View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_low_10 (Length: 709)
Name: NF19675_low_10
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 510; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 97 - 693
Target Start/End: Complemental strand, 10443211 - 10442612
Alignment:
| Q |
97 |
aacaatctattttaacaatctctttactagatttccattttctgtcccatataagtgcaggattaatagtaacaatatccttatctcttaaagcaccatc |
196 |
Q |
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| T |
10443211 |
aacaaactattttaacaatctctttactagatttccattttctgtcccatataagtgcaggattaatagtaacaatatccttgtctcttaaagcaccatc |
10443112 |
T |
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| Q |
197 |
cacatccagcaagatcttcaatccnnnnnnnn---catataaattacaaatggacgaaaactatgtaaggttgagtgttcctgataaatattcttaaaat |
293 |
Q |
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| T |
10443111 |
cacatccagcaagatcttaaatccaaaaaaaaaaacatataaattacaaatggacgaaaactatgtaaggttgagtgttcctgataaatattcttaaaat |
10443012 |
T |
|
| Q |
294 |
tccacctagtattaagaaacacataatatacaacaatttgcatgcaattttggtttcagaaacaggcaaagaagaagccattgttattgatatcatgaac |
393 |
Q |
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| T |
10443011 |
tccacctagtattaagaaacacataatatacaacaatttgcatgcaattctggtttcagaaacaggcaaagaagaagccattgttattgatatcatgaac |
10442912 |
T |
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| Q |
394 |
tccaataccctgccgcaccttaccccatctgcaccacccacaaaaagaacaaatgagtaaatttactaaccttgtgcacggaggttggtagatgctgaaa |
493 |
Q |
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||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
10442911 |
tccaatatcctgccgcaccttaccccacctgcaccacccacaaaaagaacaaatgagtaaatttactaaccttgtgcacggaggttggtagatgctccaa |
10442812 |
T |
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| Q |
494 |
tggtgattgaaatgctggagaaggcattggtatagaggaagttagaggcagtgaatccatatccttccaattagggttcaaattttgtgctaataaccgt |
593 |
Q |
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| T |
10442811 |
tggtgattgaaatgctggagaaggcattggtacagaggaagttagaggcagtgaacccatatccttccaattagggttcaaattttgtgctaataaccat |
10442712 |
T |
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| Q |
594 |
tctctaggatgtgcaaatcgatcagaagttaacaaagattgaggtgttggaaagggacctaaagtagaatccacaattgaagaaccaggattatggacag |
693 |
Q |
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| T |
10442711 |
tctctaggatgtgcaaatcgatcagaagttaacaaagattgaggtgttagaaagggacctaaagtagaatccacaattgaagaaccacgattatggacag |
10442612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 10443368 - 10443293
Alignment:
| Q |
11 |
cacagacaaaactcatgcaattggtatggttgagcatatttgttgttaacctgtgagcagagaacaatgataaagt |
86 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
10443368 |
cacagacaaaactcatgcaattggtatggttgagcatatttgttgttaacctgtgagcagaggacaaggataaagt |
10443293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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