||||||||||||| | |||||||||||||  |||||   |||||||||||||| |||||||    
T  36658032 tttaaaggaagaatgacacactctccgtgatcaaccacgttatggtagtcaaatgggaggaaatgttgggtcaggaaatagtggatctaagatatctcac 36657933  T
Q  101 gaggactctgtaggatctagtgctcgtccaatgg 134  Q
    ||||||||||||||||||||||||||||||||||    
T  36657932 gaggactctgtaggatctagtgctcgtccaatgg 36657899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 53181978 - 53182115
Alignment:
Q  11 gaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctcacgaggact 107  Q
    |||||||| |||||||||| |||||||||| |||||||||||||  | |||||||||||||  |||||   |||||||||||||||||||||||||||||    
T  53181978 gaagaatggcacgctctccgtgatcaaccacgttatggtagtcagatgggaggaaatgttgggtcagggagtagtggatctaagagatctcacgaggact 53182077  T
Q  108 ctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    |||||||||||||||||||||||||||||||| |||||    
T  53182078 ctgtaggatctagtgctcgtccaatggatagggaggca 53182115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 3530802 - 3530941
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||| ||||||||| | ||||||||  ||||||||| | |||||||||||||| ||||||||||||||||||||   ||||||||||||||||||| |    
T  3530802 ctttaatggaagaatggcgcgctctccgagatcaaccacggtatggtagtcaagtgggaggaaatgttgactcaggaagtagtggatctaagagatctta 3530901  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggatagg 139  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  3530902 cgaggactctgtaggatctagtgctcgtccaatgggtagg 3530941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 3615791 - 3615930
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||| ||||||||| | ||||||||  ||||||||| | |||||||||||||| ||||||||||||||||||||   ||||||||||||||||||| |    
T  3615791 ctttaatggaagaatggcgcgctctccgagatcaaccacggtatggtagtcaagtgggaggaaatgttgactcaggaagtagtggatctaagagatctta 3615890  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggatagg 139  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  3615891 cgaggactctgtaggatctagtgctcgtccaatgggtagg 3615930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 139
Target Start/End: Complemental strand, 8994282 - 8994143
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||| ||||||||| | ||||||||  ||||||||| | |||||||||||||| ||||||||||||||||||||   ||||||||||||||||||| |    
T  8994282 ctttaatggaagaatggcgcgctctccgagatcaaccacggtatggtagtcaagtgggaggaaatgttgactcaggaagtagtggatctaagagatctta 8994183  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggatagg 139  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  8994182 cgaggactctgtaggatctagtgctcgtccaatgggtagg 8994143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 139
Target Start/End: Complemental strand, 13113060 - 13112921
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||| ||||||||| | ||||||||  ||||||||| | |||||||||||||| ||||||||||||||||||||   ||||||||||||||||||| |    
T  13113060 ctttaatggaagaatggcgcgctctccgagatcaaccacggtatggtagtcaagtgggaggaaatgttgactcaggaagtagtggatctaagagatctta 13112961  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggatagg 139  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  13112960 cgaggactctgtaggatctagtgctcgtccaatgggtagg 13112921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 2212830 - 2212967
Alignment:
Q  11 gaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctcacgaggact 107  Q
    |||||||| |||||||||| |||||||||| |||||||||||||  | |||||||||||||  |||||   |||||||||||||||||||||||||||||    
T  2212830 gaagaatggcacgctctccgtgatcaaccacgttatggtagtcagatgggaggaaatgttgggtcagggagtagtggatctaagagatctcacgaggact 2212929  T
Q  108 ctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  2212930 ctgtaggatctagtgctcgtccaatgggtagggaggca 2212967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 145
Target Start/End: Original strand, 34435076 - 34435221
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcag---gtagtggatctaagagatctca 99  Q
    |||||||||||||||| |||||||||| |||||||| | |||||||||||||  | |||||||||||||  ||||   ||||||||||||||||||||||    
T  34435076 ctttaaaggaagaatgtcacgctctccgtgatcaacgacgttatggtagtcatatgggaggaaatgttgggtcagaaagtagtggatctaagagatctca 34435175  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    |||||||||||||||||||||| |||||||||||| |||| |||||    
T  34435176 cgaggactctgtaggatctagtactcgtccaatgggtagggaggca 34435221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 134
Target Start/End: Original strand, 16172394 - 16172528
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||||||||||||| | |||||| |  ||||||||| | |||||||||||| | ||||||||||||||||| ||   ||||||||||||||||||| |    
T  16172394 ctttaaaggaagaatggcgcgctctgcgagatcaaccacggtatggtagtcaaatgggaggaaatgttgactcgggaagtagtggatctaagagatctta 16172493  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatgg 134  Q
    |||||||||||||||||||||||||||| ||||||    
T  16172494 cgaggactctgtaggatctagtgctcgttcaatgg 16172528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 46915024 - 46915161
Alignment:
Q  11 gaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctcacgaggact 107  Q
    |||||||| |||||||||| | |||||||| ||||||||||||   | |||||||||||||  |||||   ||||||||||| |||||||||||||||||    
T  46915024 gaagaatggcacgctctccgtaatcaaccacgttatggtagtctgatgggaggaaatgttgggtcaggaagtagtggatctaggagatctcacgaggact 46915123  T
Q  108 ctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  46915124 ctgtaggatctagtgctcgtccaatgggtagggaggca 46915161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 16172565 - 16172610
Alignment:
Q  171 gcaacgacgataccttggagaaggtggaaaaggagtgggttcaatt 216  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||    
T  16172565 gcaaggacgagaccttggagaaggtggaaaaggagtgggttcaatt 16172610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 28446773 - 28446713
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggagg 63  Q
    |||||| |||||||||||||||||| | |||| |||||  |||||||||||||||||||||    
T  28446773 ctttaatggaagaatgacacgctcttcgtgataaaccacattatggtagtcaagtaggagg 28446713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 28446668 - 28446628
Alignment:
Q  105 actctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    ||||| |||||||||||||||||||||||| ||||||||||    
T  28446668 actctataggatctagtgctcgtccaatgggtaggaaggca 28446628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 33606394 - 33606362
Alignment:
Q  184 cttggagaaggtggaaaaggagtgggttcaatt 216  Q
    ||||||| |||||||||||||||||||||||||    
T  33606394 cttggaggaggtggaaaaggagtgggttcaatt 33606362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 53182157 - 53182189
Alignment:
Q  184 cttggagaaggtggaaaaggagtgggttcaatt 216  Q
    ||||||| |||||||||||||||||||||||||    
T  53182157 cttggaggaggtggaaaaggagtgggttcaatt 53182189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 26814661 - 26814516
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||||||||||||| | ||||||||||||||||||| |||||||||||||| | |||||||||||||  |||||   |||||||||||||||||||||    
T  26814661 ctttaaaggaagaatggcgcgctctccatgatcaaccacgttatggtagtcaaatgggaggaaatgttgggtcaggaagtagtggatctaagagatctca 26814562  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||    
T  26814561 cgaggactctgtaggatctagtgctcgtccaatgggtagggaggca 26814516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 139
Target Start/End: Complemental strand, 36521025 - 36520886
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||| ||||||||| | ||||||||  ||||||||| | |||||||||||||| ||||||||||||||||||||   ||||||||||||||||||| |    
T  36521025 ctttaatggaagaatggcgcgctctccgagatcaaccacggtatggtagtcaagtgggaggaaatgttgactcaggaagtagtggatctaagagatctta 36520926  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggatagg 139  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  36520925 cgaggactctgtaggatctagtgctcgtccaatgggtagg 36520886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 133
Target Start/End: Original strand, 32127786 - 32127919
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||||||||||||| | |||||||| ||||||||||||||||||||| ||| | |||||||||||||  |||||   |||||||||||||||||||||    
T  32127786 ctttaaaggaagaatggcgcgctctccgtgatcaaccatgttatggtagccaaatgggaggaaatgttgggtcaggaagtagtggatctaagagatctca 32127885  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatg 133  Q
    ||||||||||||| ||||||||||||||||||||    
T  32127886 cgaggactctgtaagatctagtgctcgtccaatg 32127919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 22193802 - 22193665
Alignment:
Q  11 gaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctcacgaggact 107  Q
    |||||||| |||||||||| |||||||||| |||||||||||||  | ||||||||||| |  |||||   |||||||||||||||||||||||||||||    
T  22193802 gaagaatggcacgctctccgtgatcaaccacgttatggtagtcagatgggaggaaatgtagggtcagggagtagtggatctaagagatctcacgaggact 22193703  T
Q  108 ctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  22193702 ctgtaggatctagtgctcgtccaatgggtagggaggca 22193665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 139
Target Start/End: Complemental strand, 22659443 - 22659304
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcaggtagt---ggatctaagagatctca 99  Q
    ||||||||||||||||   ||||||||  ||||||||| | |||||||||||| | |||||||||||||||||||| |||   ||||||||||||||| |    
T  22659443 ctttaaaggaagaatggtgcgctctccgagatcaaccacggtatggtagtcaaatgggaggaaatgttgactcaggaagtattggatctaagagatctta 22659344  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggatagg 139  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  22659343 cgaggactctgtaggatctagtgctcgtccaatgggtagg 22659304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 22659272 - 22659227
Alignment:
Q  171 gcaacgacgataccttggagaaggtggaaaaggagtgggttcaatt 216  Q
    |||| ||||| || ||||||||||||||||||||||||||||||||    
T  22659272 gcaaagacgagacattggagaaggtggaaaaggagtgggttcaatt 22659227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 26814474 - 26814442
Alignment:
Q  184 cttggagaaggtggaaaaggagtgggttcaatt 216  Q
    ||||||| |||||||||||||||||||||||||    
T  26814474 cttggagcaggtggaaaaggagtgggttcaatt 26814442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 32127973 - 32128005
Alignment:
Q  184 cttggagaaggtggaaaaggagtgggttcaatt 216  Q
    ||||||| |||||||||||||||||||||||||    
T  32127973 cttggagcaggtggaaaaggagtgggttcaatt 32128005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 8221700 - 8221555
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||||| || ||||||||||||||| |||||||| | |||||||||||||||||||||||||||||| ||||||   |||||||| ||||||||||||    
T  8221700 ctttaaagaaaaaatgacacgctctccgtgatcaacaacgttatggtagtcaagtaggaggaaatgttggctcaggaaatagtggatttaagagatctca 8221601  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||    
T  8221600 cgaggactctgtaggatctagtgctcgtccaatgggtagggaggca 8221555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 145
Target Start/End: Original strand, 24917156 - 24917301
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||||||||||||| | |||||||| |||||||||| |||||||||||||| | |||||||||||||  |||||   |||||||||||||| ||||||    
T  24917156 ctttaaaggaagaatgtcgcgctctccgtgatcaaccacgttatggtagtcaaatgggaggaaatgttgggtcaggaagtagtggatctaagatatctca 24917255  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||    
T  24917256 cgaggactctgtaggatctagtgctcgtccaatgggtagggaggca 24917301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 17958845 - 17958982
Alignment:
Q  11 gaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctcacgaggact 107  Q
    |||||||| |||||||||| |||||||||| |||||||||||||  | |||||||||||||  |||||   |||||||||||||||||||||||||||||    
T  17958845 gaagaatggcacgctctccgtgatcaaccacgttatggtagtcagatgggaggaaatgttgggtcagggagtagtggatctaagagatctcacgaggact 17958944  T
Q  108 ctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  17958945 ctgtaggatctagtgctcgtccaatgggtagggaggca 17958982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 634256 - 634119
Alignment:
Q  11 gaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctcacgaggact 107  Q
    |||||||| |||||||||| |||||||||| |||||||||||||  | ||||||||||| |  |||||   |||||||||||||||||||||||||||||    
T  634256 gaagaatggcacgctctccgtgatcaaccacgttatggtagtcagatgggaggaaatgtagggtcagggagtagtggatctaagagatctcacgaggact 634157  T
Q  108 ctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  634156 ctgtaggatctagtgctcgtccaatgggtagggaggca 634119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 6377977 - 6378114
Alignment:
Q  11 gaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctcacgaggact 107  Q
    |||||||| |||||||||| |||||||||| |||||||||||||  | ||||||||||| |  |||||   |||||||||||||||||||||||||||||    
T  6377977 gaagaatggcacgctctccgtgatcaaccacgttatggtagtcagatgggaggaaatgtagggtcagggagtagtggatctaagagatctcacgaggact 6378076  T
Q  108 ctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  6378077 ctgtaggatctagtgctcgtccaatgggtagggaggca 6378114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 18641783 - 18641638
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcag---gtagtggatctaagagatctca 99  Q
    |||||||||||||||| | |  ||||| |||||||||| |||||||||||||| | ||||||||| |||  ||||   ||||||||||||||||||||||    
T  18641783 ctttaaaggaagaatggcgcattctccgtgatcaaccacgttatggtagtcaaatgggaggaaattttgggtcagtaagtagtggatctaagagatctca 18641684  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    ||||||||||||||||||||||||| ||||||||| |||| |||||    
T  18641683 cgaggactctgtaggatctagtgcttgtccaatgggtagggaggca 18641638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 34841005 - 34840873
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcaggtagtggat---ctaagagatctca 99  Q
    |||||| ||||||||| | ||||||||  ||||||||| | |||||||||||||| |||||||||||||||||||| ||| |||   ||||||||||| |    
T  34841005 ctttaatggaagaatggcgcgctctccgagatcaaccacggtatggtagtcaagtgggaggaaatgttgactcaggaagtagatgatctaagagatctta 34840906  T
Q  100 cgaggactctgtaggatctagtgctcgtccaat 132  Q
    |||||||||||||||||||||||||||||||||    
T  34840905 cgaggactctgtaggatctagtgctcgtccaat 34840873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 24114644 - 24114549
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcaggtagtggatctaagagatctcacga 102  Q
    |||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||    |||||||||||||||||||||||    
T  24114644 ctttaatggaagaatgacacgctctccgtgatcaaccacgttatggtagtcaagtaggaggaaatgttggctc----agtggatctaagagatctcacga 24114549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 148
Target Start/End: Complemental strand, 24114528 - 24114485
Alignment:
Q  105 actctgtaggatctagtgctcgtccaatggataggaaggcaact 148  Q
    |||||||||||||||||||||||||||||| |||| ||||||||    
T  24114528 actctgtaggatctagtgctcgtccaatgggtagggaggcaact 24114485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 8221524 - 8221490
Alignment:
Q  182 accttggagaaggtggaaaaggagtgggttcaatt 216  Q
    |||||||||||||||||||||||||||||||||||    
T  8221524 accttggagaaggtggaaaaggagtgggttcaatt 8221490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 24917330 - 24917362
Alignment:
Q  184 cttggagaaggtggaaaaggagtgggttcaatt 216  Q
    |||||| ||||||||||||||||||||||||||    
T  24917330 cttggaaaaggtggaaaaggagtgggttcaatt 24917362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 33751158 - 33751013
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcag---gtagtggatctaagagatctca 99  Q
    ||||||||||||||||||||||||||| |||||||||| |||||| ||||||| | |||||||||||||  ||||   ||||||||||||||||||||||    
T  33751158 ctttaaaggaagaatgacacgctctccgtgatcaaccacgttatgatagtcaaatgggaggaaatgttgggtcagaaagtagtggatctaagagatctca 33751059  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||    
T  33751058 cgaggactctgtaggatctagtgctcgtccaatgggtagggaggca 33751013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 33188611 - 33188750
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||||||||||||| | |||||||| |||||||||| |||||||||||||| | |||||||||||||| |||||   |||||||||||||||||||||    
T  33188611 ctttaaaggaagaatggcgcgctctccgtgatcaaccacgttatggtagtcaaatgggaggaaatgttgagtcaggaagtagtggatctaagagatctca 33188710  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggatagg 139  Q
    |||||||||||||||||||||| |||||||||||| ||||    
T  33188711 cgaggactctgtaggatctagtactcgtccaatgggtagg 33188750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 6045875 - 6046014
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||| ||||||||| | ||||||||  ||||||||| | |||||||||||||| ||||||||||||||||||||   ||||||||||||||||||| |    
T  6045875 ctttaatggaagaatggcgcgctctccgagatcaaccacggtatggtagtcaagtgggaggaaatgttgactcaggaagtagtggatctaagagatctta 6045974  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggatagg 139  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  6045975 cgaggactctgtaggatctagtgctcgtccaatgggtagg 6046014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 30416003 - 30416142
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||| ||||||||| | ||||||||  ||||||||| | |||||||||||||| ||||||||||||||||||||   ||||||||||||||||||| |    
T  30416003 ctttaatggaagaatggcgcgctctccgagatcaaccacggtatggtagtcaagtgggaggaaatgttgactcaggaagtagtggatctaagagatctta 30416102  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggatagg 139  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  30416103 cgaggactctgtaggatctagtgctcgtccaatgggtagg 30416142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 145
Target Start/End: Original strand, 26157642 - 26157788
Alignment:
Q  3 ctttaaaggaa-gaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctc 98  Q
    ||||||||||| ||||| | |||||||| |||||||||| |||||||||||||| | |||||||||||||  |||||   ||||||||||||||||||||    
T  26157642 ctttaaaggaaagaatggcgcgctctccgtgatcaaccacgttatggtagtcaaatgggaggaaatgttgggtcaggaagtagtggatctaagagatctc 26157741  T
Q  99 acgaggactctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||    
T  26157742 acgaggactctgtaggatctagtgctcgtccaatgggtagggaggca 26157788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 50019591 - 50019453
Alignment:
Q  4 tttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctcac 100  Q
    |||||||||||||||||||||||||| ||||||||||  |||| |||||||| | |||||||||||||  |||||   ||||||||||||||||||||||    
T  50019591 tttaaaggaagaatgacacgctctccgtgatcaaccacattatagtagtcaaatgggaggaaatgttgggtcaggaagtagtggatctaagagatctcac 50019492  T
Q  101 gaggactctgtaggatctagtgctcgtccaatggatagg 139  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  50019491 gaggactccgtaggatctagtgctcgtccaatgggtagg 50019453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 17469002 - 17468865
Alignment:
Q  11 gaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctcacgaggact 107  Q
    |||||||| |||||||||| |||||||||| |||||||||||||  | |||||||||||||  |||||   |||||||||||||||||||||||||||||    
T  17469002 gaagaatggcacgctctccgtgatcaaccacgttatggtagtcagatgggaggaaatgttgggtcagggagtagtggatctaagagatctcacgaggact 17468903  T
Q  108 ctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  17468902 ctgtaggatctagtgctcgtccaatgggtagggaggca 17468865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 25788255 - 25788392
Alignment:
Q  11 gaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctcacgaggact 107  Q
    |||||||| |||||||||| |||||||||| |||||||||||||  | |||||||||||||  |||||   |||||||||||||||||||||||||||||    
T  25788255 gaagaatggcacgctctccgtgatcaaccacgttatggtagtcagatgggaggaaatgttgggtcagggagtagtggatctaagagatctcacgaggact 25788354  T
Q  108 ctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  25788355 ctgtaggatctagtgctcgtccaatgggtagggaggca 25788392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 145
Target Start/End: Original strand, 30689368 - 30689513
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||||||||||||| |||||||||| ||||||||||  ||||||||||||| | |||||||||||||  |||||   |||||||||||||||||||||    
T  30689368 ctttaaaggaagaatggcacgctctccgtgatcaaccacattatggtagtcaaatgggaggaaatgttgggtcaggaagtagtggatctaagagatctca 30689467  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    ||| || |||||||||||||||||||||||||||| |||| |||||    
T  30689468 cgatgattctgtaggatctagtgctcgtccaatgggtagggaggca 30689513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 42598910 - 42599047
Alignment:
Q  11 gaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctcacgaggact 107  Q
    |||||||| |||||||||| |||||||||| |||||||||||||  | |||||||||||||  |||||   |||||||||||||||||||||||||||||    
T  42598910 gaagaatggcacgctctccgtgatcaaccacgttatggtagtcagatgggaggaaatgttgggtcagggagtagtggatctaagagatctcacgaggact 42599009  T
Q  108 ctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  42599010 ctgtaggatctagtgctcgtccaatgggtagggaggca 42599047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 10425199 - 10425338
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||| ||||||||| |  |||||||  ||||||||| | |||||||||||||| ||||||||||||||||||||   ||||||||||||||||||| |    
T  10425199 ctttaatggaagaatggcgtgctctccgagatcaaccacggtatggtagtcaagtgggaggaaatgttgactcaggaagtagtggatctaagagatctta 10425298  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggatagg 139  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  10425299 cgaggactctgtaggatctagtgctcgtccaatgggtagg 10425338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 25830212 - 25830349
Alignment:
Q  11 gaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctcacgaggact 107  Q
    |||||||| |||||||||| |||||||||| |||||||||||||  | ||||||||||| |  |||||   |||||||||||||||||||||||||||||    
T  25830212 gaagaatggcacgctctccgtgatcaaccacgttatggtagtcagatgggaggaaatgtagggtcagggagtagtggatctaagagatctcacgaggact 25830311  T
Q  108 ctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  25830312 ctgtaggatctagtgctcgtccaatgggtagggaggca 25830349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 33935771 - 33935626
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    ||||||| ||||||||||||||||||| |||||||||| ||||||||||| |  | |||||||||||||  |||||   |||| ||||||||||||||||    
T  33935771 ctttaaatgaagaatgacacgctctccgtgatcaaccacgttatggtagttagatgggaggaaatgttgggtcaggaagtagtagatctaagagatctca 33935672  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    | ||||||||||||||||||||||||||||||||| |||| |||||    
T  33935671 caaggactctgtaggatctagtgctcgtccaatgggtagggaggca 33935626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 47146859 - 47146722
Alignment:
Q  11 gaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctcacgaggact 107  Q
    |||||||| |||||||||| |||||||||| |||||||||||||  | |||||||||||||  |||||   |||||||||||||||||||||||||||||    
T  47146859 gaagaatggcacgctctccgtgatcaaccacgttatggtagtcagatgggaggaaatgttgggtcagggagtagtggatctaagagatctcacgaggact 47146760  T
Q  108 ctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    | ||||||||||||||||||||||||| |||| |||||    
T  47146759 ccgtaggatctagtgctcgtccaatgggtagggaggca 47146722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 51429460 - 51429323
Alignment:
Q  11 gaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctcacgaggact 107  Q
    |||||||| |||||||||| |||||||||| |||||||||||||  | |||||||||||||  ||| |   |||||||||||||||||||||||||||||    
T  51429460 gaagaatggcacgctctccgtgatcaaccacgttatggtagtcagatgggaggaaatgttgggtcaagaagtagtggatctaagagatctcacgaggact 51429361  T
Q  108 ctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  51429360 ctgtaggatctagtgctcgtccaatgggtagggaggca 51429323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 139
Target Start/End: Complemental strand, 42563506 - 42563367
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||| | ||||||||| |||||| |  ||||||||| | |||||||||||| | ||||||||||||||||||||   ||||||||||||||||||| |    
T  42563506 ctttaatgaaagaatgacgcgctcttcgagatcaaccacggtatggtagtcaaatgggaggaaatgttgactcaggaagtagtggatctaagagatctta 42563407  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggatagg 139  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  42563406 cgaggactctgtaggatctagtgctcgtccaatgggtagg 42563367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 43474987 - 43474886
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcag---gtagtggatctaagagatctca 99  Q
    |||||||||||||||| | ||||||||  ||||||||||| |||||||||||| | |||||||||||||  | ||   |||||| |||||||||||||||    
T  43474987 ctttaaaggaagaatggcgcgctctccgagatcaaccatg-tatggtagtcaaatgggaggaaatgttgggttaggaagtagtgaatctaagagatctca 43474889  T
Q  100 cga 102  Q
    |||    
T  43474888 cga 43474886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 21227710 - 21227611
Alignment:
Q  4 tttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactc---aggtagtggatctaagagatctcac 100  Q
    ||||| || |||||| ||| |||||  |||||||||| |||||||||||||| |||||||||||  || |||   | |||||||||||||||||||||||    
T  21227710 tttaatggtagaatggcacactctcagtgatcaaccaagttatggtagtcaaataggaggaaatactggctcgagaagtagtggatctaagagatctcac 21227611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 21230063 - 21230155
Alignment:
Q  15 aatgacacgctctccatgatcaaccatgt-tatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctcacgag 103  Q
    |||| |||||||||| | ||||||||  | ||||||||||||| ||||||||||  || ||||||   |||||||||||| ||||||||||||    
T  21230063 aatggcacgctctccgtcatcaaccacatatatggtagtcaagcaggaggaaatactggctcaggaagtagtggatctaaaagatctcacgag 21230155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 21230179 - 21230215
Alignment:
Q  109 tgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    |||||||||||||||||||||||||| |||| |||||    
T  21230179 tgtaggatctagtgctcgtccaatgggtagggaggca 21230215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 33935584 - 33935552
Alignment:
Q  184 cttggagaaggtggaaaaggagtgggttcaatt 216  Q
    ||||||| |||||||||||||||||||||||||    
T  33935584 cttggaggaggtggaaaaggagtgggttcaatt 33935552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 51429281 - 51429249
Alignment:
Q  184 cttggagaaggtggaaaaggagtgggttcaatt 216  Q
    ||||||| |||||||||||||||||||||||||    
T  51429281 cttggaggaggtggaaaaggagtgggttcaatt 51429249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 27359659 - 27359514
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||| | |||||||||||||||||| |||||||||| |||||||| ||||||||||||||||| ||| |||| |   |||||||||||||||||||||    
T  27359659 ctttaatgaaagaatgacacgctctccgtgatcaaccacgttatggtggtcaagtaggaggaaatattggctcaagaagtagtggatctaagagatctca 27359560  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    |||| ||||||||||||||||||||||||||||| ||||| |||||    
T  27359559 cgagaactctgtaggatctagtgctcgtccaatgaatagggaggca 27359514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 27369016 - 27368871
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||| | |||||||||||||||||| |||||||||| |||||||| ||||||||||||||||| ||| |||| |   |||||||||||||||||||||    
T  27369016 ctttaatgaaagaatgacacgctctccgtgatcaaccacgttatggtggtcaagtaggaggaaatattggctcaagaagtagtggatctaagagatctca 27368917  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    |||| ||||||||||||||||||||||||||||| ||||| |||||    
T  27368916 cgagaactctgtaggatctagtgctcgtccaatgaatagggaggca 27368871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 1955826 - 1955965
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||| ||||||||| | ||||||||  ||||||||| | |||||||||||||| ||||||||||||||||||||   ||||||||||||||||||| |    
T  1955826 ctttaatggaagaatggcgcgctctccgagatcaaccacggtatggtagtcaagtgggaggaaatgttgactcaggaagtagtggatctaagagatctta 1955925  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggatagg 139  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  1955926 cgaggactctgtaggatctagtgctcgtccaatgggtagg 1955965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 35100983 - 35100846
Alignment:
Q  11 gaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctcacgaggact 107  Q
    ||||||||||||||||||| |||||||||| |||||||||||||  | |||||||||||||  |||||   |||||||||||||||||||||||||||||    
T  35100983 gaagaatgacacgctctccgtgatcaaccacgttatggtagtcagatgggaggaaatgttgggtcagggagtagtggatctaagagatctcacgaggact 35100884  T
Q  108 ctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
     |||||||||||||||||||||||||| |||| |||||    
T  35100883 atgtaggatctagtgctcgtccaatgggtagggaggca 35100846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 30530169 - 30530308
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||||||||||||| | |||||||| ||||||||||  |||||||| |||| | |||||||||||||  |||||   |||||||||||||||||||||    
T  30530169 ctttaaaggaagaatggcgcgctctccgtgatcaaccacattatggtactcaaatgggaggaaatgttgggtcaggaagtagtggatctaagagatctca 30530268  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggatagg 139  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  30530269 cgaggactctgtaggatctagtgctcgtccaatgggtagg 30530308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 17744166 - 17744021
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcaggtagt---ggatctaagagatctca 99  Q
    |||||||||||||||| || ||||||| |||||||||| ||||||| |||||| | | |||||||||||  ||||| |||   |||||||||||||||||    
T  17744166 ctttaaaggaagaatgtcatgctctccgtgatcaaccacgttatggaagtcaaatggaaggaaatgttgggtcaggaagtaatggatctaagagatctca 17744067  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||    
T  17744066 cgaggactctgtaggatctagtgctcgtccaatgggtagggaggca 17744021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 15056143 - 15055998
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||||||||||||| | ||||||||  |||||||||   ||| |||||||| | ||||||||||| ||||||||   ||||| ||||||||||||| |    
T  15056143 ctttaaaggaagaatggcgcgctctccgagatcaaccacagtatagtagtcaaatgggaggaaatgtggactcaggaagtagtgtatctaagagatctta 15056044  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||    
T  15056043 cgaggactctgtaggatctagtgctcgtccaatgggtagggaggca 15055998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 13816633 - 13816518
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    ||||||| ||| |||| |||||||||  |||||||||| |||||||||||||  | |||||||||||||  |||||   |||||||||||||||||||||    
T  13816633 ctttaaatgaaaaatggcacgctctctgtgatcaaccacgttatggtagtcagatgggaggaaatgttgggtcaggaagtagtggatctaagagatctca 13816534  T
Q  100 cgaggactctgtagga 115  Q
    ||||||||||||||||    
T  13816533 cgaggactctgtagga 13816518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 15055973 - 15055928
Alignment:
Q  171 gcaacgacgataccttggagaaggtggaaaaggagtgggttcaatt 216  Q
    |||| ||||| || ||||||||||||||||| ||||||||||||||    
T  15055973 gcaaggacgagacattggagaaggtggaaaatgagtgggttcaatt 15055928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 7586076 - 7586215
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    |||||| ||||||||| | ||||||||  ||||||||| | |||||||||||||| ||||||||||||||||||||   ||||||||||||||||||| |    
T  7586076 ctttaatggaagaatggcgcgctctccgagatcaaccacggtatggtagtcaagtgggaggaaatgttgactcaggaagtagtggatctaagagatctta 7586175  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggatagg 139  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  7586176 cgaggactctgtaggatctagtgctcgtccaatgggtagg 7586215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 31185781 - 31185920
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    ||||||| ||||||||||||||||||| |||||||||| |||||||||||||| | |||||||||||||  |||||   |||||||||||||||||||||    
T  31185781 ctttaaacgaagaatgacacgctctccgtgatcaaccacgttatggtagtcaaatgggaggaaatgttgggtcaggaagtagtggatctaagagatctca 31185880  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggatagg 139  Q
     ||||||| |||||||||||||||||||||||||| ||||    
T  31185881 ggaggactttgtaggatctagtgctcgtccaatgggtagg 31185920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 9073467 - 9073604
Alignment:
Q  11 gaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctcacgaggact 107  Q
    |||||||| |||||||||| |||||||||| |||||||||||||  | |||||||||||||  |||||   |||||||||||||||||||||||||||||    
T  9073467 gaagaatggcacgctctccgtgatcaaccacgttatggtagtcagatgggaggaaatgttgggtcagggagtagtggatctaagagatctcacgaggact 9073566  T
Q  108 ctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  9073567 ctgtaggatctagtgctcgtccaatgggtagggaggca 9073604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 30820164 - 30820301
Alignment:
Q  11 gaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctcacgaggact 107  Q
    |||||||| |||||||||| |||||||||| |||||||||||||  | |||||||||||||  |||||   |||||||||||||||||||||||||||||    
T  30820164 gaagaatggcacgctctccgtgatcaaccacgttatggtagtcagatgggaggaaatgttgggtcagggagtagtggatctaagagatctcacgaggact 30820263  T
Q  108 ctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  30820264 ctgtaggatctagtgctcgtccaatgggtagggaggca 30820301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 145
Target Start/End: Original strand, 31205496 - 31205641
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    ||||||| |||||||| |||||||||| |||||||||| |||||||||||||| | ||| |||||||||  |||||   |||||||||||||||||||||    
T  31205496 ctttaaacgaagaatggcacgctctccgtgatcaaccacgttatggtagtcaaatgggatgaaatgttgggtcaggaagtagtggatctaagagatctca 31205595  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    |||||||| |||||||||||||||||||||||||| |||| |||||    
T  31205596 cgaggactttgtaggatctagtgctcgtccaatgggtagggaggca 31205641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 8854585 - 8854448
Alignment:
Q  11 gaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctcacgaggact 107  Q
    |||||||| |||||||||| |||||||||| |||||||||||||  | |||||||||||||  | |||   |||||||||||||||||||||||||||||    
T  8854585 gaagaatggcacgctctccgtgatcaaccacgttatggtagtcagatgggaggaaatgttgggttagggagtagtggatctaagagatctcacgaggact 8854486  T
Q  108 ctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  8854485 ctgtaggatctagtgctcgtccaatgggtagggaggca 8854448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 12857465 - 12857328
Alignment:
Q  11 gaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctcacgaggact 107  Q
    |||||||| |||||||||| |||||||||| |||||||||||||  | ||||||||||| |  |||||   |||||||||||||||||||||||||||||    
T  12857465 gaagaatggcacgctctccgtgatcaaccacgttatggtagtcagatgggaggaaatgtagggtcagggagtagtggatctaagagatctcacgaggact 12857366  T
Q  108 ctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  12857365 ctgtaggatctagtgctcgtccaatgggtagggaggca 12857328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 4278663 - 4278561
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcag---gtagtggatctaagagatctca 99  Q
    |||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| | ||| |||||   ||||||||||||||||||||||    
T  4278663 ctttaatggaagaatgacacgctctccgtgatcaaccatgttatgctagtcaagtaggaggaagtattggctcaggaagtagtggatctaagagatctca 4278564  T
Q  100 cga 102  Q
    |||    
T  4278563 cga 4278561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 4278474 - 4278429
Alignment:
Q  171 gcaacgacgataccttggagaaggtggaaaaggagtgggttcaatt 216  Q
    |||| |||| |||||||||| |||||||||||||||||||| ||||    
T  4278474 gcaaggacgctaccttggaggaggtggaaaaggagtgggttgaatt 4278429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 105372 - 105226
Alignment:
Q  3 ctttaaaggaa-gaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctc 98  Q
    ||||||||||| ||||| | |||||||| |||||||||| |||||||||||||| | |||||||||||||  |||||   ||||||||||||||||||||    
T  105372 ctttaaaggaaagaatggcgcgctctccgtgatcaaccacgttatggtagtcaaatgggaggaaatgttgggtcaggaagtagtggatctaagagatctc 105273  T
Q  99 acgaggactctgtaggatctagtgctcgtccaatggataggaaggca 145  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||    
T  105272 acgaggactctgtaggatctagtgctcgtccaatgggtagggaggca 105226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 105184 - 105152
Alignment:
Q  184 cttggagaaggtggaaaaggagtgggttcaatt 216  Q
    ||||||| |||||||||||||||||||||||||    
T  105184 cttggaggaggtggaaaaggagtgggttcaatt 105152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1240 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold1240
Description:

Target: scaffold1240; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 255 - 380
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcagg---tagtggatctaagagatctca 99  Q
    ||||||| |||||||| |||||||||| |||||||||| |||||||||||||| | |||||||||||||  ||| |   |||||||||||||||||||||    
T  255 ctttaaatgaagaatggcacgctctccgtgatcaaccacgttatggtagtcaaatgggaggaaatgttgggtcaagaagtagtggatctaagagatctca 354  T
Q  100 cgaggactctgtaggatctagtgctc 125  Q
    ||||||||||||||||||||||||||    
T  355 cgaggactctgtaggatctagtgctc 380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0658 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 134
Target Start/End: Original strand, 6664 - 6798
Alignment:
Q  3 ctttaaaggaagaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcag---gtagtggatctaagagatctca 99  Q
    |||||| | |||| || ||||| |||| |||||||||| ||||||||||||||||||||||| || ||| ||||    ||||||||||||||||||||||    
T  6664 ctttaatgaaagagtggcacgccctccgtgatcaaccacgttatggtagtcaagtaggaggagatattggctcaaaaagtagtggatctaagagatctca 6763  T
Q  100 cgaggactctgtaggatctagtgctcgtccaatgg 134  Q
    ||||||||||||||||||||||||||||| |||||    
T  6764 cgaggactctgtaggatctagtgctcgtcaaatgg 6798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 166874 - 166966
Alignment:
Q  14 gaatgacacgctctccatgatcaaccatgttatggtagtcaagtaggaggaaatgttgactcag---gtagtggatctaagagatctcacgag 103  Q
    ||||| ||||||||||||| | |||||  |||||||||||||||||||||||||  || |||||   ||||||||||||||||||||||||||    
T  166874 gaatggcacgctctccatgcttaaccacattatggtagtcaagtaggaggaaatactggctcaggaagtagtggatctaagagatctcacgag 166966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University