View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19675_high_9 (Length: 683)

Name: NF19675_high_9
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19675_high_9
NF19675_high_9
[»] scaffold0603 (1 HSPs)
scaffold0603 (108-666)||(1816-2374)
[»] chr3 (12 HSPs)
chr3 (354-666)||(2922096-2922406)
chr3 (388-666)||(5968383-5968661)
chr3 (405-636)||(11488628-11488859)
chr3 (387-666)||(11494852-11495131)
chr3 (351-630)||(10187258-10187534)
chr3 (351-630)||(10080288-10080558)
chr3 (568-630)||(3872725-3872788)
chr3 (444-630)||(4132866-4133055)
chr3 (405-511)||(3872789-3872895)
chr3 (586-628)||(4057663-4057705)
chr3 (587-636)||(909088-909137)
chr3 (453-497)||(4104609-4104653)
[»] chr1 (1 HSPs)
chr1 (348-638)||(17314353-17314641)
[»] chr5 (1 HSPs)
chr5 (102-666)||(16449353-16449910)
[»] chr4 (2 HSPs)
chr4 (384-666)||(5991091-5991373)
chr4 (29-59)||(5992484-5992514)
[»] chr8 (1 HSPs)
chr8 (348-636)||(18390649-18390934)


Alignment Details
Target: scaffold0603 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 108 - 666
Target Start/End: Original strand, 1816 - 2374
Alignment:
Q  108 aaagagtacctaacatatttgaagtcagtttctgtttctctttttcatccgttcgtcatcagtaaaaaattaatggacctggttgcaggttgtgcatgta 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| |||||||||| |||||| |||||||||||| |    
T  1816 aaagagtacctaacatatttgaagtcagtttctgtttctctttttcatccattcctcattagtaaaacattaatggacttggttgaaggttgtgcatgca 1915  T
Q  208 aatttgacttctcacaacagcaagatttggaagaagcaggggtgacagaatacaattctataattagaaaaacaagtcagtgttagagttataatatggt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  || ||||||||||||||| ||||||||    
T  1916 aatttgacttctcacaacagcaagatttggaagaagcaggggtgacagaatacaattctatcattagaaaagtaaatcagtgttagagttacaatatggt 2015  T
Q  308 atctcgaagttgataatgaaattaagaatgttatttaagcatgacataataagaaagaaacaaaaaatagaagcctttcagagactcacccgaataggaa 407  Q
    |||| || ||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2016 atcttgatgttgataataaaattaagaatgttaattaagcatgacatagtaagaaagaaacaaaaaatagaagcctttcagagactcacccgaataggaa 2115  T
Q  408 actcatgtaatcaattcgtcatctataattatggagggaatgtgggcaatcttacgtcactctttcccttgcttcctctgcaaccttgcttccagtaatg 507  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | || ||||||||||||||||    
T  2116 actcatgttatcaattcatcatctataattatggagggaatgtgggcaatcttacgccactctttcccttgcttcctccggaaacttgcttccagtaatg 2215  T
Q  508 gacagtgagtcatatttagcactaaaagagaggaaggaaatcctttctttggcaacaacctgagtttcggagcattaacaatctcaaggttttggagaga 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2216 gacagtgagtcatatttagcactaaaagagaggaaggaaatcctttctttggcaacaacctgagtttcagagcattaacaatctcaaggttttggagaga 2315  T
Q  608 agtgagatgttgaagccacttccgatcaatgattttaccactaaaaccacagatgcata 666  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  2316 agtgagatgttgaagccacttccaatcaatgcttttaccactaaaaccacagatgcata 2374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 2e-69; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 354 - 666
Target Start/End: Complemental strand, 2922406 - 2922096
Alignment:
Q  354 taataagaaagaaacaaaaaatagaagcctttcagagactcacccgaataggaaactcatgtaatcaattcgtcatctataattatggagggaatgtggg 453  Q
    |||||||||||||||||||||  ||||  |||||| ||||||||| |||||||||||||||| |||| |||| |||| |||| ||||||| ||| ||| |    
T  2922406 taataagaaagaaacaaaaaa--gaagtatttcagtgactcacccaaataggaaactcatgtgatcagttcgccatcgataactatggagagaacgtgag 2922309  T
Q  454 caatcttacgtcactctttcccttgcttcctctgcaaccttgcttccagtaatggacagtgagtcatatttagcactaaaagagaggaaggaaatccttt 553  Q
    |||| ||||| |||| |||||||||||||||| |||  |||||||| |||||||||||  |   |||| |||||||| ||||||| | ||| ||||||||    
T  2922308 caatgttacgccactttttcccttgcttcctccgcacacttgcttctagtaatggacaacggtccataattagcactgaaagagatgtaggcaatccttt 2922209  T
Q  554 ctttggcaacaacctgagtttcggagcattaacaatctcaaggttttggagagaagtgagatgttgaagccacttccgatcaatgattttaccactaaaa 653  Q
     ||||||||| |  ||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||  || ||||| |||||    
T  2922208 ttttggcaacgaattgagtttgggagcattaacaatctcaagcttttggagagaggtgagatgttgaagccacttcccatcaattcttgtaccattaaaa 2922109  T
Q  654 ccacagatgcata 666  Q
    |||| ||||||||    
T  2922108 ccacggatgcata 2922096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 388 - 666
Target Start/End: Complemental strand, 5968661 - 5968383
Alignment:
Q  388 gagactcacccgaataggaaactcatgtaatcaattcgtcatctataattatggagggaatgtgggcaatcttacgtcactctttcccttgcttcctctg 487  Q
    |||||||||||||| | |||| |||||| || | ||| || |  |||||||| || |||||||| ||||||||||| ||||||||||||||||||||| |    
T  5968661 gagactcacccgaacatgaaaatcatgtgattatttcatcgttgataattatagacggaatgtgagcaatcttacgccactctttcccttgcttcctccg 5968562  T
Q  488 caaccttgcttccagtaatggacagtgagtcatatttagcactaaaagagaggaaggaaatcctttctttggcaacaacctgagtttcggagcattaaca 587  Q
    ||| ||||| |||||||| ||||||||||||||| |||| ||| ||||||||||||| |||||||| ||||||||  || | ||||| ||||| ||||||    
T  5968561 caaacttgcatccagtaacggacagtgagtcatacttagtactgaaagagaggaaggcaatcctttttttggcaatgactttagtttgggagcgttaaca 5968462  T
Q  588 atctcaaggttttggagagaagtgagatgttgaagccacttccgatcaatgattttaccactaaaaccacagatgcata 666  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||  || ||||| ||| |||||| |||||||    
T  5968461 atctcaaggttttggagagaagtcagatgttgaagccacttcccatcaattcttgtaccattaagaccacaaatgcata 5968383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 405 - 636
Target Start/End: Original strand, 11488628 - 11488859
Alignment:
Q  405 gaaactcatgtaatcaattcgtcatctataattatggagggaatgtgggcaatcttacgtcactctttcccttgcttcctctgcaaccttgcttccagta 504  Q
    ||||||||||| |||||||| ||||| |||||||||   || ||||| ||||||||||  ||||||||||||||||||||| ||||  ||||||| || |    
T  11488628 gaaactcatgtgatcaattcatcatcaataattatgacaggtatgtgagcaatcttactccactctttcccttgcttcctccgcaaaattgcttcgagca 11488727  T
Q  505 atggacagtgagtcatatttagcactaaaagagaggaaggaaatcctttctttggcaacaacctgagtttcggagcattaacaatctcaaggttttggag 604  Q
    |||| ||| ||||||||||||| ||| ||||||||||||| |||||||| ||||||||  || ||||||| |||||||||| ||||||||||||||||||    
T  11488728 atgggcagcgagtcatatttagtactgaaagagaggaaggcaatcctttttttggcaatgacttgagtttgggagcattaataatctcaaggttttggag 11488827  T
Q  605 agaagtgagatgttgaagccacttccgatcaa 636  Q
    |||||||||||||||||||||||||| |||||    
T  11488828 agaagtgagatgttgaagccacttcccatcaa 11488859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 387 - 666
Target Start/End: Original strand, 11494852 - 11495131
Alignment:
Q  387 agagactcacccgaataggaaactcatgtaatcaattcgtcatctataattatggagggaatgtgggcaatcttacgtcactctttcccttgcttcctct 486  Q
    ||||||||||||| | | || |||||||| |||||||||||||| ||||||||||||||||| || ||||||||||| || ||||||||| ||||||| |    
T  11494852 agagactcacccggacaagatactcatgtgatcaattcgtcatcgataattatggagggaatatgagcaatcttacgccattctttccctcgcttccttt 11494951  T
Q  487 gcaaccttgcttccagtaatggacagtgagtcatatttagcactaaaagagaggaaggaaatcctttctttggcaacaacctgagtttcggagcattaac 586  Q
    ||||  |||||| |||||||||||||  |||||||||||  ||| ||||  ||||||| ||||| || || |||||| || | ||||| ||||| || ||    
T  11494952 gcaattttgctttcagtaatggacagcaagtcatatttataactgaaagccaggaaggcaatccctttttcggcaacgacttaagtttgggagcgttcac 11495051  T
Q  587 aatctcaaggttttggagagaagtgagatgttgaagccacttccgatcaatgattttaccactaaaaccacagatgcata 666  Q
    ||||||||||||||||||||| |||||||||| || |||||||  ||||||| ||||| || ||| ||||||||||||||    
T  11495052 aatctcaaggttttggagagaggtgagatgttcaaaccacttctcatcaatgcttttatcattaagaccacagatgcata 11495131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 351 - 630
Target Start/End: Complemental strand, 10187534 - 10187258
Alignment:
Q  351 acataataagaaagaaacaaaaaatagaagcctttcagagactcacccgaataggaaactcatgtaatcaattcgtcatctataattatggagggaatgt 450  Q
    |||||||||||||||||||||||   ||||  |||||||||||||||   ||| ||||||||||| || |||| |||||| ||||||||||  || ||||    
T  10187534 acataataagaaagaaacaaaaa---gaagtatttcagagactcaccaagatatgaaactcatgtgattaatttgtcatcaataattatggcaggtatgt 10187438  T
Q  451 gggcaatcttacgtcactctttcccttgcttcctctgcaaccttgcttccagtaatggacagtgagtcatatttagcactaaaagagaggaaggaaatcc 550  Q
    |   ||||||| | ||||||||||||||||| |||||||||| |||||| |||||||||||| |||| | | |||| ||  ||| ||||| ||| |||||    
T  10187437 gaagaatcttatgccactctttcccttgcttgctctgcaaccctgcttcaagtaatggacagcgagttaaacttagtacagaaatagaggtaggcaatcc 10187338  T
Q  551 tttctttggcaacaacctgagtttcggagcattaacaatctcaaggttttggagagaagtgagatgttgaagccacttcc 630  Q
    ||  ||||||||| ||  |||||| ||||| |||||||||||||||||| |||||||| ||||||||  || ||||||||    
T  10187337 ttcgtttggcaacgactcgagtttgggagcgttaacaatctcaaggtttcggagagaactgagatgtaaaaaccacttcc 10187258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 351 - 630
Target Start/End: Complemental strand, 10080558 - 10080288
Alignment:
Q  351 acataataagaaagaaacaaaaaatagaagcctttcagagactcacccgaataggaaactcatgtaatcaattcgtcatctataattatggagggaatgt 450  Q
    |||||||||||||||||||||||   ||||  |||||||||||||||   ||| ||||||||||| || |||| |||||| ||||||||||  || ||||    
T  10080558 acataataagaaagaaacaaaaa---gaagtatttcagagactcaccaagatatgaaactcatgtgattaatttgtcatcaataattatggcaggtatgt 10080462  T
Q  451 gggcaatcttacgtcactctttcccttgcttcctctgcaaccttgcttccagtaatggacagtgagtcatatttagcactaaaagagaggaaggaaatcc 550  Q
    |   ||||||||| |||||||      |||| |||||||||| |||||| |||||||||||| |||| | | |||| ||  ||| ||||| ||| |||||    
T  10080461 gaagaatcttacgccactctt------gcttgctctgcaaccctgcttcaagtaatggacagcgagttaaacttagtacagaaatagaggtaggcaatcc 10080368  T
Q  551 tttctttggcaacaacctgagtttcggagcattaacaatctcaaggttttggagagaagtgagatgttgaagccacttcc 630  Q
    ||  ||||||||| ||  |||||| ||||| |||||||||||||||||| |||||||| ||||||||  || ||||||||    
T  10080367 ttcatttggcaacgactcgagtttgggagcgttaacaatctcaaggtttcggagagaactgagatgtaaaaaccacttcc 10080288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 568 - 630
Target Start/End: Complemental strand, 3872788 - 3872725
Alignment:
Q  568 tgagtttcggagcattaacaatctcaaggtttt-ggagagaagtgagatgttgaagccacttcc 630  Q
    ||||||| ||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  3872788 tgagtttgggagcgttaacaatctcaaagtttttggagagaagtgagatgttgaagccacttcc 3872725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 444 - 630
Target Start/End: Complemental strand, 4133055 - 4132866
Alignment:
Q  444 ggaatgtgggcaatcttacgtcactctttcccttgcttcctctgcaaccttgcttccagtaatggacagtgagtcatatttagcactaaaagagaggaag 543  Q
    |||||||| ||||||||||| |||||||||||| ||||| ||||| | ||||||| ||  || ||||| |   | ||||| | ||||  ||| |||||||    
T  4133055 ggaatgtgagcaatcttacgccactctttccctcgcttcttctgccaacttgctttcaacaacggacactttttgatattcaacactttaagggaggaag 4132956  T
Q  544 gaaat---cctttctttggcaacaacctgagtttcggagcattaacaatctcaaggttttggagagaagtgagatgttgaagccacttcc 630  Q
    | ||    || || ||||||||| || |||| || ||||||| || ||| ||||  | ||||||||| ||||||||||||||||||||||    
T  4132955 gcaacttccccttttttggcaacgacttgagcttgggagcatcaataatatcaaaatgttggagagaggtgagatgttgaagccacttcc 4132866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 405 - 511
Target Start/End: Complemental strand, 3872895 - 3872789
Alignment:
Q  405 gaaactcatgtaatcaattcgtcatctataattatggagggaatgtgggcaatcttacgtcactctttcccttgcttcctctgcaaccttgcttccagta 504  Q
    |||||| |||| |||| ||||||||| ||||||||||  || | ||| ||||| ||||  ||||  |||||| |||||||| |||| |||||||| ||||    
T  3872895 gaaacttatgtgatcagttcgtcatcaataattatggcaggcacgtgagcaattttacaccacttcttccctcgcttcctccgcaaacttgcttcaagta 3872796  T
Q  505 atggaca 511  Q
    |||||||    
T  3872795 atggaca 3872789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 586 - 628
Target Start/End: Original strand, 4057663 - 4057705
Alignment:
Q  586 caatctcaaggttttggagagaagtgagatgttgaagccactt 628  Q
    |||||| ||| ||||||||||| ||||||||||||||||||||    
T  4057663 caatcttaagtttttggagagaggtgagatgttgaagccactt 4057705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 587 - 636
Target Start/End: Original strand, 909088 - 909137
Alignment:
Q  587 aatctcaaggttttggagagaagtgagatgttgaagccacttccgatcaa 636  Q
    ||||||||||||||||||||| |||||||| |  |||||||||| |||||    
T  909088 aatctcaaggttttggagagaggtgagatggtcgagccacttcccatcaa 909137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 453 - 497
Target Start/End: Original strand, 4104609 - 4104653
Alignment:
Q  453 gcaatcttacgtcactctttcccttgcttcctctgcaaccttgct 497  Q
    ||||||||||| ||||||||||||| ||||||| |||| ||||||    
T  4104609 gcaatcttacgccactctttcccttccttcctcagcaaacttgct 4104653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 8e-66; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 348 - 638
Target Start/End: Complemental strand, 17314641 - 17314353
Alignment:
Q  348 atgacataataagaaagaaacaaaaaatagaagcctttcagagactcacccgaataggaaactcatgtaatcaattcgtcatctataattatggagggaa 447  Q
    ||||||||||||||||||||||||||||||  |  |||||| |||||||| | ||||||||||||||| ||||| |  ||||| ||||||||||||||||    
T  17314641 atgacataataagaaagaaacaaaaaataggtg--tttcagtgactcaccagtataggaaactcatgtgatcaaattatcatcgataattatggagggaa 17314544  T
Q  448 tgtgggcaatcttacgtcactctttcccttgcttcctctgcaaccttgcttccagtaatggacagtgagtcatatttagcactaaaagagaggaaggaaa 547  Q
    |||| ||||||||||| |||||||| ||| |||||||| |||| ||| |||  || | ||| ||| ||||||||||||| || |||||||||||||| ||    
T  17314543 tgtgagcaatcttacgccactcttttcctcgcttcctccgcaaactttctttgagcattgggcagcgagtcatatttagtaccaaaagagaggaaggcaa 17314444  T
Q  548 tcctttctttggcaacaacctgagtttcggagcattaacaatctcaaggttttggagagaagtgagatgttgaagccacttccgatcaatg 638  Q
     ||| | | ||| |||||| | ||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  17314443 acctctttctggtaacaacttcagtttgggggcgttaacaatctcaaggttttggagagaagtgagatgttgaagccacttctcatcaatg 17314353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 8e-63; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 102 - 666
Target Start/End: Complemental strand, 16449910 - 16449353
Alignment:
Q  102 agacagaaagagtacctaacatatttgaagtcagtttctgtttctctttttcatccgttcgtcatcagtaaaaaattaa-tggacctggttgcaggttgt 200  Q
    ||||| |||||||||| ||||||||||  | ||| |  |||||||| |||||||| |||| | || ||||||| ||| | ||||| ||||||||||||||    
T  16449910 agacaaaaagagtaccaaacatatttgcgg-caggtgttgtttctccttttcatctgttcatgattagtaaaacattgactggacttggttgcaggttgt 16449812  T
Q  201 gcatgtaaatttgacttctcacaacagcaagatttggaagaagcaggggtgac--agaatacaattctataattagaaaaacaagtcagtgttagagtta 298  Q
     |||| |||||||||||||||||||||||| ||| || ||||| |||||||||  ||||||||||||||| | | |||||| |     | || |  |||     
T  16449811 acatgaaaatttgacttctcacaacagcaatattgggcagaagtaggggtgacagagaatacaattctatgaattgaaaaaaa----tgagtaattgttg 16449716  T
Q  299 taatatggtatctcgaagttgataatgaaattaagaatgttatttaagcatgacataataagaaagaaacaaaaaatagaagcctttcagagactcaccc 398  Q
    | |||| |||| | || ||   || ||||| ||| ||| ||| || |  || ||||   ||||||| ||||||||  |||||  |||||  |||||||||    
T  16449715 ttatattgtattttgatgtaactattgaaaataaaaatattaattgatgatcacat---aagaaaggaacaaaaa--agaagtatttcactgactcaccc 16449621  T
Q  399 gaataggaaactcatgtaatcaattcgtcatctataattatggagggaatgtgggcaatcttacgtcactctttcccttgcttcctctgcaaccttgctt 498  Q
     ||||  ||||||| || || | ||| ||||| |||| |||||||||||| || ||||||||||| |||||||||||| |||||||  |||  |||||||    
T  16449620 aaataaaaaactcaggtgataagttcatcatcgataactatggagggaatatgagcaatcttacgccactctttccctcgcttcctgcgcacacttgctt 16449521  T
Q  499 ccagtaatggacagtgagtcatatttagcactaaaagagaggaaggaaatcctttctttggcaacaacctgagtttcggagcattaacaatctcaaggtt 598  Q
    | |||||||||||  |||||||| |||||||| |||||||||||||||||||||| || || |||| | ||||||| |||||||||| ||||||||| ||    
T  16449520 ctagtaatggacaccgagtcatacttagcactgaaagagaggaaggaaatccttttttaggaaacatcttgagtttgggagcattaataatctcaagttt 16449421  T
Q  599 ttggagagaagtgagatgttgaagccacttccgatcaatgattttaccactaaaaccacagatgcata 666  Q
    |||||||||   |||||||||||||||||||| |||||||  | || || ||| ||||||||||||||    
T  16449420 ttggagagagacgagatgttgaagccacttcccatcaatgcgtgtatcagtaagaccacagatgcata 16449353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 8e-63; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 384 - 666
Target Start/End: Complemental strand, 5991373 - 5991091
Alignment:
Q  384 ttcagagactcacccgaataggaaactcatgtaatcaattcgtcatctataattatggagggaatgtgggcaatcttacgtcactctttcccttgcttcc 483  Q
    ||||||||||||||   | |||||||| |||| |||||||| ||||| |||| |||||  ||||| || ||||||||||| |||||||||||| ||||||    
T  5991373 ttcagagactcacctagacaggaaacttatgtgatcaattcatcatcgataactatggcaggaatatgagcaatcttacgccactctttccctcgcttcc 5991274  T
Q  484 tctgcaaccttgcttccagtaatggacagtgagtcatatttagcactaaaagagaggaaggaaatcctttctttggcaacaacctgagtttcggagcatt 583  Q
    |||||||| ||||| |||||||||||||  |||| ||| |||| ||| ||||||||||||| |||||||  ||||||||  || ||||||| ||||| ||    
T  5991273 tctgcaactttgctaccagtaatggacaacgagtaatacttagtactgaaagagaggaaggcaatccttcttttggcaatgacttgagtttgggagcgtt 5991174  T
Q  584 aacaatctcaaggttttggagagaagtgagatgttgaagccacttccgatcaatgattttaccactaaaaccacagatgcata 666  Q
    |||||||||||||||||||||| | ||||||||||||| |||||||| ||||||| ||||| || ||| ||||| ||||||||    
T  5991173 aacaatctcaaggttttggagaaaggtgagatgttgaaaccacttcccatcaatgcttttatcattaagaccacggatgcata 5991091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 29 - 59
Target Start/End: Complemental strand, 5992514 - 5992484
Alignment:
Q  29 taaactgagggagggagaaaaacacaatact 59  Q
    |||||||||||||||||||||||||||||||    
T  5992514 taaactgagggagggagaaaaacacaatact 5992484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 4e-46; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 348 - 636
Target Start/End: Complemental strand, 18390934 - 18390649
Alignment:
Q  348 atgacataataagaaagaaacaaaaaatagaagcctttcagagactcacccgaataggaaactcatgtaatcaattcgtcatctataattatggagggaa 447  Q
    ||||||||||| ||| ||||||||||| | |||  ||||||||||||||   ||   |||| | || | ||||||||||| |  ||||||||| ||||||    
T  18390934 atgacataataggaacgaaacaaaaaaaacaagtatttcagagactcacgacaa---gaaagttatttgatcaattcgtcgttgataattatgaagggaa 18390838  T
Q  448 tgtgggcaatcttacgtcactctttcccttgcttcctctgcaaccttgcttccagtaatggacagtgagtcatatttagcactaaaagagaggaaggaaa 547  Q
    |||| | ||||||| | |||||||||||| ||||| || |||| ||| |||||| |||||||||   ||||| |||||| ||| ||||||||||| | ||    
T  18390837 tgtgagaaatcttatgccactctttccctcgcttcttccgcaaacttccttccaataatggacaacaagtcacatttagtactgaaagagaggaaagcaa 18390738  T
Q  548 tcctttctttggcaacaacctgagtttcggagcattaacaatctcaaggttttggagagaagtgagatgttgaagccacttccgatcaa 636  Q
    | |||| ||||||||| || ||||||| ||||| |||||||||||||||||||| |||||||  ||||||||||||||||||| |||||    
T  18390737 ttctttttttggcaacgacttgagtttgggagcgttaacaatctcaaggttttgaagagaaggaagatgttgaagccacttcccatcaa 18390649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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